Wall clock time and date at job start Mon Mar 30 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86788 * 120.00409 * 2 1 4 4 H 1.48504 * 109.47561 * 239.99961 * 3 2 1 5 5 H 1.48497 * 109.47419 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47360 * 120.00166 * 3 2 1 7 7 C 1.37879 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99944 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47123 * 184.83126 * 9 7 2 11 11 C 1.47090 * 111.00018 * 301.72515 * 10 9 7 12 12 C 1.51386 * 109.01508 * 187.77798 * 11 10 9 13 13 C 1.53104 * 111.10800 * 299.69587 * 12 11 10 14 14 H 1.09005 * 112.41888 * 285.46388 * 13 12 11 15 15 C 1.55823 * 107.43881 * 160.85889 * 13 12 11 16 16 C 1.54436 * 102.80685 * 281.19463 * 15 13 12 17 17 N 1.47754 * 107.13965 * 337.23926 * 16 15 13 18 18 C 1.47037 * 107.97195 * 358.76954 * 17 16 15 19 19 H 1.09002 * 108.23165 * 268.76598 * 18 17 16 20 20 C 1.46704 * 110.99713 * 64.55205 * 10 9 7 21 21 H 0.97009 * 119.99454 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47396 * 64.83740 * 9 7 2 23 23 H 1.08999 * 109.47290 * 304.83412 * 9 7 2 24 24 H 1.09000 * 109.59630 * 307.95000 * 11 10 9 25 25 H 1.08996 * 109.59505 * 68.39606 * 11 10 9 26 26 H 1.08999 * 109.64422 * 178.74081 * 12 11 10 27 27 H 1.09002 * 108.10613 * 59.64914 * 12 11 10 28 28 H 1.08998 * 110.74098 * 39.52673 * 15 13 12 29 29 H 1.09002 * 110.73985 * 162.68456 * 15 13 12 30 30 H 1.08996 * 109.90296 * 96.61334 * 16 15 13 31 31 H 1.09001 * 109.90653 * 217.67806 * 16 15 13 32 32 H 1.00900 * 111.00531 * 236.89548 * 17 16 15 33 33 H 1.08999 * 109.13111 * 296.04583 * 20 10 9 34 34 H 1.08999 * 109.13468 * 55.21565 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2011 -3.6134 0.1155 11 6 3.1750 -3.5925 -0.9866 12 6 4.0061 -4.8568 -0.9344 13 6 4.7676 -4.9618 0.3896 14 1 5.6173 -4.2804 0.4356 15 6 5.1806 -6.4529 0.5739 16 6 3.8743 -7.1112 1.0692 17 7 3.0455 -6.0416 1.6625 18 6 3.7995 -4.7823 1.5754 19 1 4.3785 -4.6673 2.4918 20 6 2.8982 -3.5776 1.4058 21 1 -0.4850 0.8402 0.0004 22 1 0.6903 -2.5952 -0.9305 23 1 0.5611 -2.5205 0.8432 24 1 2.6480 -3.5366 -1.9391 25 1 3.8311 -2.7290 -0.8783 26 1 4.7169 -4.8624 -1.7607 27 1 3.3332 -5.7088 -1.0319 28 1 5.4956 -6.8863 -0.3753 29 1 5.9699 -6.5455 1.3199 30 1 3.3474 -7.5669 0.2309 31 1 4.1015 -7.8680 1.8200 32 1 2.8092 -6.2560 2.6198 33 1 3.5001 -2.6706 1.4616 34 1 2.1619 -3.5675 2.2095 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885174325.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:23 Heat of formation + Delta-G solvation = 2.282357 kcal Electronic energy + Delta-G solvation = -14611.127493 eV Core-core repulsion = 12350.225016 eV Total energy + Delta-G solvation = -2260.902477 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.56236 -35.92134 -32.66404 -31.74387 -29.69558 -28.34607 -26.16648 -23.64476 -22.31899 -20.81721 -20.53016 -18.55910 -16.58050 -15.86297 -15.04520 -14.76714 -14.22748 -13.98876 -13.40353 -13.03778 -12.68084 -12.34277 -11.92115 -11.58605 -11.41809 -11.27674 -11.12529 -10.98511 -10.81770 -10.28771 -10.25252 -10.02281 -9.72459 -9.63737 -9.36054 -8.38009 -7.97701 -6.97715 -5.96006 -4.06147 3.30497 3.35642 3.37645 4.44031 4.47602 4.80499 4.89801 5.15391 5.22767 5.32695 5.45457 5.57721 5.79975 5.83354 5.88217 5.98176 6.13775 6.22475 6.32099 6.35037 6.48653 6.60791 6.75575 6.81748 6.97545 7.27847 7.43050 7.61003 7.71842 7.97558 8.20888 8.39880 8.48001 9.06185 9.60416 11.07814 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.055057 B = 0.008210 C = 0.007956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.438509 B = 3409.756594 C = 3518.583869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.186 3.814 10 N -0.518 5.518 11 C 0.063 3.937 12 C -0.104 4.104 13 C -0.091 4.091 14 H 0.080 0.920 15 C -0.142 4.142 16 C 0.051 3.949 17 N -0.661 5.661 18 C 0.089 3.911 19 H 0.032 0.968 20 C 0.079 3.921 21 H 0.262 0.738 22 H 0.027 0.973 23 H 0.033 0.967 24 H 0.064 0.936 25 H 0.031 0.969 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.332 0.668 33 H 0.038 0.962 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.208 -10.660 1.937 14.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.588 4.588 8 H 0.074 0.926 9 C 0.060 3.940 10 N -0.242 5.242 11 C -0.066 4.066 12 C -0.142 4.142 13 C -0.110 4.110 14 H 0.098 0.902 15 C -0.180 4.180 16 C -0.078 4.078 17 N -0.290 5.290 18 C -0.021 4.021 19 H 0.050 0.950 20 C -0.050 4.050 21 H 0.072 0.928 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.147 0.853 33 H 0.056 0.944 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.340 -10.884 1.334 13.777 hybrid contribution 1.629 1.694 0.802 2.483 sum 9.969 -9.191 2.136 13.726 Atomic orbital electron populations 1.69944 1.05984 1.26799 1.50269 1.24969 0.94753 0.99038 0.95064 0.86734 0.79704 0.83488 0.78528 1.20319 1.21210 1.20375 1.21780 0.93288 0.92277 1.51469 0.92626 1.19759 0.91074 0.85458 0.97721 1.62704 1.15752 1.45646 1.00105 1.21577 0.94170 0.95028 0.95819 1.21283 0.97822 1.00382 0.94681 1.22268 0.97157 0.95270 0.96297 0.90212 1.23039 0.97367 0.96472 1.01113 1.22591 0.92364 0.93773 0.99104 1.61524 1.43044 1.01303 1.23108 1.21793 0.93074 0.91314 0.95890 0.95014 1.21361 0.96118 0.93580 0.93982 0.92828 0.95462 0.94927 0.91772 0.95085 0.93118 0.91093 0.91109 0.92271 0.91083 0.93966 0.85289 0.94385 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.55 -15.35 7.71 -34.44 -0.27 -15.62 16 8 H 0.06 1.54 5.78 -52.49 -0.30 1.23 16 9 C 0.19 4.95 5.14 -4.97 -0.03 4.92 16 10 N -0.52 -11.62 4.94 -238.10 -1.18 -12.79 16 11 C 0.06 1.28 4.91 -4.54 -0.02 1.25 16 12 C -0.10 -1.70 5.05 -27.49 -0.14 -1.84 16 13 C -0.09 -1.35 3.67 -88.47 -0.32 -1.68 16 14 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.14 -1.71 6.33 -24.47 -0.15 -1.87 16 16 C 0.05 0.64 6.85 -2.60 -0.02 0.63 16 17 N -0.66 -9.99 7.05 -105.39 -0.74 -10.74 16 18 C 0.09 1.45 3.10 -67.85 -0.21 1.24 16 19 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 20 C 0.08 1.60 4.79 -4.74 -0.02 1.58 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.94 8.09 -51.93 -0.42 0.52 16 24 H 0.06 1.34 8.11 -51.93 -0.42 0.92 16 25 H 0.03 0.67 6.57 -51.93 -0.34 0.33 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.21 7.01 -51.93 -0.36 0.85 16 28 H 0.07 0.79 8.00 -51.93 -0.42 0.37 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.93 7.87 -51.93 -0.41 0.53 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.33 4.42 8.91 -39.29 -0.35 4.07 16 33 H 0.04 0.83 6.92 -51.93 -0.36 0.47 16 34 H 0.06 1.32 8.09 -51.93 -0.42 0.90 16 LS Contribution 261.64 15.07 3.94 3.94 Total: -1.00 -29.64 261.64 -9.01 -38.66 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.47 Total: -0.15 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.28 Total: -9.65 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -1.18 Total: -49.46 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.64 -9.01 -38.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885174325.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.940 kcal (2) G-P(sol) polarization free energy of solvation -29.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds