Wall clock time and date at job start Mon Mar 30 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99713 * 2 1 4 4 H 1.48499 * 109.47165 * 270.00225 * 3 2 1 5 5 H 1.48498 * 109.47258 * 30.00082 * 3 2 1 6 6 H 1.48500 * 109.46936 * 149.99927 * 3 2 1 7 7 C 1.37868 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00375 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47537 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47591 * 180.02562 * 10 9 7 12 12 C 1.48164 * 111.00412 * 170.00402 * 11 10 9 13 13 C 1.52871 * 85.97130 * 223.17165 * 12 11 10 14 14 C 1.48409 * 111.08407 * 70.48805 * 11 10 9 15 15 C 1.53617 * 115.53718 * 265.93382 * 13 12 11 16 16 C 1.55160 * 102.62752 * 208.60794 * 15 13 12 17 17 N 1.48624 * 103.38683 * 36.54663 * 16 15 13 18 18 C 1.48192 * 105.87770 * 321.38253 * 17 16 15 19 19 H 0.96998 * 120.00144 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.46897 * 59.99585 * 9 7 2 21 21 H 1.08999 * 109.46967 * 300.00220 * 9 7 2 22 22 H 1.09007 * 109.47249 * 59.99943 * 10 9 7 23 23 H 1.08999 * 109.47288 * 300.00166 * 10 9 7 24 24 H 1.09002 * 113.81708 * 108.88011 * 12 11 10 25 25 H 1.09005 * 113.81247 * 337.45879 * 12 11 10 26 26 H 1.09001 * 113.70075 * 22.52241 * 14 11 10 27 27 H 1.08998 * 114.00283 * 251.03240 * 14 11 10 28 28 H 1.09002 * 110.77687 * 326.89477 * 15 13 12 29 29 H 1.08996 * 110.77648 * 90.31968 * 15 13 12 30 30 H 1.09000 * 110.63582 * 278.07363 * 16 15 13 31 31 H 1.09000 * 110.64164 * 155.02532 * 16 15 13 32 32 H 1.00901 * 111.00267 * 81.93238 * 17 16 15 33 33 H 1.08995 * 110.03411 * 265.83334 * 18 17 16 34 34 H 1.09007 * 110.02764 * 144.40923 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5110 -4.9342 -0.0024 12 6 2.4252 -6.0750 -0.2438 13 6 1.3426 -6.6040 -1.1846 14 6 0.8430 -5.1644 -1.3075 15 6 0.3509 -7.5976 -0.5608 16 6 -0.0686 -8.4662 -1.7761 17 7 1.1840 -8.5776 -2.5682 18 6 1.8395 -7.2516 -2.4789 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5566 -0.8903 21 1 0.6249 -2.5571 0.8897 22 1 2.8728 -3.6046 0.8877 23 1 2.8714 -3.6038 -0.8922 24 1 2.5898 -6.7004 0.6337 25 1 3.3505 -5.7982 -0.7491 26 1 1.2918 -4.6118 -2.1330 27 1 -0.2424 -5.0708 -1.2727 28 1 0.8402 -8.2066 0.1993 29 1 -0.5097 -7.0746 -0.1438 30 1 -0.8460 -7.9673 -2.3548 31 1 -0.4043 -9.4499 -1.4477 32 1 1.7819 -9.3020 -2.1995 33 1 1.5589 -6.6379 -3.3349 34 1 2.9224 -7.3719 -2.4442 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724087660.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:53 Heat of formation + Delta-G solvation = 27.363599 kcal Electronic energy + Delta-G solvation = -13973.128439 eV Core-core repulsion = 11713.313567 eV Total energy + Delta-G solvation = -2259.814872 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.47691 -36.70378 -33.35802 -31.07391 -29.24654 -27.97149 -25.94688 -24.85525 -22.22787 -21.92271 -19.90901 -18.42673 -16.56194 -16.42840 -15.36274 -14.79734 -14.59040 -14.09617 -13.99446 -13.44592 -12.75866 -12.61267 -12.28317 -11.98103 -11.80948 -11.32307 -11.11522 -10.98913 -10.81735 -10.54837 -10.38159 -10.16908 -9.84786 -9.32404 -9.14187 -8.72650 -8.36123 -8.15923 -6.00049 -4.03013 3.31495 3.37656 3.41025 4.10355 4.39562 4.42625 4.51461 4.66250 5.09371 5.20248 5.35227 5.35816 5.43951 5.64102 5.71596 5.76324 5.86360 5.94452 5.99888 6.04688 6.12005 6.22433 6.25251 6.41176 6.66208 6.83048 7.10902 7.24493 7.47445 7.71858 7.86706 8.05639 8.41919 9.04089 9.60865 11.11345 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.071398 B = 0.005847 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.072592 B = 4787.447535 C = 4873.649663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.029 3.971 10 C 0.029 3.971 11 N -0.478 5.478 12 C 0.011 3.989 13 C -0.120 4.120 14 C 0.027 3.973 15 C -0.126 4.126 16 C 0.041 3.959 17 N -0.677 5.677 18 C 0.053 3.947 19 H 0.261 0.739 20 H 0.015 0.985 21 H 0.023 0.977 22 H 0.061 0.939 23 H 0.026 0.974 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.333 0.667 33 H 0.079 0.921 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.376 -15.315 -3.024 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.099 4.099 11 N -0.200 5.200 12 C -0.118 4.118 13 C -0.122 4.122 14 C -0.102 4.102 15 C -0.165 4.165 16 C -0.088 4.088 17 N -0.303 5.303 18 C -0.077 4.077 19 H 0.070 0.930 20 H 0.034 0.966 21 H 0.041 0.959 22 H 0.080 0.920 23 H 0.044 0.956 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.098 0.902 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.552 -15.071 -3.096 15.463 hybrid contribution 1.374 1.220 0.289 1.860 sum 2.926 -13.850 -2.807 14.432 Atomic orbital electron populations 1.69977 1.06048 1.26600 1.50630 1.25000 0.94834 0.99206 0.95261 0.86588 0.79843 0.83452 0.78080 1.20673 1.21156 1.19884 1.21192 0.92953 0.91074 1.50939 0.92812 1.19020 0.93864 0.90233 0.97712 1.22807 0.97435 0.90377 0.99232 1.68648 1.18932 1.02882 1.29534 1.23853 0.94832 0.95047 0.98112 1.22915 0.97145 0.96160 0.95995 1.23760 1.01159 0.92528 0.92715 1.22719 0.99074 0.96857 0.97802 1.23191 0.93560 0.99419 0.92657 1.62809 1.06756 1.05624 1.55133 1.22691 0.98122 0.90282 0.96649 0.92975 0.96647 0.95863 0.92013 0.95598 0.90242 0.91750 0.91203 0.89753 0.91410 0.90026 0.90155 0.90999 0.85187 0.90219 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.78 5.04 -27.89 -0.14 0.64 16 10 C 0.03 0.64 4.76 -3.83 -0.02 0.62 16 11 N -0.48 -8.93 6.26 -242.39 -1.52 -10.45 16 12 C 0.01 0.16 7.16 -3.19 -0.02 0.14 16 13 C -0.12 -1.60 1.15 -154.41 -0.18 -1.78 16 14 C 0.03 0.46 6.24 -3.06 -0.02 0.44 16 15 C -0.13 -1.48 6.44 -25.27 -0.16 -1.65 16 16 C 0.04 0.43 7.56 -1.73 -0.01 0.42 16 17 N -0.68 -7.35 7.53 -110.21 -0.83 -8.18 16 18 C 0.05 0.62 7.08 -3.10 -0.02 0.60 16 19 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 20 H 0.02 0.43 7.54 -51.92 -0.39 0.04 16 21 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 23 H 0.03 0.55 7.71 -51.93 -0.40 0.15 16 24 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 25 H 0.06 0.92 7.75 -51.93 -0.40 0.51 16 26 H 0.07 1.21 7.78 -51.93 -0.40 0.81 16 27 H 0.08 1.45 8.01 -51.93 -0.42 1.03 16 28 H 0.07 0.75 8.04 -51.93 -0.42 0.33 16 29 H 0.08 1.05 7.88 -51.93 -0.41 0.64 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.33 3.06 8.92 -39.29 -0.35 2.71 16 33 H 0.08 1.00 7.94 -51.93 -0.41 0.59 16 34 H 0.07 0.72 7.91 -51.93 -0.41 0.31 16 LS Contribution 274.05 15.07 4.13 4.13 Total: -1.00 -30.59 274.05 -9.15 -39.74 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.66 Total: -1.17 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -0.99 Total: -14.38 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -1.61 Total: -45.17 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.59 -9.15 -39.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724087660.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.105 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds