Wall clock time and date at job start Mon Mar 30 2020 03:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46654 * 2 1 4 4 C 1.50700 * 109.47308 * 119.99594 * 2 1 3 5 5 H 1.07996 * 120.00111 * 120.00220 * 4 2 1 6 6 C 1.37883 * 119.99789 * 299.99957 * 4 2 1 7 7 N 1.31513 * 120.00131 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99952 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46994 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47029 * 119.99980 * 8 6 4 11 11 H 1.48494 * 109.47363 * 240.00604 * 8 6 4 12 12 N 1.46889 * 109.47181 * 239.99841 * 2 1 3 13 13 C 1.48861 * 111.00370 * 176.78355 * 12 2 1 14 14 H 1.09011 * 112.44317 * 45.83537 * 13 12 2 15 15 C 1.54692 * 103.99757 * 283.95718 * 13 12 2 16 16 C 1.54322 * 104.72044 * 334.05249 * 15 13 12 17 17 C 1.48863 * 111.00450 * 62.89803 * 12 2 1 18 18 H 1.09003 * 112.43978 * 314.16958 * 17 12 2 19 19 C 1.53771 * 106.94342 * 189.76193 * 17 12 2 20 20 N 1.46963 * 108.96304 * 296.39469 * 19 17 12 21 21 C 1.48419 * 111.52407 * 55.68178 * 20 19 17 22 22 H 1.08997 * 109.47371 * 54.14044 * 1 2 3 23 23 H 1.08999 * 109.47055 * 174.14406 * 1 2 3 24 24 H 1.09004 * 109.47001 * 294.13759 * 1 2 3 25 25 H 0.96996 * 120.00006 * 179.97438 * 7 6 4 26 26 H 1.09003 * 110.38935 * 92.86457 * 15 13 12 27 27 H 1.09000 * 110.39178 * 215.12925 * 15 13 12 28 28 H 1.09007 * 110.38828 * 118.81837 * 16 15 13 29 29 H 1.09004 * 110.39416 * 241.07606 * 16 15 13 30 30 H 1.09007 * 109.55902 * 56.23328 * 19 17 12 31 31 H 1.08995 * 109.56246 * 176.44492 * 19 17 12 32 32 H 1.00902 * 110.99701 * 290.90148 * 20 19 17 33 33 H 1.08999 * 109.44335 * 184.81984 * 21 20 19 34 34 H 1.09006 * 110.43073 * 64.03650 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2391 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3214 -1.1200 4.0081 9 1 3.1465 -2.2867 3.6040 10 1 3.1467 -0.1869 4.8165 11 1 1.1662 -1.5863 4.8162 12 7 2.0197 -0.6925 -1.1993 13 6 3.5057 -0.6452 -1.2734 14 1 3.9777 -0.8871 -0.3211 15 6 3.8116 0.7998 -1.7331 16 6 2.5496 1.2416 -2.5036 17 6 1.6006 0.0218 -2.4363 18 1 0.5505 0.3130 -2.4132 19 6 1.9395 -0.8977 -3.6213 20 7 3.3959 -1.0851 -3.6792 21 6 3.9292 -1.6069 -2.3961 22 1 -0.3634 0.6020 -0.8328 23 1 -0.3633 -1.0223 -0.1048 24 1 -0.3633 0.4203 0.9379 25 1 0.7082 1.1611 3.4843 26 1 3.9757 1.4460 -0.8708 27 1 4.6828 0.8135 -2.3881 28 1 2.0927 2.1054 -2.0205 29 1 2.7988 1.4745 -3.5390 30 1 1.4526 -1.8634 -3.4848 31 1 1.5917 -0.4417 -4.5482 32 1 3.8600 -0.2308 -3.9494 33 1 5.0171 -1.6520 -2.4469 34 1 3.5303 -2.6012 -2.1946 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723875291.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:52 Heat of formation + Delta-G solvation = -5.700590 kcal Electronic energy + Delta-G solvation = -15067.372805 eV Core-core repulsion = 12806.124162 eV Total energy + Delta-G solvation = -2261.248643 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.64569 -36.43794 -34.22974 -32.38256 -32.07528 -29.64933 -27.35293 -25.55992 -25.07873 -22.19049 -21.12109 -19.95261 -18.25148 -17.73826 -17.05785 -16.28732 -15.28679 -15.07175 -14.81424 -14.73074 -14.36976 -13.69131 -13.43102 -13.17499 -13.05263 -12.84184 -12.67572 -12.30491 -12.26488 -11.94116 -11.79085 -11.65227 -11.54847 -11.30661 -10.87598 -10.53838 -9.48513 -8.90228 -8.13889 -6.25482 1.37050 1.39252 1.50835 2.39188 3.12966 3.26044 3.41413 3.86198 3.97115 4.12162 4.18568 4.41985 4.63976 4.64726 4.67175 4.77125 4.80861 4.84547 4.97822 4.99630 5.01059 5.09467 5.16943 5.31274 5.36444 5.49380 5.69447 5.72892 6.06490 6.24351 6.34590 6.60377 6.68380 6.89990 7.43614 8.91790 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.044408 B = 0.010651 C = 0.009799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.365885 B = 2628.257976 C = 2856.748756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.210 3.790 3 H -0.031 1.031 4 C -0.514 4.514 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.505 5.505 13 C 0.028 3.972 14 H 0.072 0.928 15 C -0.143 4.143 16 C -0.143 4.143 17 C 0.013 3.987 18 H 0.082 0.918 19 C 0.081 3.919 20 N -0.680 5.680 21 C 0.080 3.920 22 H 0.024 0.976 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.261 0.739 26 H 0.036 0.964 27 H 0.092 0.908 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.345 0.655 33 H 0.092 0.908 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 -0.949 -10.639 11.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.102 3.898 3 H -0.013 1.013 4 C -0.552 4.552 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.783 3.217 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.228 5.228 13 C -0.083 4.083 14 H 0.090 0.910 15 C -0.182 4.182 16 C -0.182 4.182 17 C -0.098 4.098 18 H 0.100 0.900 19 C -0.050 4.050 20 N -0.310 5.310 21 C -0.050 4.050 22 H 0.043 0.957 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.110 0.890 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.164 0.836 33 H 0.110 0.890 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.180 -2.045 -10.762 11.725 hybrid contribution 0.147 1.641 2.048 2.628 sum 4.327 -0.404 -8.715 9.738 Atomic orbital electron populations 1.21648 0.97941 0.98412 1.00050 1.19062 0.92118 0.90787 0.87794 1.01299 1.21402 1.30689 1.11970 0.91163 0.92946 1.25697 0.95471 0.95790 1.01861 1.70019 1.37891 1.24292 1.23883 0.85507 0.78145 0.78636 0.79368 1.19221 1.20689 1.20611 1.65674 1.06942 1.48498 1.01673 1.23766 0.89972 0.95035 0.99528 0.91005 1.22832 0.98661 0.97256 0.99420 1.22869 0.95963 0.98377 1.00994 1.24027 0.99043 0.93333 0.93385 0.90028 1.22089 0.88728 0.98552 0.95585 1.60873 1.04437 1.35546 1.30154 1.22353 0.99589 0.97103 0.85974 0.95677 0.95249 0.92134 0.93018 0.94502 0.88969 0.94079 0.88670 0.91540 0.88537 0.83567 0.89004 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.19 8.81 71.98 0.63 -5.55 16 2 C 0.21 10.81 1.77 44.17 0.08 10.89 16 3 H -0.03 -1.75 6.67 -2.38 -0.02 -1.76 16 4 C -0.51 -28.81 7.80 25.60 0.20 -28.61 16 5 H 0.05 2.96 7.11 -2.91 -0.02 2.94 16 6 C 0.01 0.56 5.29 84.66 0.45 1.01 16 7 N -0.92 -53.85 11.29 21.45 0.24 -53.61 16 8 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 N -0.50 -21.51 4.86 -805.85 -3.91 -25.43 16 13 C 0.03 1.04 3.45 45.37 0.16 1.20 16 14 H 0.07 3.11 6.71 -2.38 -0.02 3.09 16 15 C -0.14 -4.76 5.30 31.62 0.17 -4.59 16 16 C -0.14 -4.53 5.29 31.62 0.17 -4.36 16 17 C 0.01 0.44 3.54 45.37 0.16 0.60 16 18 H 0.08 2.96 6.22 -2.39 -0.01 2.95 16 19 C 0.08 2.25 6.24 86.55 0.54 2.79 16 20 N -0.68 -17.82 6.79 -507.25 -3.44 -21.27 16 21 C 0.08 2.37 6.37 86.27 0.55 2.92 16 22 H 0.02 1.12 6.54 -2.39 -0.02 1.10 16 23 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.06 3.38 5.93 -2.38 -0.01 3.37 16 25 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.04 1.43 7.98 -2.39 -0.02 1.41 16 27 H 0.09 2.41 7.22 -2.39 -0.02 2.40 16 28 H 0.04 1.46 7.99 -2.38 -0.02 1.45 16 29 H 0.09 2.32 7.20 -2.39 -0.02 2.30 16 30 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.35 7.86 6.31 -89.69 -0.57 7.29 16 33 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.07 2.20 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -61.36 252.57 -1.47 -62.83 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.52 Total: 14.71 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 3.10 Total: -23.69 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -7.12 Total: -100.30 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -61.36 -1.47 -62.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723875291.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.127 kcal (2) G-P(sol) polarization free energy of solvation -61.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds