Wall clock time and date at job start Mon Mar 30 2020 02:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99870 * 2 1 4 4 H 1.48507 * 109.46885 * 239.99728 * 3 2 1 5 5 H 1.48501 * 109.47417 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47045 * 120.00144 * 3 2 1 7 7 C 1.38807 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99838 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00624 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64206 * 359.97438 * 9 7 2 11 11 C 1.54321 * 107.26791 * 181.07813 * 10 9 7 12 12 C 1.55448 * 102.96961 * 22.19024 * 11 10 9 13 13 H 1.09004 * 111.00873 * 82.52495 * 12 11 10 14 14 C 1.53000 * 111.11787 * 206.45980 * 12 11 10 15 15 H 1.09006 * 109.90222 * 52.46054 * 14 12 11 16 16 C 1.53988 * 109.91638 * 173.55442 * 14 12 11 17 17 C 1.54599 * 105.13894 * 120.58019 * 16 14 12 18 18 C 1.54939 * 102.92209 * 21.95962 * 17 16 14 19 19 N 1.47896 * 109.92292 * 291.14910 * 14 12 11 20 20 C 1.47419 * 125.65218 * 179.97438 * 9 7 2 21 21 H 0.96995 * 120.00037 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.88266 * 300.49188 * 10 9 7 23 23 H 1.08997 * 109.88244 * 61.50546 * 10 9 7 24 24 H 1.08998 * 110.71927 * 140.55469 * 11 10 9 25 25 H 1.08998 * 110.72073 * 263.64892 * 11 10 9 26 26 H 1.09000 * 110.31241 * 239.49590 * 16 14 12 27 27 H 1.09007 * 110.31260 * 1.57306 * 16 14 12 28 28 H 1.08997 * 110.72747 * 140.31512 * 17 16 14 29 29 H 1.09002 * 110.72861 * 263.60379 * 17 16 14 30 30 H 1.09005 * 110.66778 * 81.01424 * 18 17 16 31 31 H 1.08993 * 110.67169 * 203.98300 * 18 17 16 32 32 H 1.00909 * 111.00162 * 335.83266 * 19 14 12 33 33 H 1.09002 * 110.36926 * 274.69267 * 20 9 7 34 34 H 1.08995 * 110.36556 * 36.90551 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1375 -2.5328 0.0028 11 6 -0.4484 -4.0441 0.0314 12 6 0.8546 -4.6573 0.6168 13 1 0.8608 -4.5957 1.7051 14 6 1.0417 -6.1024 0.1504 15 1 0.9701 -6.1538 -0.9361 16 6 2.4135 -6.6288 0.6111 17 6 2.0983 -7.8566 1.4961 18 6 0.6824 -8.2707 1.0225 19 7 0.0146 -6.9685 0.7687 20 6 1.9335 -3.7312 0.0017 21 1 -0.4850 0.8400 -0.0004 22 1 -0.5569 -2.0513 0.8862 23 1 -0.5552 -2.0830 -0.8979 24 1 -1.2979 -4.2507 0.6823 25 1 -0.6355 -4.4185 -0.9750 26 1 3.0129 -6.9265 -0.2492 27 1 2.9359 -5.8673 1.1903 28 1 2.8152 -8.6573 1.3144 29 1 2.0867 -7.5796 2.5502 30 1 0.7397 -8.8586 0.1064 31 1 0.1629 -8.8267 1.8030 32 1 -0.3295 -6.5651 1.6273 33 1 2.1653 -4.0428 -1.0167 34 1 2.8347 -3.7395 0.6146 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885372069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:10 Heat of formation + Delta-G solvation = -2.196504 kcal Electronic energy + Delta-G solvation = -14313.125595 eV Core-core repulsion = 12052.028901 eV Total energy + Delta-G solvation = -2261.096695 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.32862 -38.17322 -34.59699 -31.82676 -30.96985 -30.19864 -27.76443 -26.15404 -22.62272 -22.41463 -21.62405 -20.60394 -18.91465 -17.24329 -16.59706 -16.43183 -15.90660 -15.30056 -14.96549 -14.54655 -14.06235 -13.87462 -13.47385 -13.20281 -12.89094 -12.73967 -12.62943 -12.35189 -12.06305 -11.94858 -11.83960 -11.66285 -11.53603 -11.31990 -11.10791 -10.70631 -9.49968 -8.90488 -7.85452 -5.21835 1.44259 1.48425 1.54850 2.49014 3.26096 3.32432 3.60482 3.86150 3.90594 4.04231 4.17536 4.24395 4.25835 4.53304 4.64423 4.69371 4.72540 4.87385 4.92586 5.03053 5.06834 5.09333 5.17986 5.21839 5.37097 5.43733 5.49300 5.67763 5.77242 5.94268 6.19477 6.49647 7.09396 7.77367 8.42799 9.25030 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.068565 B = 0.007156 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.271348 B = 3911.977256 C = 4212.175742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.982 3.018 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.083 0.917 9 N -0.630 5.630 10 C 0.183 3.817 11 C -0.115 4.115 12 C -0.086 4.086 13 H 0.070 0.930 14 C 0.095 3.905 15 H 0.074 0.926 16 C -0.149 4.149 17 C -0.151 4.151 18 C 0.042 3.958 19 N -0.678 5.678 20 C 0.142 3.858 21 H 0.247 0.753 22 H 0.008 0.992 23 H 0.002 0.998 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.339 0.661 33 H 0.021 0.979 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -15.504 2.803 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.810 3.190 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.376 4.376 8 H 0.100 0.900 9 N -0.357 5.357 10 C 0.058 3.942 11 C -0.154 4.154 12 C -0.106 4.106 13 H 0.088 0.912 14 C -0.016 4.016 15 H 0.093 0.907 16 C -0.189 4.189 17 C -0.190 4.190 18 C -0.087 4.087 19 N -0.306 5.306 20 C 0.016 3.984 21 H 0.056 0.944 22 H 0.026 0.974 23 H 0.020 0.980 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.156 0.844 33 H 0.039 0.961 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.357 -15.484 2.179 15.813 hybrid contribution 0.832 1.612 0.618 1.917 sum 3.189 -13.871 2.798 14.505 Atomic orbital electron populations 1.70214 1.06441 1.25383 1.58251 1.25723 0.96659 1.01247 1.02556 0.85104 0.77113 0.78509 0.78321 1.20189 1.21930 1.20110 1.19472 0.91052 0.83870 1.43191 0.89954 1.44837 1.02554 1.01279 1.87013 1.20932 0.83764 0.92214 0.97308 1.22702 0.97484 0.94416 1.00757 1.22496 0.95215 0.93777 0.99116 0.91155 1.22169 0.90210 0.89888 0.99288 0.90745 1.22879 0.97489 0.98124 1.00368 1.23082 0.98939 0.97589 0.99359 1.23186 0.92287 0.91912 1.01339 1.62824 1.33266 1.04030 1.30449 1.21659 0.95132 0.84417 0.97156 0.94392 0.97358 0.98002 0.90549 0.91739 0.90765 0.91919 0.89583 0.91507 0.90144 0.89306 0.84437 0.96071 0.94134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.59 10.31 21.65 0.22 -59.37 16 2 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 3 Si 0.98 46.88 29.55 68.60 2.03 48.90 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.25 -14.40 10.28 84.03 0.86 -13.53 16 8 H 0.08 4.55 7.83 -2.91 -0.02 4.52 16 9 N -0.63 -34.00 3.39 -691.98 -2.35 -36.35 16 10 C 0.18 9.57 5.38 86.73 0.47 10.03 16 11 C -0.12 -4.48 6.33 31.88 0.20 -4.27 16 12 C -0.09 -2.96 2.28 -9.29 -0.02 -2.98 16 13 H 0.07 2.43 8.10 -2.38 -0.02 2.41 16 14 C 0.09 2.58 2.91 45.06 0.13 2.71 16 15 H 0.07 2.19 8.11 -2.38 -0.02 2.17 16 16 C -0.15 -3.46 6.18 31.47 0.19 -3.26 16 17 C -0.15 -2.72 7.06 31.80 0.22 -2.50 16 18 C 0.04 0.77 7.55 86.65 0.65 1.42 16 19 N -0.68 -16.25 7.29 -480.22 -3.50 -19.75 16 20 C 0.14 5.96 5.99 86.86 0.52 6.48 16 21 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 22 H 0.01 0.48 7.38 -2.39 -0.02 0.46 16 23 H 0.00 0.10 7.50 -2.39 -0.02 0.08 16 24 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.06 2.42 8.02 -2.39 -0.02 2.40 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.59 6.95 -2.38 -0.02 1.57 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.34 7.91 8.38 -89.69 -0.75 7.16 16 33 H 0.02 0.89 8.04 -2.39 -0.02 0.87 16 34 H 0.04 1.64 7.68 -2.39 -0.02 1.63 16 Total: -1.00 -66.77 266.44 0.41 -66.36 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.31 Total: 9.72 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 3.70 Total: -9.51 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -5.63 Total: -115.47 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Total: -66.77 0.41 -66.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.166 kcal (2) G-P(sol) polarization free energy of solvation -66.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds