Wall clock time and date at job start Mon Mar 30 2020 03:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46654 * 2 1 4 4 C 1.50700 * 109.47308 * 119.99594 * 2 1 3 5 5 H 1.07996 * 120.00111 * 120.00220 * 4 2 1 6 6 C 1.37883 * 119.99789 * 299.99957 * 4 2 1 7 7 N 1.31513 * 120.00131 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99952 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46994 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47029 * 119.99980 * 8 6 4 11 11 H 1.48494 * 109.47363 * 240.00604 * 8 6 4 12 12 N 1.46889 * 109.47181 * 239.99841 * 2 1 3 13 13 C 1.48861 * 111.00370 * 176.78355 * 12 2 1 14 14 H 1.09011 * 112.44317 * 45.83537 * 13 12 2 15 15 C 1.54692 * 103.99757 * 283.95718 * 13 12 2 16 16 C 1.54322 * 104.72044 * 334.05249 * 15 13 12 17 17 C 1.48863 * 111.00450 * 62.89803 * 12 2 1 18 18 H 1.09003 * 112.43978 * 314.16958 * 17 12 2 19 19 C 1.53771 * 106.94342 * 189.76193 * 17 12 2 20 20 N 1.46963 * 108.96304 * 296.39469 * 19 17 12 21 21 C 1.48419 * 111.52407 * 55.68178 * 20 19 17 22 22 H 1.08997 * 109.47371 * 54.14044 * 1 2 3 23 23 H 1.08999 * 109.47055 * 174.14406 * 1 2 3 24 24 H 1.09004 * 109.47001 * 294.13759 * 1 2 3 25 25 H 0.96996 * 120.00006 * 179.97438 * 7 6 4 26 26 H 1.09003 * 110.38935 * 92.86457 * 15 13 12 27 27 H 1.09000 * 110.39178 * 215.12925 * 15 13 12 28 28 H 1.09007 * 110.38828 * 118.81837 * 16 15 13 29 29 H 1.09004 * 110.39416 * 241.07606 * 16 15 13 30 30 H 1.09007 * 109.55902 * 56.23328 * 19 17 12 31 31 H 1.08995 * 109.56246 * 176.44492 * 19 17 12 32 32 H 1.00902 * 110.99701 * 290.90148 * 20 19 17 33 33 H 1.08999 * 109.44335 * 184.81984 * 21 20 19 34 34 H 1.09006 * 110.43073 * 64.03650 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2391 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3214 -1.1200 4.0081 9 1 3.1465 -2.2867 3.6040 10 1 3.1467 -0.1869 4.8165 11 1 1.1662 -1.5863 4.8162 12 7 2.0197 -0.6925 -1.1993 13 6 3.5057 -0.6452 -1.2734 14 1 3.9777 -0.8871 -0.3211 15 6 3.8116 0.7998 -1.7331 16 6 2.5496 1.2416 -2.5036 17 6 1.6006 0.0218 -2.4363 18 1 0.5505 0.3130 -2.4132 19 6 1.9395 -0.8977 -3.6213 20 7 3.3959 -1.0851 -3.6792 21 6 3.9292 -1.6069 -2.3961 22 1 -0.3634 0.6020 -0.8328 23 1 -0.3633 -1.0223 -0.1048 24 1 -0.3633 0.4203 0.9379 25 1 0.7082 1.1611 3.4843 26 1 3.9757 1.4460 -0.8708 27 1 4.6828 0.8135 -2.3881 28 1 2.0927 2.1054 -2.0205 29 1 2.7988 1.4745 -3.5390 30 1 1.4526 -1.8634 -3.4848 31 1 1.5917 -0.4417 -4.5482 32 1 3.8600 -0.2308 -3.9494 33 1 5.0171 -1.6520 -2.4469 34 1 3.5303 -2.6012 -2.1946 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723875291.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:52 Heat of formation + Delta-G solvation = 14.674318 kcal Electronic energy + Delta-G solvation = -15066.489283 eV Core-core repulsion = 12806.124162 eV Total energy + Delta-G solvation = -2260.365121 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.17294 -34.65401 -32.48910 -30.87996 -30.48126 -27.92419 -25.30864 -24.05320 -23.70136 -20.41141 -19.63087 -18.44970 -16.21129 -16.19576 -15.52213 -14.41448 -13.82390 -13.54424 -13.31738 -13.18213 -12.56048 -12.05407 -11.97422 -11.62596 -11.34826 -10.95110 -10.93239 -10.53906 -10.44989 -10.34521 -10.08855 -10.04253 -9.88882 -9.84723 -8.90521 -8.44499 -8.04678 -7.29235 -6.02146 -4.06711 3.28018 3.36156 3.40570 4.39107 4.66701 4.75806 5.26767 5.30666 5.32760 5.56319 5.59271 5.77467 5.90199 5.94580 6.08816 6.14140 6.22243 6.39269 6.41467 6.48480 6.63391 6.70488 6.85557 7.05013 7.07389 7.36885 7.49943 7.60832 7.75756 7.81081 8.15293 8.31973 8.55346 9.00320 9.58231 11.04294 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.044408 B = 0.010651 C = 0.009799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.365885 B = 2628.257976 C = 2856.748756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.201 3.799 3 H 0.003 0.997 4 C -0.499 4.499 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.490 5.490 13 C 0.035 3.965 14 H 0.102 0.898 15 C -0.148 4.148 16 C -0.149 4.149 17 C 0.018 3.982 18 H 0.091 0.909 19 C 0.072 3.928 20 N -0.691 5.691 21 C 0.069 3.931 22 H 0.005 0.995 23 H 0.032 0.968 24 H 0.087 0.913 25 H 0.259 0.741 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.333 0.667 33 H 0.065 0.935 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 -0.451 -9.027 9.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.095 3.905 3 H 0.021 0.979 4 C -0.538 4.538 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.213 5.213 13 C -0.076 4.076 14 H 0.120 0.880 15 C -0.188 4.188 16 C -0.189 4.189 17 C -0.093 4.093 18 H 0.109 0.891 19 C -0.058 4.058 20 N -0.320 5.320 21 C -0.061 4.061 22 H 0.024 0.976 23 H 0.051 0.949 24 H 0.105 0.895 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.151 0.849 33 H 0.083 0.917 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.202 -1.547 -9.128 9.796 hybrid contribution 0.450 1.470 1.580 2.204 sum 3.651 -0.076 -7.548 8.385 Atomic orbital electron populations 1.21823 0.97923 0.98645 1.00729 1.19341 0.92206 0.92584 0.86408 0.97919 1.21148 1.30733 1.12124 0.89788 0.92087 1.24931 0.95280 0.95092 0.99002 1.69897 1.37021 1.23133 1.23242 0.86489 0.78618 0.79640 0.82976 1.19723 1.21201 1.21034 1.65723 1.05248 1.48513 1.01856 1.23703 0.91497 0.92930 0.99476 0.88004 1.22892 0.96946 0.99157 0.99772 1.22915 0.96889 0.99838 0.99240 1.23879 0.99223 0.92283 0.93889 0.89093 1.22108 0.88458 0.99556 0.95664 1.60886 1.04753 1.34913 1.31463 1.22442 0.98069 0.98713 0.86843 0.97585 0.94914 0.89461 0.93088 0.91544 0.92444 0.91983 0.92376 0.90485 0.91759 0.84929 0.91653 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.81 37.16 0.33 -2.96 16 2 C 0.20 5.04 1.77 -68.87 -0.12 4.92 16 3 H 0.00 0.09 6.67 -51.93 -0.35 -0.26 16 4 C -0.50 -13.64 7.80 -34.44 -0.27 -13.91 16 5 H 0.06 1.68 7.11 -52.49 -0.37 1.31 16 6 C 0.06 1.59 5.29 -17.82 -0.09 1.50 16 7 N -0.89 -25.51 11.29 55.43 0.63 -24.88 16 8 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.49 -10.44 4.86 -206.06 -1.00 -11.44 16 13 C 0.03 0.66 3.45 -65.33 -0.23 0.44 16 14 H 0.10 2.15 6.71 -51.92 -0.35 1.80 16 15 C -0.15 -2.57 5.30 -25.15 -0.13 -2.70 16 16 C -0.15 -2.51 5.29 -25.15 -0.13 -2.64 16 17 C 0.02 0.33 3.54 -65.33 -0.23 0.10 16 18 H 0.09 1.70 6.22 -51.93 -0.32 1.37 16 19 C 0.07 1.12 6.24 -3.39 -0.02 1.10 16 20 N -0.69 -10.37 6.79 -111.68 -0.76 -11.12 16 21 C 0.07 1.11 6.37 -2.58 -0.02 1.09 16 22 H 0.01 0.12 6.54 -51.93 -0.34 -0.22 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.09 2.37 5.93 -51.93 -0.31 2.06 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.07 1.27 7.98 -51.93 -0.41 0.86 16 27 H 0.06 0.85 7.22 -51.93 -0.37 0.47 16 28 H 0.06 1.12 7.99 -51.92 -0.41 0.71 16 29 H 0.06 0.83 7.20 -51.93 -0.37 0.45 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.33 4.61 6.31 -39.29 -0.25 4.36 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 252.57 15.07 3.81 3.81 Total: -1.00 -28.03 252.57 -8.38 -36.41 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.11 Total: 3.95 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -0.92 Total: -13.07 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -1.13 Total: -47.45 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.03 -8.38 -36.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723875291.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.085 kcal (2) G-P(sol) polarization free energy of solvation -28.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds