Wall clock time and date at job start Mon Mar 30 2020 02:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99842 * 2 1 4 4 H 1.48498 * 109.46847 * 239.99746 * 3 2 1 5 5 H 1.48495 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47144 * 120.00007 * 3 2 1 7 7 C 1.38814 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00349 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64904 * 0.03444 * 9 7 2 11 11 C 1.54905 * 104.83208 * 204.09330 * 10 9 7 12 12 C 1.55158 * 101.58287 * 322.99333 * 11 10 9 13 13 H 1.08997 * 110.87221 * 277.06686 * 12 11 10 14 14 C 1.53001 * 110.71538 * 153.86301 * 12 11 10 15 15 H 1.09002 * 109.88229 * 305.72581 * 14 12 11 16 16 C 1.54316 * 110.01962 * 184.60868 * 14 12 11 17 17 C 1.55148 * 103.01797 * 218.23597 * 16 14 12 18 18 C 1.54901 * 101.65256 * 35.65556 * 17 16 14 19 19 N 1.47443 * 109.88892 * 66.75737 * 14 12 11 20 20 C 1.47017 * 125.64628 * 180.02562 * 9 7 2 21 21 H 0.97001 * 119.99863 * 0.02562 * 1 2 3 22 22 H 1.08998 * 110.36984 * 322.93799 * 10 9 7 23 23 H 1.09010 * 110.36122 * 85.14630 * 10 9 7 24 24 H 1.09001 * 111.00175 * 204.91645 * 11 10 9 25 25 H 1.09007 * 111.00181 * 81.07026 * 11 10 9 26 26 H 1.09001 * 110.70769 * 336.61701 * 16 14 12 27 27 H 1.08996 * 110.71147 * 99.85396 * 16 14 12 28 28 H 1.09001 * 110.98880 * 277.55964 * 17 16 14 29 29 H 1.09003 * 110.99159 * 153.74544 * 17 16 14 30 30 H 1.09006 * 110.37195 * 204.10431 * 18 17 16 31 31 H 1.08998 * 110.47204 * 81.80862 * 18 17 16 32 32 H 1.00899 * 111.00371 * 356.31109 * 19 14 12 33 33 H 1.09000 * 109.88290 * 59.55525 * 20 9 7 34 34 H 1.09007 * 110.00935 * 298.46221 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 -0.0007 11 6 -0.4021 -3.9323 0.6111 12 6 0.7785 -4.7524 0.0272 13 1 0.5490 -5.1005 -0.9799 14 6 1.1224 -5.9312 0.9400 15 1 1.3082 -5.5737 1.9529 16 6 2.3693 -6.6668 0.4059 17 6 2.0374 -8.1582 0.6754 18 6 0.5100 -8.1900 0.4196 19 7 0.0121 -6.9013 0.9463 20 6 1.9319 -3.7275 0.0016 21 1 -0.4850 0.8401 -0.0004 22 1 -0.5998 -1.7588 0.6143 23 1 -0.5265 -2.4850 -1.0194 24 1 -1.3592 -4.3327 0.2768 25 1 -0.3535 -3.8979 1.6995 26 1 2.4951 -6.4869 -0.6618 27 1 3.2603 -6.3647 0.9562 28 1 2.2666 -8.4291 1.7061 29 1 2.5640 -8.8079 -0.0237 30 1 0.0526 -9.0213 0.9562 31 1 0.3038 -8.2689 -0.6477 32 1 -0.7661 -6.5639 0.3998 33 1 2.5572 -3.8506 0.8858 34 1 2.5311 -3.8664 -0.8983 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885372071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:13 Heat of formation + Delta-G solvation = -1.297705 kcal Electronic energy + Delta-G solvation = -14330.054852 eV Core-core repulsion = 12068.997133 eV Total energy + Delta-G solvation = -2261.057720 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.36289 -38.11227 -34.60950 -31.88287 -31.12452 -30.22447 -27.81735 -26.17036 -22.43003 -22.42492 -21.43084 -20.84501 -18.90138 -17.42210 -16.72136 -16.65729 -15.95949 -15.51739 -14.36283 -14.26526 -14.12548 -13.73635 -13.51246 -13.16366 -13.04754 -12.83347 -12.70320 -12.50543 -12.05871 -11.99751 -11.84626 -11.77004 -11.58080 -11.41480 -11.08016 -10.74464 -9.31353 -8.89995 -7.78425 -5.23511 1.45101 1.49009 1.55538 2.48890 3.28278 3.30744 3.65414 3.79748 3.83562 3.92115 4.10791 4.22404 4.31339 4.50699 4.60780 4.69530 4.70419 4.84596 4.94026 4.99305 5.04041 5.10608 5.17947 5.20729 5.35516 5.41965 5.49915 5.64777 5.80786 6.02314 6.30039 6.48358 7.09602 7.77581 8.42116 9.23460 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.070781 B = 0.007167 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.492573 B = 3906.024089 C = 4208.102820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.983 3.017 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.119 4.119 12 C -0.097 4.097 13 H 0.073 0.927 14 C 0.097 3.903 15 H 0.067 0.933 16 C -0.139 4.139 17 C -0.123 4.123 18 C 0.041 3.959 19 N -0.687 5.687 20 C 0.143 3.857 21 H 0.248 0.752 22 H 0.070 0.930 23 H -0.016 1.016 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.342 0.658 33 H 0.026 0.974 34 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 -15.096 0.469 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.811 3.189 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.158 4.158 12 C -0.117 4.117 13 H 0.092 0.908 14 C -0.013 4.013 15 H 0.085 0.915 16 C -0.178 4.178 17 C -0.161 4.161 18 C -0.088 4.088 19 N -0.317 5.317 20 C 0.017 3.983 21 H 0.057 0.943 22 H 0.088 0.912 23 H 0.002 0.998 24 H 0.100 0.900 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.159 0.841 33 H 0.044 0.956 34 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.940 -15.077 1.160 15.245 hybrid contribution 0.352 1.498 -1.133 1.911 sum 2.291 -13.579 0.027 13.771 Atomic orbital electron populations 1.70069 1.06311 1.25155 1.58504 1.25691 0.96688 1.01151 1.02593 0.85083 0.77113 0.78478 0.78242 1.20384 1.21753 1.20144 1.19460 0.91051 0.83941 1.42852 0.90211 1.44859 1.02836 1.01053 1.86780 1.21728 0.84108 0.95206 0.96261 1.22833 0.97832 0.95421 0.99678 1.22572 0.95462 0.94787 0.98919 0.90827 1.22118 0.90963 0.90496 0.97686 0.91480 1.22858 0.97671 0.95918 1.01315 1.22695 0.95340 0.95431 1.02618 1.22941 0.95214 0.92315 0.98290 1.62069 1.08531 1.03534 1.57553 1.21370 0.94840 0.84602 0.97466 0.94286 0.91169 0.99783 0.89955 0.92249 0.91409 0.90748 0.90683 0.89262 0.89545 0.93423 0.84092 0.95638 0.96409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.31 10.09 21.65 0.22 -58.09 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 3 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.24 -14.22 10.27 84.03 0.86 -13.35 16 8 H 0.08 4.43 7.83 -2.92 -0.02 4.41 16 9 N -0.63 -33.94 3.39 -692.00 -2.35 -36.29 16 10 C 0.15 7.83 5.89 86.85 0.51 8.34 16 11 C -0.12 -4.59 6.04 31.98 0.19 -4.40 16 12 C -0.10 -3.35 2.21 -9.61 -0.02 -3.37 16 13 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 14 C 0.10 2.76 2.84 45.26 0.13 2.89 16 15 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 16 C -0.14 -3.31 5.91 31.78 0.19 -3.12 16 17 C -0.12 -2.31 7.08 31.98 0.23 -2.08 16 18 C 0.04 0.81 7.57 86.77 0.66 1.46 16 19 N -0.69 -17.16 7.30 -482.34 -3.52 -20.68 16 20 C 0.14 6.10 6.28 86.73 0.54 6.65 16 21 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 22 H 0.07 4.12 5.87 -2.39 -0.01 4.10 16 23 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 24 H 0.08 2.72 7.97 -2.39 -0.02 2.70 16 25 H 0.06 2.34 8.04 -2.38 -0.02 2.32 16 26 H 0.07 1.63 7.86 -2.39 -0.02 1.61 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.34 8.32 7.69 -89.69 -0.69 7.63 16 33 H 0.03 1.08 7.82 -2.39 -0.02 1.06 16 34 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -65.51 265.87 0.51 -65.00 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.37 Total: 11.98 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 3.76 Total: -10.53 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -5.65 Total: -115.06 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -65.51 0.51 -65.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.703 kcal (2) G-P(sol) polarization free energy of solvation -65.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds