Wall clock time and date at job start Mon Mar 30 2020 02:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99870 * 2 1 4 4 H 1.48507 * 109.46885 * 239.99728 * 3 2 1 5 5 H 1.48501 * 109.47417 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47045 * 120.00144 * 3 2 1 7 7 C 1.38807 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99838 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00624 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64206 * 359.97438 * 9 7 2 11 11 C 1.54321 * 107.26791 * 181.07813 * 10 9 7 12 12 C 1.55448 * 102.96961 * 22.19024 * 11 10 9 13 13 H 1.09004 * 111.00873 * 82.52495 * 12 11 10 14 14 C 1.53000 * 111.11787 * 206.45980 * 12 11 10 15 15 H 1.09006 * 109.90222 * 52.46054 * 14 12 11 16 16 C 1.53988 * 109.91638 * 173.55442 * 14 12 11 17 17 C 1.54599 * 105.13894 * 120.58019 * 16 14 12 18 18 C 1.54939 * 102.92209 * 21.95962 * 17 16 14 19 19 N 1.47896 * 109.92292 * 291.14910 * 14 12 11 20 20 C 1.47419 * 125.65218 * 179.97438 * 9 7 2 21 21 H 0.96995 * 120.00037 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.88266 * 300.49188 * 10 9 7 23 23 H 1.08997 * 109.88244 * 61.50546 * 10 9 7 24 24 H 1.08998 * 110.71927 * 140.55469 * 11 10 9 25 25 H 1.08998 * 110.72073 * 263.64892 * 11 10 9 26 26 H 1.09000 * 110.31241 * 239.49590 * 16 14 12 27 27 H 1.09007 * 110.31260 * 1.57306 * 16 14 12 28 28 H 1.08997 * 110.72747 * 140.31512 * 17 16 14 29 29 H 1.09002 * 110.72861 * 263.60379 * 17 16 14 30 30 H 1.09005 * 110.66778 * 81.01424 * 18 17 16 31 31 H 1.08993 * 110.67169 * 203.98300 * 18 17 16 32 32 H 1.00909 * 111.00162 * 335.83266 * 19 14 12 33 33 H 1.09002 * 110.36926 * 274.69267 * 20 9 7 34 34 H 1.08995 * 110.36556 * 36.90551 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1375 -2.5328 0.0028 11 6 -0.4484 -4.0441 0.0314 12 6 0.8546 -4.6573 0.6168 13 1 0.8608 -4.5957 1.7051 14 6 1.0417 -6.1024 0.1504 15 1 0.9701 -6.1538 -0.9361 16 6 2.4135 -6.6288 0.6111 17 6 2.0983 -7.8566 1.4961 18 6 0.6824 -8.2707 1.0225 19 7 0.0146 -6.9685 0.7687 20 6 1.9335 -3.7312 0.0017 21 1 -0.4850 0.8400 -0.0004 22 1 -0.5569 -2.0513 0.8862 23 1 -0.5552 -2.0830 -0.8979 24 1 -1.2979 -4.2507 0.6823 25 1 -0.6355 -4.4185 -0.9750 26 1 3.0129 -6.9265 -0.2492 27 1 2.9359 -5.8673 1.1903 28 1 2.8152 -8.6573 1.3144 29 1 2.0867 -7.5796 2.5502 30 1 0.7397 -8.8586 0.1064 31 1 0.1629 -8.8267 1.8030 32 1 -0.3295 -6.5651 1.6273 33 1 2.1653 -4.0428 -1.0167 34 1 2.8347 -3.7395 0.6146 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885372069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:11 Heat of formation + Delta-G solvation = 18.605692 kcal Electronic energy + Delta-G solvation = -14312.223545 eV Core-core repulsion = 12052.028901 eV Total energy + Delta-G solvation = -2260.194644 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.05728 -36.57704 -32.64538 -30.13121 -29.84838 -28.56392 -26.19217 -24.24043 -21.58613 -20.94235 -19.85111 -19.27577 -16.88370 -15.92202 -15.28251 -14.57725 -14.46489 -13.69322 -13.65452 -13.31560 -12.33826 -12.09916 -11.95206 -11.72477 -11.30979 -11.25039 -11.05796 -10.82675 -10.78450 -10.44946 -10.13768 -10.04211 -9.72869 -9.63920 -9.53685 -8.53914 -8.46984 -6.76135 -5.65352 -2.98756 3.43414 3.47219 3.48912 4.30269 4.54903 4.83664 4.88277 5.12717 5.25256 5.45479 5.52022 5.58000 5.63830 5.69747 5.83507 5.94457 6.00097 6.09028 6.10440 6.19633 6.37383 6.48683 6.61162 6.72373 6.81389 6.97714 7.04373 7.50124 7.62397 7.73540 7.90100 8.33087 9.28371 9.88945 10.56154 11.46226 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.068565 B = 0.007156 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.271348 B = 3911.977256 C = 4212.175742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.607 5.607 10 C 0.175 3.825 11 C -0.131 4.131 12 C -0.106 4.106 13 H 0.069 0.931 14 C 0.086 3.914 15 H 0.083 0.917 16 C -0.149 4.149 17 C -0.158 4.158 18 C 0.041 3.959 19 N -0.669 5.669 20 C 0.146 3.854 21 H 0.252 0.748 22 H 0.043 0.957 23 H 0.041 0.959 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.337 0.663 33 H 0.018 0.982 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 -13.824 2.349 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.169 4.169 12 C -0.126 4.126 13 H 0.088 0.912 14 C -0.024 4.024 15 H 0.101 0.899 16 C -0.188 4.188 17 C -0.197 4.197 18 C -0.089 4.089 19 N -0.297 5.297 20 C 0.019 3.981 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.035 0.965 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.367 -13.760 1.722 13.935 hybrid contribution 1.125 1.123 0.773 1.768 sum 2.492 -12.637 2.496 13.119 Atomic orbital electron populations 1.69975 1.04871 1.25037 1.57139 1.24805 0.95716 0.97634 1.02406 0.86203 0.78438 0.83285 0.77858 1.21192 1.21589 1.21237 1.19022 0.90377 0.82555 1.43721 0.90610 1.44490 1.01854 0.99859 1.87120 1.21165 0.84172 0.88775 1.00827 1.22868 0.95758 0.98636 0.99632 1.22646 0.98088 0.92372 0.99476 0.91216 1.22349 0.88444 0.91887 0.99722 0.89901 1.22897 0.98786 0.97399 0.99722 1.23119 0.98638 0.98212 0.99765 1.23095 0.92292 0.93081 1.00401 1.62834 1.33439 1.03300 1.30093 1.21479 0.93991 0.86016 0.96605 0.93767 0.93881 0.94127 0.92409 0.92427 0.91537 0.90885 0.91382 0.91771 0.90572 0.91230 0.84702 0.96481 0.94739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.88 10.31 55.49 0.57 -27.31 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.57 10.28 -15.06 -0.15 -6.72 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.61 -16.09 3.39 -170.07 -0.58 -16.67 16 10 C 0.18 4.44 5.38 -3.06 -0.02 4.42 16 11 C -0.13 -2.56 6.33 -24.74 -0.16 -2.72 16 12 C -0.11 -1.88 2.28 -88.31 -0.20 -2.08 16 13 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 14 C 0.09 1.27 2.91 -66.65 -0.19 1.07 16 15 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 16 C -0.15 -1.92 6.18 -25.38 -0.16 -2.07 16 17 C -0.16 -1.70 7.06 -24.87 -0.18 -1.88 16 18 C 0.04 0.45 7.55 -1.90 -0.01 0.43 16 19 N -0.67 -8.95 7.29 -103.14 -0.75 -9.70 16 20 C 0.15 3.10 5.99 -2.53 -0.02 3.08 16 21 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.04 1.20 7.38 -51.93 -0.38 0.81 16 23 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.06 1.10 8.02 -51.93 -0.42 0.69 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.00 6.95 -51.93 -0.36 0.64 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.34 4.39 8.38 -39.29 -0.33 4.06 16 33 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 34 H 0.03 0.71 7.68 -51.93 -0.40 0.32 16 LS Contribution 266.44 15.07 4.02 4.02 Total: -1.00 -30.52 266.44 -8.57 -39.08 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.62 Total: -0.11 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -1.18 Total: -6.84 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.76 Total: -53.67 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.52 -8.57 -39.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.688 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds