Wall clock time and date at job start Mon Mar 30 2020 03:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.47706 * 110.99842 * 156.29210 * 12 2 1 14 14 C 1.52310 * 87.61535 * 222.20537 * 13 12 2 15 15 C 1.47705 * 110.99999 * 60.00497 * 12 2 1 16 16 C 1.53144 * 116.31180 * 268.37883 * 14 13 12 17 17 C 1.54682 * 104.57469 * 228.47615 * 16 14 13 18 18 N 1.48656 * 104.65973 * 23.67384 * 17 16 14 19 19 C 1.48838 * 104.43341 * 321.21213 * 18 17 16 20 20 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 21 21 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 24 24 H 1.09004 * 113.52810 * 336.88959 * 13 12 2 25 25 H 1.08999 * 113.52959 * 107.52308 * 13 12 2 26 26 H 1.08997 * 113.52916 * 252.47966 * 15 12 2 27 27 H 1.08999 * 113.52753 * 23.04081 * 15 12 2 28 28 H 1.09004 * 110.41261 * 347.25014 * 16 14 13 29 29 H 1.08998 * 110.41444 * 109.57609 * 16 14 13 30 30 H 1.08997 * 110.40316 * 142.47736 * 17 16 14 31 31 H 1.09003 * 110.39649 * 264.88219 * 17 16 14 32 32 H 1.00899 * 110.99908 * 201.52740 * 18 17 16 33 33 H 1.09000 * 110.46965 * 279.68296 * 19 18 17 34 34 H 1.09005 * 110.47251 * 157.08216 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0196 -0.6926 -1.1994 13 6 3.3864 -0.2515 -1.5444 14 6 2.9422 -0.2268 -3.0011 15 6 1.5460 -0.0228 -2.4278 16 6 3.1668 -1.5132 -3.8012 17 6 3.8441 -1.0441 -5.1103 18 7 4.4780 0.2545 -4.7616 19 6 3.4965 0.9159 -3.8591 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.9040 -0.5274 4.4375 24 1 3.6387 0.7327 -1.1497 25 1 4.1509 -0.9998 -1.3353 26 1 0.7728 -0.5799 -2.9567 27 1 1.2845 1.0248 -2.2789 28 1 3.8231 -2.1909 -3.2552 29 1 2.2147 -1.9983 -4.0161 30 1 4.5999 -1.7633 -5.4260 31 1 3.0998 -0.9051 -5.8945 32 1 4.6415 0.8104 -5.5876 33 1 2.6981 1.3795 -4.4385 34 1 3.9936 1.6565 -3.2325 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724087604.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:59 Heat of formation + Delta-G solvation = 22.254471 kcal Electronic energy + Delta-G solvation = -14443.660995 eV Core-core repulsion = 12183.624575 eV Total energy + Delta-G solvation = -2260.036421 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.77919 -37.98190 -35.36027 -33.14116 -30.35862 -29.15651 -27.80437 -26.23071 -24.65962 -22.59241 -21.30408 -19.52107 -18.85259 -17.59555 -16.75954 -16.46656 -15.97376 -15.70077 -14.97525 -14.76333 -14.33315 -14.05178 -13.85587 -13.72020 -13.00153 -12.80583 -12.76294 -12.45890 -12.34536 -12.02356 -11.82147 -11.65926 -11.28609 -11.21326 -11.00617 -10.74450 -9.54084 -9.47658 -8.32020 -6.35880 1.26731 1.31634 1.42447 2.28358 3.00699 3.12985 3.26252 3.60736 3.73423 4.01849 4.18424 4.35960 4.40030 4.50277 4.53724 4.58435 4.64482 4.72716 4.80748 4.82031 4.91039 4.92868 4.99076 5.03344 5.20999 5.23577 5.34967 5.59931 5.76641 5.80526 6.06033 6.50272 6.61043 6.69729 7.28751 8.85570 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057299 B = 0.008086 C = 0.007846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.546967 B = 3461.860660 C = 3567.719863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.153 3.847 3 H 0.001 0.999 4 C -0.509 4.509 5 H 0.029 0.971 6 C 0.009 3.991 7 N -0.950 5.950 8 Si 0.954 3.046 9 H -0.263 1.263 10 H -0.296 1.296 11 H -0.249 1.249 12 N -0.477 5.477 13 C 0.024 3.976 14 C -0.082 4.082 15 C 0.011 3.989 16 C -0.094 4.094 17 C 0.042 3.958 18 N -0.678 5.678 19 C 0.055 3.945 20 H 0.066 0.934 21 H 0.052 0.948 22 H 0.036 0.964 23 H 0.267 0.733 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.348 0.652 33 H 0.063 0.937 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 5.207 -18.187 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.044 3.956 3 H 0.019 0.981 4 C -0.547 4.547 5 H 0.047 0.953 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.781 3.219 9 H -0.189 1.189 10 H -0.223 1.223 11 H -0.173 1.173 12 N -0.200 5.200 13 C -0.105 4.105 14 C -0.083 4.083 15 C -0.119 4.119 16 C -0.132 4.132 17 C -0.087 4.087 18 N -0.308 5.308 19 C -0.075 4.075 20 H 0.085 0.915 21 H 0.071 0.929 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.082 0.918 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.604 4.248 -17.336 17.859 hybrid contribution -0.786 1.364 0.442 1.635 sum -1.390 5.612 -16.894 17.856 Atomic orbital electron populations 1.22072 0.96687 1.01381 0.99851 1.20084 0.93125 0.92134 0.90233 0.98108 1.21133 1.30927 1.12247 0.90385 0.95310 1.25865 0.97481 1.00246 0.95204 1.70050 1.47769 1.42621 0.98598 0.85770 0.79154 0.79624 0.77367 1.18929 1.22334 1.17323 1.68895 1.04298 1.45621 1.01148 1.23544 0.93401 0.98912 0.94678 1.21908 0.95534 0.97345 0.93521 1.23741 0.96952 0.98716 0.92440 1.21914 1.00977 0.95190 0.95102 1.22994 0.97631 0.92224 0.95844 1.63682 1.42098 1.05343 1.19662 1.22684 0.94273 0.95282 0.95233 0.91537 0.92932 0.94555 0.92452 0.92607 0.92355 0.89021 0.91259 0.92266 0.90243 0.89535 0.92369 0.83595 0.91836 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.06 8.57 71.98 0.62 -5.44 16 2 C 0.15 7.34 1.30 44.17 0.06 7.39 16 3 H 0.00 0.07 6.58 -2.39 -0.02 0.05 16 4 C -0.51 -30.35 9.26 25.60 0.24 -30.11 16 5 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 6 C 0.01 0.54 5.45 84.65 0.46 1.00 16 7 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 8 Si 0.95 45.56 24.37 68.60 1.67 47.24 16 9 H -0.26 -11.88 6.87 99.48 0.68 -11.20 16 10 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 11 H -0.25 -10.96 6.53 99.48 0.65 -10.31 16 12 N -0.48 -20.05 6.12 -907.31 -5.55 -25.60 16 13 C 0.02 0.92 6.84 83.86 0.57 1.49 16 14 C -0.08 -2.35 1.28 -52.50 -0.07 -2.42 16 15 C 0.01 0.33 5.78 83.86 0.48 0.82 16 16 C -0.09 -2.40 6.52 31.22 0.20 -2.20 16 17 C 0.04 0.82 7.50 86.54 0.65 1.47 16 18 N -0.68 -14.28 7.63 -501.38 -3.82 -18.11 16 19 C 0.05 1.27 6.92 86.02 0.60 1.86 16 20 H 0.07 2.29 7.01 -2.39 -0.02 2.28 16 21 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 22 H 0.04 1.57 3.27 -2.39 -0.01 1.57 16 23 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 24 H 0.06 2.20 7.40 -2.39 -0.02 2.18 16 25 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 26 H 0.09 2.56 7.93 -2.39 -0.02 2.54 16 27 H 0.07 2.05 7.62 -2.39 -0.02 2.03 16 28 H 0.06 1.72 7.83 -2.39 -0.02 1.71 16 29 H 0.08 1.91 7.83 -2.39 -0.02 1.89 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.35 5.47 8.93 -89.69 -0.80 4.67 16 33 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 34 H 0.08 1.84 7.86 -2.38 -0.02 1.82 16 Total: -1.00 -68.62 261.11 -3.39 -72.01 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.20 Total: 11.32 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 3.81 Total: -26.14 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -9.07 Total: -104.43 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.67 Total: 47.24 kcal Total: -68.62 -3.39 -72.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724087604.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.268 kcal (2) G-P(sol) polarization free energy of solvation -68.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds