Wall clock time and date at job start Mon Mar 30 2020 03:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47021 * 2 1 4 4 C 1.50699 * 109.47389 * 239.99999 * 2 1 3 5 5 H 1.08001 * 119.99990 * 239.72594 * 4 2 1 6 6 C 1.37873 * 119.99793 * 59.99837 * 4 2 1 7 7 N 1.31509 * 120.00177 * 359.72565 * 6 4 2 8 8 Si 1.86802 * 119.99873 * 179.72557 * 6 4 2 9 9 H 1.48508 * 109.47120 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47331 * 119.99763 * 8 6 4 11 11 H 1.48493 * 109.47357 * 240.00123 * 8 6 4 12 12 N 1.46907 * 109.47238 * 119.99607 * 2 1 3 13 13 C 1.48465 * 111.00113 * 304.26995 * 12 2 1 14 14 C 1.54398 * 103.46909 * 200.46771 * 13 12 2 15 15 C 1.54415 * 103.22003 * 37.09649 * 14 13 12 16 16 H 1.09003 * 112.27203 * 100.68876 * 15 14 13 17 17 C 1.54231 * 109.46097 * 226.07015 * 15 14 13 18 18 N 1.48555 * 104.55335 * 137.05275 * 17 15 14 19 19 C 1.48501 * 104.20928 * 320.01139 * 18 17 15 20 20 C 1.47879 * 111.00103 * 186.60188 * 12 2 1 21 21 H 1.09003 * 111.76096 * 23.05878 * 20 12 2 22 22 H 1.08999 * 109.47213 * 176.46979 * 1 2 3 23 23 H 1.09006 * 109.47399 * 296.46815 * 1 2 3 24 24 H 1.08998 * 109.47183 * 56.47005 * 1 2 3 25 25 H 0.97002 * 119.99886 * 180.02562 * 7 6 4 26 26 H 1.08998 * 110.66426 * 318.48775 * 13 12 2 27 27 H 1.08999 * 110.66731 * 81.61797 * 13 12 2 28 28 H 1.08996 * 109.96991 * 278.93898 * 14 13 12 29 29 H 1.09001 * 111.37818 * 155.91540 * 14 13 12 30 30 H 1.09002 * 110.42486 * 255.82703 * 17 15 14 31 31 H 1.09007 * 110.41948 * 18.28945 * 17 15 14 32 32 H 1.00903 * 111.00116 * 79.55394 * 18 17 15 33 33 H 1.09002 * 110.36456 * 280.50212 * 19 18 17 34 34 H 1.09001 * 110.37117 * 158.17270 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6569 -1.5859 -1.1313 6 6 1.6992 -0.2393 -2.4826 7 7 0.9387 0.8267 -2.6033 8 14 2.3283 -1.1154 -4.0079 9 1 3.1573 -2.2794 -3.6037 10 1 1.1767 -1.5863 -4.8187 11 1 3.1505 -0.1776 -4.8137 12 7 2.0197 -0.6924 1.1995 13 6 1.4612 -0.0813 2.4319 14 6 2.4404 -0.5374 3.5351 15 6 3.8131 -0.4927 2.8293 16 1 4.3796 0.4031 3.0840 17 6 4.5935 -1.7860 3.1409 18 7 5.1944 -2.1817 1.8413 19 6 4.1285 -1.9008 0.8462 20 6 3.4893 -0.5762 1.3157 21 1 3.8707 0.2875 0.7709 22 1 -0.3633 -1.0257 -0.0633 23 1 -0.3634 0.4580 0.9200 24 1 -0.3633 0.5676 -0.8566 25 1 0.7041 1.1579 -3.4844 26 1 1.4602 1.0060 2.3557 27 1 0.4558 -0.4554 2.6253 28 1 2.2010 -1.5536 3.8484 29 1 2.4230 0.1417 4.3875 30 1 5.3735 -1.5916 3.8771 31 1 3.9166 -2.5618 3.4988 32 1 6.0230 -1.6400 1.6461 33 1 3.3881 -2.7007 0.8474 34 1 4.5592 -1.7828 -0.1481 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720527224.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:09 Heat of formation + Delta-G solvation = -10.262473 kcal Electronic energy + Delta-G solvation = -14795.313056 eV Core-core repulsion = 12533.866595 eV Total energy + Delta-G solvation = -2261.446461 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.96593 -37.17984 -35.10996 -32.97292 -30.62145 -28.91985 -27.35165 -27.01677 -23.10266 -22.81821 -21.24300 -20.27983 -18.28525 -17.86158 -16.70037 -16.37313 -15.84746 -15.33028 -14.64516 -14.46802 -14.08791 -13.99550 -13.38195 -13.13046 -12.92198 -12.68565 -12.55944 -12.39108 -12.22555 -11.88762 -11.78566 -11.64646 -11.52769 -11.39311 -10.91000 -10.55318 -9.66201 -9.02342 -8.12165 -6.22754 1.38605 1.41115 1.52792 2.41082 3.16230 3.28862 3.45567 3.58954 3.86350 4.14507 4.35640 4.45687 4.46197 4.60193 4.69304 4.75651 4.84804 4.90452 4.92694 4.99998 5.08723 5.10734 5.21638 5.28688 5.38087 5.46441 5.63472 5.75963 5.78918 6.24351 6.40142 6.51543 6.64487 6.91961 7.46586 8.94540 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.035845 B = 0.011311 C = 0.009022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.943629 B = 2474.799069 C = 3102.863329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.209 3.791 3 H -0.042 1.042 4 C -0.511 4.511 5 H 0.064 0.936 6 C 0.009 3.991 7 N -0.924 5.924 8 Si 0.956 3.044 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.510 5.510 13 C 0.029 3.971 14 C -0.101 4.101 15 C -0.133 4.133 16 H 0.090 0.910 17 C 0.058 3.942 18 N -0.673 5.673 19 C 0.072 3.928 20 C 0.045 3.955 21 H 0.029 0.971 22 H 0.030 0.970 23 H 0.029 0.971 24 H 0.057 0.943 25 H 0.260 0.740 26 H 0.020 0.980 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.340 0.660 33 H 0.070 0.930 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.562 -2.471 10.961 12.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.101 3.899 3 H -0.025 1.025 4 C -0.550 4.550 5 H 0.083 0.917 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.782 3.218 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.235 5.235 13 C -0.099 4.099 14 C -0.139 4.139 15 C -0.153 4.153 16 H 0.108 0.892 17 C -0.072 4.072 18 N -0.299 5.299 19 C -0.059 4.059 20 C -0.066 4.066 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.156 0.844 33 H 0.088 0.912 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.254 -3.681 10.813 12.572 hybrid contribution 0.071 1.961 -1.414 2.419 sum 5.325 -1.719 9.398 10.938 Atomic orbital electron populations 1.21638 0.97360 0.99450 0.99354 1.19216 0.92638 0.89828 0.88169 1.02469 1.21494 1.30539 1.12350 0.90605 0.91746 1.25712 0.95535 0.95765 1.01903 1.70036 1.37991 1.24533 1.23834 0.85529 0.78164 0.78693 0.79434 1.19014 1.20688 1.20819 1.64876 1.04329 1.52221 1.02030 1.23183 0.99675 0.96090 0.90963 1.22403 0.92275 1.02633 0.96615 1.23371 0.98199 1.00420 0.93335 0.89215 1.23096 0.98219 0.93732 0.92154 1.63361 1.06364 1.57413 1.02800 1.22752 0.93234 0.95276 0.94596 1.23576 0.90038 0.97318 0.95696 0.95318 0.95086 0.95170 0.92398 0.93090 0.96120 0.90514 0.90121 0.89075 0.88536 0.90241 0.84445 0.91151 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.76 71.98 0.63 -5.39 16 2 C 0.21 10.87 1.80 44.17 0.08 10.95 16 3 H -0.04 -2.47 7.97 -2.39 -0.02 -2.49 16 4 C -0.51 -28.43 8.17 25.60 0.21 -28.22 16 5 H 0.06 3.54 5.89 -2.91 -0.02 3.53 16 6 C 0.01 0.50 5.31 84.65 0.45 0.95 16 7 N -0.92 -54.10 11.35 21.44 0.24 -53.86 16 8 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 N -0.51 -22.00 4.57 -834.07 -3.81 -25.81 16 13 C 0.03 1.03 5.20 86.48 0.45 1.48 16 14 C -0.10 -2.70 6.59 31.55 0.21 -2.49 16 15 C -0.13 -3.74 4.00 -9.21 -0.04 -3.78 16 16 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 17 C 0.06 1.41 7.02 86.40 0.61 2.02 16 18 N -0.67 -19.49 7.62 -501.26 -3.82 -23.31 16 19 C 0.07 2.65 5.68 86.46 0.49 3.14 16 20 C 0.04 1.72 3.05 45.89 0.14 1.86 16 21 H 0.03 1.27 7.72 -2.39 -0.02 1.25 16 22 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.03 1.32 6.65 -2.38 -0.02 1.31 16 24 H 0.06 3.20 6.16 -2.39 -0.01 3.18 16 25 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.02 0.77 8.02 -2.39 -0.02 0.75 16 27 H 0.08 2.65 7.56 -2.39 -0.02 2.63 16 28 H 0.08 2.04 7.23 -2.39 -0.02 2.02 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.99 7.23 -2.38 -0.02 1.98 16 32 H 0.34 8.63 8.92 -89.69 -0.80 7.83 16 33 H 0.07 2.89 7.96 -2.39 -0.02 2.87 16 34 H 0.05 2.15 7.71 -2.39 -0.02 2.13 16 Total: -1.00 -61.60 259.86 -1.86 -63.45 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.28 Total: 12.55 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 3.23 Total: -19.48 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -7.39 Total: -102.98 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -61.60 -1.86 -63.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720527224.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.192 kcal (2) G-P(sol) polarization free energy of solvation -61.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds