Wall clock time and date at job start Mon Mar 30 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99713 * 2 1 4 4 H 1.48499 * 109.47165 * 270.00225 * 3 2 1 5 5 H 1.48498 * 109.47258 * 30.00082 * 3 2 1 6 6 H 1.48500 * 109.46936 * 149.99927 * 3 2 1 7 7 C 1.37868 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00375 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47537 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47591 * 180.02562 * 10 9 7 12 12 C 1.48164 * 111.00412 * 170.00402 * 11 10 9 13 13 C 1.52871 * 85.97130 * 223.17165 * 12 11 10 14 14 C 1.48409 * 111.08407 * 70.48805 * 11 10 9 15 15 C 1.53617 * 115.53718 * 265.93382 * 13 12 11 16 16 C 1.55160 * 102.62752 * 208.60794 * 15 13 12 17 17 N 1.48624 * 103.38683 * 36.54663 * 16 15 13 18 18 C 1.48192 * 105.87770 * 321.38253 * 17 16 15 19 19 H 0.96998 * 120.00144 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.46897 * 59.99585 * 9 7 2 21 21 H 1.08999 * 109.46967 * 300.00220 * 9 7 2 22 22 H 1.09007 * 109.47249 * 59.99943 * 10 9 7 23 23 H 1.08999 * 109.47288 * 300.00166 * 10 9 7 24 24 H 1.09002 * 113.81708 * 108.88011 * 12 11 10 25 25 H 1.09005 * 113.81247 * 337.45879 * 12 11 10 26 26 H 1.09001 * 113.70075 * 22.52241 * 14 11 10 27 27 H 1.08998 * 114.00283 * 251.03240 * 14 11 10 28 28 H 1.09002 * 110.77687 * 326.89477 * 15 13 12 29 29 H 1.08996 * 110.77648 * 90.31968 * 15 13 12 30 30 H 1.09000 * 110.63582 * 278.07363 * 16 15 13 31 31 H 1.09000 * 110.64164 * 155.02532 * 16 15 13 32 32 H 1.00901 * 111.00267 * 81.93238 * 17 16 15 33 33 H 1.08995 * 110.03411 * 265.83334 * 18 17 16 34 34 H 1.09007 * 110.02764 * 144.40923 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5110 -4.9342 -0.0024 12 6 2.4252 -6.0750 -0.2438 13 6 1.3426 -6.6040 -1.1846 14 6 0.8430 -5.1644 -1.3075 15 6 0.3509 -7.5976 -0.5608 16 6 -0.0686 -8.4662 -1.7761 17 7 1.1840 -8.5776 -2.5682 18 6 1.8395 -7.2516 -2.4789 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5566 -0.8903 21 1 0.6249 -2.5571 0.8897 22 1 2.8728 -3.6046 0.8877 23 1 2.8714 -3.6038 -0.8922 24 1 2.5898 -6.7004 0.6337 25 1 3.3505 -5.7982 -0.7491 26 1 1.2918 -4.6118 -2.1330 27 1 -0.2424 -5.0708 -1.2727 28 1 0.8402 -8.2066 0.1993 29 1 -0.5097 -7.0746 -0.1438 30 1 -0.8460 -7.9673 -2.3548 31 1 -0.4043 -9.4499 -1.4477 32 1 1.7819 -9.3020 -2.1995 33 1 1.5589 -6.6379 -3.3349 34 1 2.9224 -7.3719 -2.4442 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724087660.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:53 Heat of formation + Delta-G solvation = 3.645497 kcal Electronic energy + Delta-G solvation = -13974.156933 eV Core-core repulsion = 11713.313567 eV Total energy + Delta-G solvation = -2260.843366 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.69793 -37.86300 -35.43836 -32.88532 -30.22817 -29.48697 -27.25585 -26.61176 -23.92141 -22.84138 -21.61332 -19.54138 -18.60006 -17.50364 -16.69518 -16.61376 -16.17899 -15.55595 -15.00893 -14.70004 -14.39821 -14.11145 -13.78950 -13.44903 -13.02788 -12.94374 -12.73456 -12.46861 -12.26296 -12.03267 -11.91626 -11.53497 -11.42040 -11.29350 -11.05164 -10.60097 -9.82271 -9.44996 -8.23636 -6.36342 1.38054 1.40081 1.51323 2.37830 2.97026 3.09531 3.28970 3.40804 3.57915 4.09572 4.21108 4.24924 4.40823 4.42000 4.50071 4.54844 4.57487 4.69370 4.77695 4.86438 4.97869 5.01369 5.03925 5.21161 5.28386 5.37032 5.45092 5.65349 5.73338 5.77163 6.09581 6.26205 6.50759 6.80438 7.33483 8.88681 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.071398 B = 0.005847 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.072592 B = 4787.447535 C = 4873.649663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.037 3.963 10 C 0.047 3.953 11 N -0.500 5.500 12 C 0.016 3.984 13 C -0.104 4.104 14 C 0.019 3.981 15 C -0.124 4.124 16 C 0.046 3.954 17 N -0.678 5.678 18 C 0.057 3.943 19 H 0.265 0.735 20 H -0.010 1.010 21 H -0.013 1.013 22 H 0.061 0.939 23 H 0.031 0.969 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.347 0.653 33 H 0.069 0.931 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 -16.295 -3.245 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.000 4.000 10 C -0.082 4.082 11 N -0.222 5.222 12 C -0.112 4.112 13 C -0.106 4.106 14 C -0.110 4.110 15 C -0.163 4.163 16 C -0.083 4.083 17 N -0.306 5.306 18 C -0.073 4.073 19 H 0.073 0.927 20 H 0.008 0.992 21 H 0.006 0.994 22 H 0.079 0.921 23 H 0.049 0.951 24 H 0.114 0.886 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.163 0.837 33 H 0.088 0.912 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.045 -16.080 -3.319 16.699 hybrid contribution 0.856 1.484 0.363 1.751 sum 3.901 -14.596 -2.956 15.395 Atomic orbital electron populations 1.70119 1.07954 1.27899 1.51319 1.26011 0.95766 1.03510 0.94436 0.85384 0.78617 0.78059 0.78604 1.19576 1.20610 1.18627 1.21623 0.93529 0.92233 1.51164 0.92091 1.18842 0.94127 0.92326 0.94697 1.22459 0.96056 0.90325 0.99331 1.68600 1.20219 1.02509 1.30883 1.23948 0.94925 0.93170 0.99196 1.22793 0.96570 0.94380 0.96826 1.23775 1.00226 0.95423 0.91579 1.22729 0.98204 0.96673 0.98699 1.23174 0.93200 1.00264 0.91658 1.62760 1.07041 1.05352 1.55430 1.22607 0.99096 0.90551 0.95047 0.92673 0.99157 0.99425 0.92082 0.95115 0.88645 0.90781 0.92170 0.91155 0.89912 0.91566 0.91099 0.88598 0.83676 0.91232 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.25 13.29 21.45 0.28 -57.96 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -32.09 9.11 25.60 0.23 -31.86 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.04 2.09 5.04 29.85 0.15 2.24 16 10 C 0.05 2.05 4.76 86.30 0.41 2.46 16 11 N -0.50 -18.75 6.26 -920.79 -5.77 -24.52 16 12 C 0.02 0.45 7.16 86.02 0.62 1.06 16 13 C -0.10 -2.63 1.15 -52.02 -0.06 -2.69 16 14 C 0.02 0.65 6.24 85.97 0.54 1.19 16 15 C -0.12 -2.72 6.44 31.54 0.20 -2.51 16 16 C 0.05 0.86 7.56 86.71 0.66 1.52 16 17 N -0.68 -12.89 7.53 -502.61 -3.78 -16.67 16 18 C 0.06 1.23 7.08 86.06 0.61 1.84 16 19 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 20 H -0.01 -0.59 7.54 -2.38 -0.02 -0.61 16 21 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 22 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 23 H 0.03 1.30 7.71 -2.39 -0.02 1.29 16 24 H 0.10 2.36 8.04 -2.39 -0.02 2.34 16 25 H 0.07 1.93 7.75 -2.38 -0.02 1.92 16 26 H 0.06 2.16 7.78 -2.39 -0.02 2.14 16 27 H 0.07 2.55 8.01 -2.39 -0.02 2.53 16 28 H 0.08 1.60 8.04 -2.39 -0.02 1.58 16 29 H 0.07 1.67 7.88 -2.39 -0.02 1.65 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.35 5.16 8.92 -89.69 -0.80 4.36 16 33 H 0.07 1.67 7.94 -2.39 -0.02 1.65 16 34 H 0.08 1.54 7.91 -2.38 -0.02 1.52 16 Total: -1.00 -66.48 274.05 -3.16 -69.64 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.26 Total: 8.87 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 3.82 Total: -26.24 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -9.27 Total: -99.16 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.48 -3.16 -69.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724087660.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.289 kcal (2) G-P(sol) polarization free energy of solvation -66.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds