Wall clock time and date at job start Mon Mar 30 2020 02:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99991 * 2 1 4 4 H 1.48504 * 109.47006 * 270.00461 * 3 2 1 5 5 H 1.48499 * 109.47012 * 30.00317 * 3 2 1 6 6 H 1.48495 * 109.47289 * 150.00360 * 3 2 1 7 7 C 1.37872 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00424 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00229 * 179.97438 * 7 2 1 10 10 N 1.46896 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.47658 * 111.00038 * 293.95144 * 10 9 7 12 12 C 1.52589 * 111.69987 * 178.52123 * 11 10 9 13 13 C 1.53862 * 111.26989 * 53.59920 * 12 11 10 14 14 C 1.51805 * 106.93740 * 304.67474 * 13 12 11 15 15 H 1.09004 * 110.00614 * 301.97864 * 14 13 12 16 16 N 1.46729 * 116.52509 * 175.90588 * 14 13 12 17 17 C 1.49066 * 104.32437 * 199.72319 * 16 14 13 18 18 C 1.54987 * 106.82947 * 25.80198 * 17 16 14 19 19 C 1.44565 * 110.85942 * 171.75825 * 10 9 7 20 20 H 1.08996 * 109.37463 * 68.52619 * 19 10 9 21 21 H 0.96997 * 120.00226 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46934 * 59.99384 * 9 7 2 23 23 H 1.09003 * 109.46802 * 299.99735 * 9 7 2 24 24 H 1.08995 * 109.03253 * 57.95357 * 11 10 9 25 25 H 1.08999 * 108.97616 * 299.04864 * 11 10 9 26 26 H 1.08997 * 109.12199 * 293.13374 * 12 11 10 27 27 H 1.09001 * 109.12168 * 174.05901 * 12 11 10 28 28 H 1.09001 * 109.96099 * 185.32101 * 13 12 11 29 29 H 1.09001 * 110.03438 * 64.07338 * 13 12 11 30 30 H 1.00909 * 110.99435 * 319.34106 * 16 14 13 31 31 H 1.09000 * 109.98664 * 266.45541 * 17 16 14 32 32 H 1.08998 * 110.02321 * 145.16435 * 17 16 14 33 33 H 1.09002 * 110.52698 * 120.94302 * 18 17 16 34 34 H 1.09005 * 110.52566 * 243.55421 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 3.6505 -3.2642 1.2591 12 6 4.1202 -4.7160 1.2616 13 6 5.6213 -4.8175 0.9396 14 6 5.8384 -4.1090 -0.3852 15 1 5.2211 -4.5665 -1.1584 16 7 7.2258 -3.9991 -0.8499 17 6 7.1951 -2.8882 -1.8434 18 6 5.9995 -1.9785 -1.4625 19 6 5.4332 -2.6188 -0.1952 20 1 5.9289 -2.2070 0.6838 21 1 -0.4850 0.8400 0.0004 22 1 3.8753 -0.6804 0.8888 23 1 3.8746 -0.6801 -0.8912 24 1 2.5683 -3.2405 1.3873 25 1 4.1185 -2.7378 2.0909 26 1 3.5562 -5.2750 0.5148 27 1 3.9358 -5.1493 2.2446 28 1 5.9136 -5.8641 0.8541 29 1 6.2046 -4.3313 1.7216 30 1 7.8473 -3.7831 -0.0849 31 1 7.0532 -3.2895 -2.8468 32 1 8.1245 -2.3206 -1.7974 33 1 6.3411 -0.9638 -1.2582 34 1 5.2525 -1.9767 -2.2564 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885372066.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:57 Heat of formation + Delta-G solvation = -18.554851 kcal Electronic energy + Delta-G solvation = -14617.015624 eV Core-core repulsion = 12355.209578 eV Total energy + Delta-G solvation = -2261.806046 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.15927 -37.24300 -35.19339 -34.10756 -30.55504 -29.72635 -28.97213 -25.24960 -23.42756 -22.67033 -21.57472 -20.68495 -18.99222 -17.16600 -16.59670 -16.48251 -15.65796 -15.57748 -15.40689 -14.74058 -14.61071 -14.39060 -14.04755 -13.42442 -13.09874 -12.79228 -12.65578 -12.47229 -12.07357 -11.95419 -11.92340 -11.72685 -11.62433 -11.37328 -11.05750 -10.81694 -9.62467 -9.08742 -8.32460 -6.35897 1.29641 1.30833 1.41390 2.29647 2.94740 3.01457 3.27296 3.74998 3.88796 3.98917 4.09716 4.24167 4.29394 4.36715 4.39440 4.60206 4.70986 4.79430 4.81137 4.94120 5.00268 5.02174 5.09815 5.10833 5.19256 5.30259 5.39828 5.50889 5.68845 5.98877 6.31851 6.46758 6.66429 6.70477 7.27732 8.84091 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.038105 B = 0.010022 C = 0.008427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.632395 B = 2793.065008 C = 3322.014734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.517 4.517 8 H 0.039 0.961 9 C 0.173 3.827 10 N -0.524 5.524 11 C 0.062 3.938 12 C -0.107 4.107 13 C -0.102 4.102 14 C 0.082 3.918 15 H 0.076 0.924 16 N -0.658 5.658 17 C 0.052 3.948 18 C -0.146 4.146 19 C 0.036 3.964 20 H 0.025 0.975 21 H 0.268 0.732 22 H -0.021 1.021 23 H 0.028 0.972 24 H 0.054 0.946 25 H 0.018 0.982 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.342 0.658 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.739 -5.929 0.845 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.555 4.555 8 H 0.057 0.943 9 C 0.046 3.954 10 N -0.248 5.248 11 C -0.065 4.065 12 C -0.146 4.146 13 C -0.140 4.140 14 C -0.030 4.030 15 H 0.094 0.906 16 N -0.285 5.285 17 C -0.078 4.078 18 C -0.185 4.185 19 C -0.075 4.075 20 H 0.043 0.957 21 H 0.076 0.924 22 H -0.003 1.003 23 H 0.046 0.954 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.158 0.842 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.386 -6.669 -0.035 16.769 hybrid contribution -0.354 2.328 1.198 2.642 sum 15.032 -4.340 1.163 15.689 Atomic orbital electron populations 1.70044 1.08011 1.28138 1.52447 1.25832 0.95618 1.03039 0.94353 0.85738 0.79178 0.78841 0.79337 1.18822 1.20421 1.18037 1.21250 0.90991 0.93308 1.49971 0.94311 1.19915 0.94336 0.86652 0.94517 1.61738 1.11258 1.16612 1.35182 1.22020 1.00301 0.95204 0.89009 1.21556 0.96049 0.94179 1.02785 1.21460 0.95731 1.01722 0.95060 1.22329 0.89952 0.93092 0.97577 0.90571 1.62995 1.06282 1.42040 1.17172 1.23087 0.97084 0.90238 0.97345 1.22558 0.99041 0.99647 0.97261 1.22848 0.88812 0.98992 0.96861 0.95724 0.92351 1.00299 0.95427 0.92726 0.96405 0.91895 0.89274 0.89109 0.91326 0.84205 0.89994 0.89160 0.91423 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 2 C 0.01 0.54 5.47 84.65 0.46 1.00 16 3 Si 0.95 44.77 27.47 68.60 1.88 46.66 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.50 6.54 99.48 0.65 -10.85 16 7 C -0.52 -30.57 9.04 25.60 0.23 -30.34 16 8 H 0.04 2.55 7.35 -2.91 -0.02 2.53 16 9 C 0.17 8.58 3.66 85.56 0.31 8.89 16 10 N -0.52 -22.31 4.67 -874.98 -4.09 -26.40 16 11 C 0.06 2.43 5.19 86.02 0.45 2.87 16 12 C -0.11 -3.09 5.99 30.75 0.18 -2.91 16 13 C -0.10 -2.48 5.93 30.49 0.18 -2.30 16 14 C 0.08 2.30 2.84 45.45 0.13 2.43 16 15 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 16 N -0.66 -15.49 7.46 -480.56 -3.59 -19.08 16 17 C 0.05 1.20 7.56 86.56 0.65 1.85 16 18 C -0.15 -4.41 5.66 31.23 0.18 -4.23 16 19 C 0.04 1.23 2.06 46.20 0.10 1.33 16 20 H 0.02 0.85 8.04 -2.39 -0.02 0.83 16 21 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 22 H -0.02 -1.04 7.18 -2.39 -0.02 -1.05 16 23 H 0.03 1.35 6.57 -2.39 -0.02 1.34 16 24 H 0.05 2.48 6.79 -2.39 -0.02 2.46 16 25 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 30 H 0.34 6.82 8.83 -89.69 -0.79 6.03 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 2.14 8.09 -2.38 -0.02 2.12 16 Total: -1.00 -66.42 262.12 -2.40 -68.82 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.22 Total: 10.84 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 2.87 Total: -21.40 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -7.38 Total: -104.92 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -66.42 -2.40 -68.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372066.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.261 kcal (2) G-P(sol) polarization free energy of solvation -66.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds