Wall clock time and date at job start Mon Mar 30 2020 02:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00438 * 2 1 4 4 H 1.48504 * 109.47326 * 270.00242 * 3 2 1 5 5 H 1.48506 * 109.47203 * 29.99952 * 3 2 1 6 6 H 1.48497 * 109.47546 * 149.99652 * 3 2 1 7 7 C 1.37876 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00314 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99995 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47270 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47057 * 179.97438 * 10 9 7 12 12 C 1.48856 * 110.99911 * 303.88383 * 11 10 9 13 13 H 1.09000 * 112.44801 * 45.83791 * 12 11 10 14 14 C 1.54699 * 103.99898 * 283.95477 * 12 11 10 15 15 C 1.56072 * 104.88353 * 334.03095 * 14 12 11 16 16 C 1.48857 * 110.99707 * 189.99866 * 11 10 9 17 17 H 1.08999 * 112.44703 * 313.49553 * 16 11 10 18 18 C 1.53777 * 106.93774 * 189.76395 * 16 11 10 19 19 N 1.46961 * 108.95996 * 296.39460 * 18 16 11 20 20 C 1.46952 * 111.66106 * 55.33287 * 19 18 16 21 21 H 0.97005 * 119.99274 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47097 * 59.99900 * 9 7 2 23 23 H 1.08997 * 109.46988 * 299.99858 * 9 7 2 24 24 H 1.09001 * 109.47167 * 59.99912 * 10 9 7 25 25 H 1.08997 * 109.46974 * 299.99836 * 10 9 7 26 26 H 1.08997 * 110.38763 * 92.87263 * 14 12 11 27 27 H 1.08997 * 110.39090 * 215.14049 * 14 12 11 28 28 H 1.09006 * 110.99845 * 241.40701 * 15 14 12 29 29 H 1.08999 * 110.57279 * 118.48354 * 15 14 12 30 30 H 1.09000 * 109.55871 * 56.23394 * 18 16 11 31 31 H 1.09000 * 109.55978 * 176.54820 * 18 16 11 32 32 H 1.00904 * 111.00136 * 179.77303 * 19 18 16 33 33 H 1.08996 * 109.55753 * 184.81522 * 20 19 18 34 34 H 1.09000 * 109.55246 * 64.51212 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 7 1.5105 -4.9343 0.0024 12 6 0.5723 -5.0080 1.1558 13 1 -0.0032 -4.0912 1.2833 14 6 1.4897 -5.3018 2.3663 15 6 2.7350 -6.0214 1.7602 16 6 2.4289 -6.0804 0.2450 17 1 3.3315 -6.0266 -0.3638 18 6 1.6231 -7.3636 -0.0177 19 7 0.5277 -7.4477 0.9584 20 6 -0.3150 -6.2441 0.9332 21 1 -0.4849 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8711 -3.6040 0.8923 25 1 2.8724 -3.6048 -0.8877 26 1 1.7881 -4.3722 2.8510 27 1 0.9830 -5.9543 3.0773 28 1 2.8405 -7.0276 2.1658 29 1 3.6393 -5.4408 1.9426 30 1 1.2114 -7.3358 -1.0265 31 1 2.2740 -8.2314 0.0886 32 1 -0.0248 -8.2792 0.8112 33 1 -1.0615 -6.3047 1.7251 34 1 -0.8121 -6.1670 -0.0337 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723874887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:10 Heat of formation + Delta-G solvation = -13.493464 kcal Electronic energy + Delta-G solvation = -14558.214000 eV Core-core repulsion = 12296.627432 eV Total energy + Delta-G solvation = -2261.586568 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.45505 -36.26696 -34.83727 -32.70821 -32.15768 -30.18357 -26.99682 -25.45972 -24.92080 -22.42977 -21.10425 -19.63964 -18.71943 -17.85014 -16.56990 -16.48901 -15.52936 -15.33397 -15.00411 -14.73503 -14.52321 -14.19860 -13.72236 -13.43710 -13.18904 -12.90222 -12.58836 -12.34257 -12.18237 -11.86138 -11.74271 -11.56712 -11.27659 -11.20908 -11.08452 -10.56135 -9.45405 -9.25773 -8.22325 -6.33803 1.38234 1.39986 1.50992 2.38553 3.07392 3.10753 3.35166 3.84408 3.86644 4.08433 4.16778 4.34445 4.44168 4.51789 4.56270 4.71095 4.74008 4.82044 4.91609 4.98704 5.04380 5.06043 5.13041 5.23156 5.40888 5.43583 5.64391 5.76322 5.93835 6.07867 6.18457 6.29669 6.61755 6.82412 7.35201 8.89712 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.058212 B = 0.007560 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.885305 B = 3702.940614 C = 3846.297154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.037 3.963 10 C 0.070 3.930 11 N -0.521 5.521 12 C 0.046 3.954 13 H 0.074 0.926 14 C -0.126 4.126 15 C -0.121 4.121 16 C 0.047 3.953 17 H 0.097 0.903 18 C 0.077 3.923 19 N -0.682 5.682 20 C 0.079 3.921 21 H 0.264 0.736 22 H -0.013 1.013 23 H -0.002 1.002 24 H 0.024 0.976 25 H 0.057 0.943 26 H 0.034 0.966 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.102 0.898 32 H 0.354 0.646 33 H 0.090 0.910 34 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.992 -14.601 2.759 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.058 4.058 11 N -0.244 5.244 12 C -0.063 4.063 13 H 0.092 0.908 14 C -0.165 4.165 15 C -0.160 4.160 16 C -0.062 4.062 17 H 0.115 0.885 18 C -0.053 4.053 19 N -0.315 5.315 20 C -0.051 4.051 21 H 0.073 0.927 22 H 0.005 0.995 23 H 0.016 0.984 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.120 0.880 32 H 0.174 0.826 33 H 0.108 0.892 34 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.951 -14.300 2.719 14.853 hybrid contribution 0.036 1.299 -0.191 1.313 sum 2.987 -13.002 2.528 13.578 Atomic orbital electron populations 1.70109 1.07797 1.27798 1.51351 1.25966 0.95781 1.03323 0.94543 0.85425 0.78627 0.78296 0.78560 1.19685 1.20543 1.18792 1.21613 0.93452 0.92327 1.51028 0.92367 1.18948 0.94150 0.92143 0.94798 1.22004 0.95940 0.89089 0.98774 1.65718 1.15327 1.02810 1.40547 1.23273 0.95506 0.97792 0.89690 0.90825 1.22906 0.96634 0.98872 0.98119 1.22914 0.96326 1.01277 0.95530 1.23378 0.95472 0.91480 0.95871 0.88502 1.22039 0.93500 0.96651 0.93108 1.60256 1.14011 1.04475 1.52747 1.21931 0.94081 0.89060 0.99999 0.92719 0.99460 0.98396 0.95816 0.92406 0.94693 0.89626 0.88910 0.93326 0.95312 0.87987 0.82628 0.89201 0.95664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 2 C 0.00 0.11 5.46 84.65 0.46 0.58 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.04 2.04 4.72 29.85 0.14 2.18 16 10 C 0.07 3.13 4.87 86.30 0.42 3.55 16 11 N -0.52 -19.85 5.16 -826.32 -4.27 -24.12 16 12 C 0.05 1.67 3.46 45.38 0.16 1.83 16 13 H 0.07 3.18 5.83 -2.39 -0.01 3.17 16 14 C -0.13 -4.04 5.51 32.24 0.18 -3.86 16 15 C -0.12 -3.41 5.54 32.24 0.18 -3.23 16 16 C 0.05 1.38 3.70 45.38 0.17 1.54 16 17 H 0.10 2.69 8.13 -2.39 -0.02 2.67 16 18 C 0.08 1.80 6.16 86.55 0.53 2.33 16 19 N -0.68 -15.57 5.82 -510.80 -2.97 -18.54 16 20 C 0.08 2.24 6.17 86.56 0.53 2.77 16 21 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 22 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 23 H 0.00 -0.13 6.08 -2.39 -0.01 -0.14 16 24 H 0.02 1.05 6.72 -2.39 -0.02 1.04 16 25 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.03 1.25 8.11 -2.39 -0.02 1.23 16 27 H 0.09 2.43 7.81 -2.39 -0.02 2.42 16 28 H 0.09 2.22 7.82 -2.38 -0.02 2.20 16 29 H 0.05 1.41 7.89 -2.39 -0.02 1.39 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.35 6.19 8.90 -89.69 -0.80 5.39 16 33 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -65.67 262.01 -1.65 -67.32 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.27 Total: 9.85 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 3.00 Total: -24.16 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -6.96 Total: -100.09 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.67 -1.65 -67.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723874887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.826 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds