Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86788 * 120.00409 * 2 1 4 4 H 1.48504 * 109.47561 * 239.99961 * 3 2 1 5 5 H 1.48497 * 109.47419 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47360 * 120.00166 * 3 2 1 7 7 C 1.37879 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99944 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47123 * 184.83126 * 9 7 2 11 11 C 1.47090 * 111.00018 * 301.72515 * 10 9 7 12 12 C 1.51386 * 109.01508 * 187.77798 * 11 10 9 13 13 C 1.53104 * 111.10800 * 299.69587 * 12 11 10 14 14 H 1.09005 * 112.41888 * 285.46388 * 13 12 11 15 15 C 1.55823 * 107.43881 * 160.85889 * 13 12 11 16 16 C 1.54436 * 102.80685 * 281.19463 * 15 13 12 17 17 N 1.47754 * 107.13965 * 337.23926 * 16 15 13 18 18 C 1.47037 * 107.97195 * 358.76954 * 17 16 15 19 19 H 1.09002 * 108.23165 * 268.76598 * 18 17 16 20 20 C 1.46704 * 110.99713 * 64.55205 * 10 9 7 21 21 H 0.97009 * 119.99454 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47396 * 64.83740 * 9 7 2 23 23 H 1.08999 * 109.47290 * 304.83412 * 9 7 2 24 24 H 1.09000 * 109.59630 * 307.95000 * 11 10 9 25 25 H 1.08996 * 109.59505 * 68.39606 * 11 10 9 26 26 H 1.08999 * 109.64422 * 178.74081 * 12 11 10 27 27 H 1.09002 * 108.10613 * 59.64914 * 12 11 10 28 28 H 1.08998 * 110.74098 * 39.52673 * 15 13 12 29 29 H 1.09002 * 110.73985 * 162.68456 * 15 13 12 30 30 H 1.08996 * 109.90296 * 96.61334 * 16 15 13 31 31 H 1.09001 * 109.90653 * 217.67806 * 16 15 13 32 32 H 1.00900 * 111.00531 * 236.89548 * 17 16 15 33 33 H 1.08999 * 109.13111 * 296.04583 * 20 10 9 34 34 H 1.08999 * 109.13468 * 55.21565 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2011 -3.6134 0.1155 11 6 3.1750 -3.5925 -0.9866 12 6 4.0061 -4.8568 -0.9344 13 6 4.7676 -4.9618 0.3896 14 1 5.6173 -4.2804 0.4356 15 6 5.1806 -6.4529 0.5739 16 6 3.8743 -7.1112 1.0692 17 7 3.0455 -6.0416 1.6625 18 6 3.7995 -4.7823 1.5754 19 1 4.3785 -4.6673 2.4918 20 6 2.8982 -3.5776 1.4058 21 1 -0.4850 0.8402 0.0004 22 1 0.6903 -2.5952 -0.9305 23 1 0.5611 -2.5205 0.8432 24 1 2.6480 -3.5366 -1.9391 25 1 3.8311 -2.7290 -0.8783 26 1 4.7169 -4.8624 -1.7607 27 1 3.3332 -5.7088 -1.0319 28 1 5.4956 -6.8863 -0.3753 29 1 5.9699 -6.5455 1.3199 30 1 3.3474 -7.5669 0.2309 31 1 4.1015 -7.8680 1.8200 32 1 2.8092 -6.2560 2.6198 33 1 3.5001 -2.6706 1.4616 34 1 2.1619 -3.5675 2.2095 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885174325.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = -19.978446 kcal Electronic energy + Delta-G solvation = -14612.092794 eV Core-core repulsion = 12350.225016 eV Total energy + Delta-G solvation = -2261.867778 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.89334 -37.55907 -34.69502 -33.19143 -31.18213 -29.70598 -28.06194 -25.40339 -23.85583 -22.52417 -21.64581 -20.02898 -18.47126 -17.33960 -16.84495 -16.16019 -15.87754 -15.45376 -15.16517 -14.30479 -14.21021 -14.06169 -13.43924 -13.15910 -12.92348 -12.88748 -12.66680 -12.47345 -12.40410 -12.08600 -11.99537 -11.77006 -11.47318 -11.05183 -10.95302 -10.60785 -9.11644 -8.90917 -8.12720 -6.35561 1.35666 1.37736 1.46009 2.36807 3.08804 3.30936 3.44412 3.76774 3.78525 4.08546 4.32565 4.42589 4.54725 4.59408 4.67932 4.73591 4.86978 4.90959 4.99359 5.00897 5.05752 5.17135 5.24369 5.30882 5.36720 5.37326 5.56282 5.74916 6.06492 6.14534 6.33659 6.60125 6.72654 6.88206 7.36398 8.87535 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.055057 B = 0.008210 C = 0.007956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.438509 B = 3409.756594 C = 3518.583869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.558 4.558 8 H 0.057 0.943 9 C 0.199 3.801 10 N -0.521 5.521 11 C 0.063 3.937 12 C -0.094 4.094 13 C -0.095 4.095 14 H 0.088 0.912 15 C -0.128 4.128 16 C 0.051 3.949 17 N -0.682 5.682 18 C 0.092 3.908 19 H 0.051 0.949 20 C 0.082 3.918 21 H 0.265 0.735 22 H -0.001 1.001 23 H 0.001 0.999 24 H 0.050 0.950 25 H 0.016 0.984 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.341 0.659 33 H 0.018 0.982 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.633 -11.475 2.146 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.597 4.597 8 H 0.075 0.925 9 C 0.072 3.928 10 N -0.244 5.244 11 C -0.065 4.065 12 C -0.131 4.131 13 C -0.114 4.114 14 H 0.106 0.894 15 C -0.166 4.166 16 C -0.078 4.078 17 N -0.312 5.312 18 C -0.018 4.018 19 H 0.069 0.931 20 C -0.048 4.048 21 H 0.074 0.926 22 H 0.017 0.983 23 H 0.019 0.981 24 H 0.068 0.932 25 H 0.034 0.966 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.036 0.964 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.782 -11.727 1.547 16.005 hybrid contribution 0.810 1.907 0.738 2.199 sum 11.592 -9.820 2.285 15.363 Atomic orbital electron populations 1.70080 1.07689 1.27944 1.51050 1.25880 0.95651 1.03008 0.94490 0.85587 0.78406 0.78596 0.78979 1.19389 1.20588 1.19432 1.21988 0.93402 0.92977 1.51304 0.92454 1.19406 0.91497 0.87104 0.94791 1.62646 1.16461 1.43285 1.02002 1.21629 0.93668 0.96952 0.94285 1.21202 0.97718 0.97297 0.96914 1.22315 0.96802 0.97940 0.94356 0.89354 1.22980 0.97433 0.93604 1.02583 1.22639 0.92209 0.93459 0.99497 1.61366 1.44096 1.01625 1.24163 1.21626 0.92449 0.90117 0.97575 0.93131 1.21378 0.95862 0.95386 0.92132 0.92592 0.98324 0.98056 0.93178 0.96619 0.90523 0.91651 0.89548 0.90267 0.91773 0.91414 0.84257 0.96361 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 2 C 0.01 0.52 5.46 84.66 0.46 0.98 16 3 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.56 -32.05 7.71 25.60 0.20 -31.86 16 8 H 0.06 3.22 5.78 -2.91 -0.02 3.20 16 9 C 0.20 11.15 5.14 85.56 0.44 11.59 16 10 N -0.52 -24.02 4.94 -907.23 -4.48 -28.50 16 11 C 0.06 2.59 4.91 85.74 0.42 3.01 16 12 C -0.09 -2.89 5.05 30.10 0.15 -2.73 16 13 C -0.10 -2.57 3.67 -9.40 -0.03 -2.60 16 14 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 15 C -0.13 -2.55 6.33 32.06 0.20 -2.34 16 16 C 0.05 1.11 6.85 86.63 0.59 1.70 16 17 N -0.68 -19.34 7.05 -487.36 -3.43 -22.77 16 18 C 0.09 2.85 3.10 44.75 0.14 2.99 16 19 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 20 C 0.08 3.37 4.79 85.82 0.41 3.78 16 21 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 22 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 23 H 0.00 0.08 8.09 -2.39 -0.02 0.06 16 24 H 0.05 2.14 8.11 -2.39 -0.02 2.12 16 25 H 0.02 0.68 6.57 -2.39 -0.02 0.67 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.06 2.11 7.01 -2.39 -0.02 2.09 16 28 H 0.09 1.50 8.00 -2.39 -0.02 1.48 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.50 7.87 -2.39 -0.02 1.48 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.34 8.44 8.91 -89.69 -0.80 7.64 16 33 H 0.02 0.81 6.92 -2.39 -0.02 0.80 16 34 H 0.05 1.99 8.09 -2.39 -0.02 1.97 16 Total: -1.00 -65.18 261.64 -2.35 -67.53 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.27 Total: 9.14 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 2.98 Total: -15.49 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -7.63 Total: -107.93 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.18 -2.35 -67.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885174325.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.552 kcal (2) G-P(sol) polarization free energy of solvation -65.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds