Wall clock time and date at job start Mon Mar 30 2020 03:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47391 * 2 1 4 4 C 1.50694 * 109.47188 * 240.00063 * 2 1 3 5 5 H 1.08005 * 120.00116 * 275.00130 * 4 2 1 6 6 C 1.37881 * 120.00403 * 94.99919 * 4 2 1 7 7 N 1.31515 * 120.00172 * 184.88831 * 6 4 2 8 8 Si 1.86794 * 119.99555 * 4.88267 * 6 4 2 9 9 H 1.48504 * 109.47167 * 84.78338 * 8 6 4 10 10 H 1.48504 * 109.47183 * 204.77888 * 8 6 4 11 11 H 1.48501 * 109.47649 * 324.78259 * 8 6 4 12 12 N 1.46904 * 109.47038 * 119.99841 * 2 1 3 13 13 C 1.48170 * 111.00096 * 299.99917 * 12 2 1 14 14 C 1.52853 * 85.83413 * 223.12116 * 13 12 2 15 15 C 1.48168 * 110.99847 * 200.40903 * 12 2 1 16 16 C 1.53267 * 115.77376 * 140.62159 * 14 13 12 17 17 C 1.54649 * 104.62959 * 129.58015 * 16 14 13 18 18 N 1.48650 * 104.65156 * 23.70816 * 17 16 14 19 19 C 1.48820 * 104.40332 * 321.13013 * 18 17 16 20 20 H 1.08999 * 109.47131 * 55.22850 * 1 2 3 21 21 H 1.09004 * 109.47040 * 175.22979 * 1 2 3 22 22 H 1.08997 * 109.47210 * 295.22980 * 1 2 3 23 23 H 0.96995 * 119.99637 * 179.97438 * 7 6 4 24 24 H 1.09000 * 113.81067 * 108.89249 * 13 12 2 25 25 H 1.08998 * 113.92195 * 337.36252 * 13 12 2 26 26 H 1.09004 * 113.81521 * 22.64869 * 15 12 2 27 27 H 1.08997 * 113.81849 * 251.10810 * 15 12 2 28 28 H 1.08997 * 110.40873 * 248.37245 * 16 14 13 29 29 H 1.09000 * 110.40818 * 10.79903 * 16 14 13 30 30 H 1.09006 * 110.40270 * 142.49665 * 17 16 14 31 31 H 1.08999 * 110.40507 * 264.91039 * 17 16 14 32 32 H 1.00891 * 111.00355 * 80.79501 * 18 17 16 33 33 H 1.09001 * 110.45926 * 279.79814 * 19 18 17 34 34 H 1.08997 * 110.46168 * 157.21298 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3581 7 7 2.7065 -0.6132 -3.4621 8 14 2.3126 1.8790 -2.3177 9 1 3.5973 2.3955 -1.7810 10 1 2.1063 2.3988 -3.6934 11 1 1.1965 2.3271 -1.4467 12 7 2.0197 -0.6925 1.1995 13 6 1.5446 -0.0206 2.4317 14 6 2.9653 -0.2249 2.9573 15 6 3.4189 -0.3090 1.5000 16 6 3.5485 0.9362 3.7703 17 6 4.0815 0.2780 5.0642 18 7 4.3255 -1.1403 4.6917 19 6 3.1885 -1.4888 3.7970 20 1 -0.3633 0.5861 -0.8441 21 1 -0.3633 -1.0241 -0.0855 22 1 -0.3633 0.4380 0.9296 23 1 2.9368 -0.1049 -4.2554 24 1 0.7881 -0.5850 2.9770 25 1 1.2745 1.0257 2.2885 26 1 3.7134 0.6505 1.0745 27 1 4.1431 -1.1010 1.3094 28 1 4.3620 1.4124 3.2232 29 1 2.7713 1.6631 4.0062 30 1 5.0109 0.7537 5.3776 31 1 3.3360 0.3397 5.8570 32 1 5.2073 -1.2416 4.2119 33 1 2.2989 -1.7188 4.3834 34 1 3.4519 -2.3304 3.1563 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724087603.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:56 Heat of formation + Delta-G solvation = 36.330764 kcal Electronic energy + Delta-G solvation = -14504.946596 eV Core-core repulsion = 12245.520569 eV Total energy + Delta-G solvation = -2259.426027 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.32400 -36.65895 -33.23399 -31.16149 -29.27197 -27.40176 -26.20008 -24.61697 -23.00368 -21.74608 -19.31738 -18.27327 -16.99649 -16.40671 -15.38782 -14.67409 -14.18981 -13.84679 -13.69054 -13.52635 -12.54803 -12.46708 -12.35323 -11.94966 -11.58417 -11.44112 -11.15156 -10.97690 -10.81945 -10.70584 -10.09264 -9.99416 -9.97122 -9.61735 -9.19527 -8.65441 -8.55493 -7.79144 -6.10680 -4.08962 3.20431 3.30261 3.30550 4.30640 4.35771 4.53255 4.62895 5.05523 5.15332 5.21388 5.30881 5.45904 5.66579 5.75792 5.90958 5.93328 6.03600 6.09863 6.15514 6.25610 6.26722 6.32378 6.43911 6.52829 6.66110 6.74120 6.80108 7.00146 7.36942 7.47396 7.76492 7.91602 8.61644 9.01251 9.52698 11.02801 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.044601 B = 0.008883 C = 0.008750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.631127 B = 3151.161227 C = 3199.052754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.148 3.852 3 H 0.006 0.994 4 C -0.497 4.497 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.871 3.129 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.267 1.267 12 N -0.461 5.461 13 C 0.012 3.988 14 C -0.128 4.128 15 C 0.035 3.965 16 C -0.147 4.147 17 C 0.041 3.959 18 N -0.674 5.674 19 C 0.072 3.928 20 H 0.045 0.955 21 H 0.054 0.946 22 H 0.022 0.978 23 H 0.264 0.736 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.336 0.664 33 H 0.079 0.921 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 3.774 13.845 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.040 3.960 3 H 0.024 0.976 4 C -0.536 4.536 5 H 0.098 0.902 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.698 3.302 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.192 1.192 12 N -0.184 5.184 13 C -0.118 4.118 14 C -0.130 4.130 15 C -0.094 4.094 16 C -0.187 4.187 17 C -0.089 4.089 18 N -0.299 5.299 19 C -0.057 4.057 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.151 0.849 33 H 0.097 0.903 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.947 2.769 14.136 14.436 hybrid contribution 0.322 2.591 -1.129 2.845 sum 1.269 5.361 13.007 14.126 Atomic orbital electron populations 1.21949 0.97942 1.01118 0.98254 1.20255 0.92579 0.92476 0.90684 0.97598 1.20866 1.42857 0.95909 0.93927 0.90192 1.25014 0.94803 0.97843 0.95457 1.69890 1.46483 1.35576 1.01641 0.86969 0.78830 0.87065 0.77295 1.20375 1.21294 1.19240 1.68693 1.02477 1.46345 1.00860 1.23737 0.95195 0.98128 0.94722 1.23123 0.97738 0.96295 0.95877 1.23590 0.94360 1.00059 0.91434 1.22833 1.00804 0.98140 0.96894 1.23023 1.00579 0.88351 0.96935 1.63386 1.05416 1.19793 1.41348 1.22612 0.94444 0.95886 0.92795 0.93572 0.92688 0.95866 0.92629 0.90360 0.92420 0.92203 0.90177 0.91491 0.91174 0.91345 0.90619 0.84937 0.90269 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.16 37.16 0.34 -2.59 16 2 C 0.15 3.51 1.37 -68.87 -0.09 3.42 16 3 H 0.01 0.15 4.78 -51.93 -0.25 -0.09 16 4 C -0.50 -14.04 8.95 -34.44 -0.31 -14.35 16 5 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 6 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 7 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 8 Si 0.87 21.50 26.99 -169.99 -4.59 16.91 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.36 6.82 56.52 0.39 -5.97 16 12 N -0.46 -9.60 5.97 -237.08 -1.42 -11.01 16 13 C 0.01 0.20 5.85 -3.20 -0.02 0.18 16 14 C -0.13 -1.93 1.20 -154.45 -0.19 -2.11 16 15 C 0.03 0.65 6.88 -3.20 -0.02 0.63 16 16 C -0.15 -1.87 6.52 -25.73 -0.17 -2.04 16 17 C 0.04 0.46 7.49 -1.99 -0.01 0.45 16 18 N -0.67 -8.39 7.63 -109.80 -0.84 -9.22 16 19 C 0.07 1.00 6.87 -2.56 -0.02 0.98 16 20 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 21 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 22 H 0.02 0.43 6.86 -51.93 -0.36 0.08 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.08 1.23 8.05 -51.93 -0.42 0.82 16 25 H 0.06 0.98 7.64 -51.93 -0.40 0.58 16 26 H 0.06 1.18 7.61 -51.93 -0.39 0.79 16 27 H 0.08 1.51 8.02 -51.93 -0.42 1.09 16 28 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 29 H 0.07 0.85 7.94 -51.93 -0.41 0.44 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.34 3.89 8.92 -39.30 -0.35 3.54 16 33 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 34 H 0.08 1.20 7.89 -51.93 -0.41 0.79 16 LS Contribution 268.00 15.07 4.04 4.04 Total: -1.00 -29.80 268.00 -8.11 -37.92 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.50 Total: 1.53 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.59 Total: -13.50 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -1.48 Total: -46.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.59 Total: 16.91 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.80 -8.11 -37.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724087603.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.248 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds