Wall clock time and date at job start Mon Mar 30 2020 03:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47391 * 2 1 4 4 C 1.50694 * 109.47188 * 240.00063 * 2 1 3 5 5 H 1.08005 * 120.00116 * 275.00130 * 4 2 1 6 6 C 1.37881 * 120.00403 * 94.99919 * 4 2 1 7 7 N 1.31515 * 120.00172 * 184.88831 * 6 4 2 8 8 Si 1.86794 * 119.99555 * 4.88267 * 6 4 2 9 9 H 1.48504 * 109.47167 * 84.78338 * 8 6 4 10 10 H 1.48504 * 109.47183 * 204.77888 * 8 6 4 11 11 H 1.48501 * 109.47649 * 324.78259 * 8 6 4 12 12 N 1.46904 * 109.47038 * 119.99841 * 2 1 3 13 13 C 1.48170 * 111.00096 * 299.99917 * 12 2 1 14 14 C 1.52853 * 85.83413 * 223.12116 * 13 12 2 15 15 C 1.48168 * 110.99847 * 200.40903 * 12 2 1 16 16 C 1.53267 * 115.77376 * 140.62159 * 14 13 12 17 17 C 1.54649 * 104.62959 * 129.58015 * 16 14 13 18 18 N 1.48650 * 104.65156 * 23.70816 * 17 16 14 19 19 C 1.48820 * 104.40332 * 321.13013 * 18 17 16 20 20 H 1.08999 * 109.47131 * 55.22850 * 1 2 3 21 21 H 1.09004 * 109.47040 * 175.22979 * 1 2 3 22 22 H 1.08997 * 109.47210 * 295.22980 * 1 2 3 23 23 H 0.96995 * 119.99637 * 179.97438 * 7 6 4 24 24 H 1.09000 * 113.81067 * 108.89249 * 13 12 2 25 25 H 1.08998 * 113.92195 * 337.36252 * 13 12 2 26 26 H 1.09004 * 113.81521 * 22.64869 * 15 12 2 27 27 H 1.08997 * 113.81849 * 251.10810 * 15 12 2 28 28 H 1.08997 * 110.40873 * 248.37245 * 16 14 13 29 29 H 1.09000 * 110.40818 * 10.79903 * 16 14 13 30 30 H 1.09006 * 110.40270 * 142.49665 * 17 16 14 31 31 H 1.08999 * 110.40507 * 264.91039 * 17 16 14 32 32 H 1.00891 * 111.00355 * 80.79501 * 18 17 16 33 33 H 1.09001 * 110.45926 * 279.79814 * 19 18 17 34 34 H 1.08997 * 110.46168 * 157.21298 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3581 7 7 2.7065 -0.6132 -3.4621 8 14 2.3126 1.8790 -2.3177 9 1 3.5973 2.3955 -1.7810 10 1 2.1063 2.3988 -3.6934 11 1 1.1965 2.3271 -1.4467 12 7 2.0197 -0.6925 1.1995 13 6 1.5446 -0.0206 2.4317 14 6 2.9653 -0.2249 2.9573 15 6 3.4189 -0.3090 1.5000 16 6 3.5485 0.9362 3.7703 17 6 4.0815 0.2780 5.0642 18 7 4.3255 -1.1403 4.6917 19 6 3.1885 -1.4888 3.7970 20 1 -0.3633 0.5861 -0.8441 21 1 -0.3633 -1.0241 -0.0855 22 1 -0.3633 0.4380 0.9296 23 1 2.9368 -0.1049 -4.2554 24 1 0.7881 -0.5850 2.9770 25 1 1.2745 1.0257 2.2885 26 1 3.7134 0.6505 1.0745 27 1 4.1431 -1.1010 1.3094 28 1 4.3620 1.4124 3.2232 29 1 2.7713 1.6631 4.0062 30 1 5.0109 0.7537 5.3776 31 1 3.3360 0.3397 5.8570 32 1 5.2073 -1.2416 4.2119 33 1 2.2989 -1.7188 4.3834 34 1 3.4519 -2.3304 3.1563 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724087603.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:56 Heat of formation + Delta-G solvation = 12.393730 kcal Electronic energy + Delta-G solvation = -14505.984583 eV Core-core repulsion = 12245.520569 eV Total energy + Delta-G solvation = -2260.464015 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.67113 -37.94905 -35.16758 -33.05438 -30.31410 -28.72373 -27.93321 -26.38213 -24.44804 -22.79773 -21.04869 -19.60469 -19.04679 -17.52715 -16.90076 -16.35958 -15.53100 -15.40699 -14.99753 -14.84582 -14.58914 -14.01891 -13.77850 -13.22901 -13.14953 -12.90745 -12.64791 -12.60006 -12.19761 -11.99956 -11.90463 -11.71626 -11.29419 -11.27737 -11.09915 -10.76132 -9.63010 -9.41532 -8.32880 -6.36305 1.25986 1.27974 1.38532 2.27646 2.96078 3.18119 3.29797 3.41871 3.84312 4.13534 4.17970 4.35645 4.45140 4.52757 4.53430 4.59362 4.70672 4.75352 4.77581 4.85905 4.95748 5.01306 5.07832 5.11701 5.19947 5.28015 5.31334 5.66007 5.74746 5.83924 6.05472 6.42218 6.60734 6.71156 7.29546 8.84680 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.044601 B = 0.008883 C = 0.008750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.631127 B = 3151.161227 C = 3199.052754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.151 3.849 3 H 0.006 0.994 4 C -0.501 4.501 5 H 0.028 0.972 6 C 0.012 3.988 7 N -0.948 5.948 8 Si 0.938 3.062 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.247 1.247 12 N -0.486 5.486 13 C 0.015 3.985 14 C -0.110 4.110 15 C 0.026 3.974 16 C -0.143 4.143 17 C 0.046 3.954 18 N -0.676 5.676 19 C 0.076 3.924 20 H 0.040 0.960 21 H 0.043 0.957 22 H 0.057 0.943 23 H 0.266 0.734 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.340 0.660 33 H 0.087 0.913 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 5.857 16.263 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.043 3.957 3 H 0.024 0.976 4 C -0.540 4.540 5 H 0.047 0.953 6 C -0.185 4.185 7 N -0.588 5.588 8 Si 0.762 3.238 9 H -0.193 1.193 10 H -0.210 1.210 11 H -0.171 1.171 12 N -0.209 5.209 13 C -0.114 4.114 14 C -0.112 4.112 15 C -0.103 4.103 16 C -0.183 4.183 17 C -0.084 4.084 18 N -0.301 5.301 19 C -0.054 4.054 20 H 0.059 0.941 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.111 0.889 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.155 0.845 33 H 0.105 0.895 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.592 4.847 16.586 17.290 hybrid contribution 0.454 1.812 -1.857 2.635 sum 1.045 6.660 14.728 16.198 Atomic orbital electron populations 1.21847 0.96344 1.00769 0.99852 1.20118 0.93704 0.91848 0.90077 0.97605 1.21060 1.42713 0.93869 0.96342 0.95318 1.25885 0.94468 1.03378 0.94803 1.70052 1.48327 1.37844 1.02611 0.85877 0.79830 0.80302 0.77776 1.19311 1.20974 1.17082 1.68577 1.03931 1.47124 1.01263 1.23830 0.96695 0.98345 0.92519 1.22961 0.96019 0.98203 0.94021 1.23617 0.93205 0.98962 0.94536 1.22814 1.01086 0.97306 0.97045 1.23085 1.01821 0.87222 0.96265 1.63395 1.05117 1.20909 1.40727 1.22542 0.95351 0.94824 0.92684 0.94086 0.93748 0.92394 0.92498 0.88854 0.91661 0.93228 0.91482 0.91527 0.89917 0.89421 0.89669 0.84488 0.89505 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 9.16 71.98 0.66 -4.81 16 2 C 0.15 7.08 1.37 44.17 0.06 7.14 16 3 H 0.01 0.30 4.78 -2.39 -0.01 0.28 16 4 C -0.50 -29.19 8.95 25.60 0.23 -28.96 16 5 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 6 C 0.01 0.70 5.47 84.66 0.46 1.16 16 7 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 8 Si 0.94 44.17 26.99 68.60 1.85 46.02 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.25 -10.75 6.82 99.48 0.68 -10.07 16 12 N -0.49 -19.96 5.97 -903.99 -5.40 -25.36 16 13 C 0.02 0.47 5.85 86.01 0.50 0.97 16 14 C -0.11 -3.06 1.20 -52.01 -0.06 -3.13 16 15 C 0.03 0.96 6.88 86.01 0.59 1.55 16 16 C -0.14 -3.14 6.52 31.25 0.20 -2.94 16 17 C 0.05 0.85 7.49 86.53 0.65 1.50 16 18 N -0.68 -15.06 7.63 -501.30 -3.82 -18.88 16 19 C 0.08 1.95 6.87 86.06 0.59 2.55 16 20 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 21 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 22 H 0.06 2.01 6.86 -2.39 -0.02 2.00 16 23 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 24 H 0.09 2.63 8.05 -2.39 -0.02 2.61 16 25 H 0.07 1.96 7.64 -2.39 -0.02 1.94 16 26 H 0.05 1.93 7.61 -2.39 -0.02 1.91 16 27 H 0.07 2.59 8.02 -2.39 -0.02 2.57 16 28 H 0.07 1.50 7.95 -2.39 -0.02 1.48 16 29 H 0.08 1.65 7.94 -2.39 -0.02 1.63 16 30 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.34 7.17 8.92 -89.70 -0.80 6.37 16 33 H 0.09 2.14 8.05 -2.39 -0.02 2.12 16 34 H 0.07 1.92 7.89 -2.39 -0.02 1.90 16 Total: -1.00 -65.69 268.00 -2.94 -68.63 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.24 Total: 14.10 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 3.89 Total: -24.96 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -8.92 Total: -103.79 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.85 Total: 46.02 kcal Total: -65.69 -2.94 -68.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724087603.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.026 kcal (2) G-P(sol) polarization free energy of solvation -65.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds