Wall clock time and date at job start Mon Mar 30 2020 03:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.47706 * 110.99842 * 156.29210 * 12 2 1 14 14 C 1.52310 * 87.61535 * 222.20537 * 13 12 2 15 15 C 1.47705 * 110.99999 * 60.00497 * 12 2 1 16 16 C 1.53144 * 116.31180 * 268.37883 * 14 13 12 17 17 C 1.54682 * 104.57469 * 228.47615 * 16 14 13 18 18 N 1.48656 * 104.65973 * 23.67384 * 17 16 14 19 19 C 1.48838 * 104.43341 * 321.21213 * 18 17 16 20 20 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 21 21 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 24 24 H 1.09004 * 113.52810 * 336.88959 * 13 12 2 25 25 H 1.08999 * 113.52959 * 107.52308 * 13 12 2 26 26 H 1.08997 * 113.52916 * 252.47966 * 15 12 2 27 27 H 1.08999 * 113.52753 * 23.04081 * 15 12 2 28 28 H 1.09004 * 110.41261 * 347.25014 * 16 14 13 29 29 H 1.08998 * 110.41444 * 109.57609 * 16 14 13 30 30 H 1.08997 * 110.40316 * 142.47736 * 17 16 14 31 31 H 1.09003 * 110.39649 * 264.88219 * 17 16 14 32 32 H 1.00899 * 110.99908 * 201.52740 * 18 17 16 33 33 H 1.09000 * 110.46965 * 279.68296 * 19 18 17 34 34 H 1.09005 * 110.47251 * 157.08216 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0196 -0.6926 -1.1994 13 6 3.3864 -0.2515 -1.5444 14 6 2.9422 -0.2268 -3.0011 15 6 1.5460 -0.0228 -2.4278 16 6 3.1668 -1.5132 -3.8012 17 6 3.8441 -1.0441 -5.1103 18 7 4.4780 0.2545 -4.7616 19 6 3.4965 0.9159 -3.8591 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.9040 -0.5274 4.4375 24 1 3.6387 0.7327 -1.1497 25 1 4.1509 -0.9998 -1.3353 26 1 0.7728 -0.5799 -2.9567 27 1 1.2845 1.0248 -2.2789 28 1 3.8231 -2.1909 -3.2552 29 1 2.2147 -1.9983 -4.0161 30 1 4.5999 -1.7633 -5.4260 31 1 3.0998 -0.9051 -5.8945 32 1 4.6415 0.8104 -5.5876 33 1 2.6981 1.3795 -4.4385 34 1 3.9936 1.6565 -3.2325 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724087604.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:59 Heat of formation + Delta-G solvation = 48.098488 kcal Electronic energy + Delta-G solvation = -14442.540315 eV Core-core repulsion = 12183.624575 eV Total energy + Delta-G solvation = -2258.915740 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.40467 -36.72442 -33.44145 -31.18785 -29.29264 -27.83639 -26.05092 -24.44672 -23.15308 -21.59082 -19.53065 -18.26745 -16.74287 -16.31540 -15.35357 -14.98796 -14.40608 -14.14385 -13.70643 -12.89731 -12.85671 -12.56641 -12.22507 -12.09509 -11.93289 -11.43311 -11.33103 -10.89477 -10.78508 -10.27926 -10.21087 -10.01344 -9.85457 -9.38083 -9.13338 -8.59223 -8.55173 -7.88963 -6.05625 -4.03702 3.25399 3.34234 3.37371 4.22067 4.39546 4.56190 4.76971 4.91558 5.15018 5.24690 5.26069 5.45300 5.62757 5.80524 5.81634 5.93472 6.03057 6.09127 6.11562 6.22312 6.30542 6.33924 6.44642 6.49532 6.60394 6.72500 6.79201 6.95866 7.27930 7.40653 7.77642 7.94251 8.64655 9.03802 9.56269 11.07802 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057299 B = 0.008086 C = 0.007846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.546967 B = 3461.860660 C = 3567.719863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.149 3.851 3 H 0.005 0.995 4 C -0.500 4.500 5 H 0.080 0.920 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.450 5.450 13 C 0.033 3.967 14 C -0.098 4.098 15 C 0.005 3.995 16 C -0.090 4.090 17 C 0.035 3.965 18 N -0.666 5.666 19 C 0.050 3.950 20 H 0.027 0.973 21 H 0.060 0.940 22 H 0.042 0.958 23 H 0.264 0.736 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.331 0.669 33 H 0.040 0.960 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.464 3.412 -15.643 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.040 3.960 3 H 0.023 0.977 4 C -0.538 4.538 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.172 5.172 13 C -0.096 4.096 14 C -0.099 4.099 15 C -0.124 4.124 16 C -0.128 4.128 17 C -0.095 4.095 18 N -0.294 5.294 19 C -0.080 4.080 20 H 0.046 0.954 21 H 0.079 0.921 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.145 0.855 33 H 0.059 0.941 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.784 2.455 -14.749 14.973 hybrid contribution -1.326 2.041 -0.332 2.456 sum -0.542 4.496 -15.081 15.746 Atomic orbital electron populations 1.22175 0.98573 1.01346 0.98334 1.20261 0.91766 0.93059 0.90871 0.97734 1.20875 1.31662 1.13532 0.87731 0.90147 1.24940 0.95900 0.96613 0.95830 1.69884 1.45779 1.40299 0.97843 0.86879 0.80762 0.83846 0.76803 1.20584 1.22398 1.19574 1.68981 1.02898 1.44754 1.00616 1.23506 0.94612 1.00163 0.91302 1.22022 0.97181 0.95262 0.95419 1.23674 0.95632 0.98359 0.94768 1.21877 1.00619 0.96152 0.94118 1.23024 0.97048 0.92499 0.96910 1.63733 1.42156 1.04836 1.18660 1.22774 0.93520 0.96444 0.95274 0.95376 0.92121 0.93946 0.92646 0.91825 0.90222 0.90739 0.92257 0.90405 0.91007 0.90402 0.94585 0.85476 0.94129 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.57 37.16 0.32 -2.97 16 2 C 0.15 3.60 1.30 -68.86 -0.09 3.51 16 3 H 0.01 0.13 6.58 -51.93 -0.34 -0.21 16 4 C -0.50 -14.41 9.26 -34.44 -0.32 -14.73 16 5 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 8 Si 0.89 22.24 24.37 -169.99 -4.14 18.10 16 9 H -0.28 -6.82 6.87 56.52 0.39 -6.43 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 11 H -0.27 -6.51 6.53 56.52 0.37 -6.14 16 12 N -0.45 -9.52 6.12 -238.13 -1.46 -10.97 16 13 C 0.03 0.63 6.84 -6.91 -0.05 0.58 16 14 C -0.10 -1.49 1.28 -155.01 -0.20 -1.69 16 15 C 0.01 0.09 5.78 -6.91 -0.04 0.05 16 16 C -0.09 -1.23 6.52 -25.77 -0.17 -1.40 16 17 C 0.03 0.39 7.50 -1.97 -0.01 0.38 16 18 N -0.67 -8.03 7.63 -109.83 -0.84 -8.86 16 19 C 0.05 0.64 6.92 -2.61 -0.02 0.63 16 20 H 0.03 0.53 7.01 -51.93 -0.36 0.17 16 21 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 22 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 23 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 24 H 0.06 1.23 7.40 -51.93 -0.38 0.85 16 25 H 0.08 1.56 7.93 -51.93 -0.41 1.15 16 26 H 0.07 1.18 7.93 -51.93 -0.41 0.76 16 27 H 0.06 0.99 7.62 -51.93 -0.40 0.59 16 28 H 0.08 1.14 7.83 -51.93 -0.41 0.73 16 29 H 0.07 0.95 7.83 -51.93 -0.41 0.54 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.33 3.20 8.93 -39.29 -0.35 2.85 16 33 H 0.04 0.48 8.13 -51.93 -0.42 0.06 16 34 H 0.08 1.08 7.86 -51.93 -0.41 0.68 16 LS Contribution 261.11 15.07 3.93 3.93 Total: -1.00 -30.79 261.11 -7.75 -38.54 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.35 Total: 0.13 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -0.67 Total: -13.73 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -1.52 Total: -46.98 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.79 -7.75 -38.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724087604.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.636 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds