Wall clock time and date at job start Mon Mar 30 2020 02:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 119.99744 * 2 1 4 4 H 1.48497 * 109.47095 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47115 * 120.00053 * 3 2 1 6 6 H 1.48496 * 109.47139 * 239.99745 * 3 2 1 7 7 C 1.38808 * 119.99820 * 179.72359 * 2 1 3 8 8 H 1.08005 * 119.99702 * 208.57131 * 7 2 1 9 9 N 1.36933 * 120.00365 * 28.57549 * 7 2 1 10 10 C 1.47431 * 125.64811 * 19.28278 * 9 7 2 11 11 C 1.55122 * 104.72104 * 155.81923 * 10 9 7 12 12 C 1.55158 * 101.48762 * 37.29897 * 11 10 9 13 13 H 1.08997 * 110.72292 * 82.69279 * 12 11 10 14 14 C 1.53001 * 110.72014 * 205.96622 * 12 11 10 15 15 H 1.08998 * 109.88275 * 300.39905 * 14 12 11 16 16 C 1.54320 * 109.88737 * 179.19418 * 14 12 11 17 17 C 1.55135 * 103.02191 * 218.31267 * 16 14 12 18 18 C 1.54907 * 101.65390 * 35.65344 * 17 16 14 19 19 N 1.47448 * 109.88627 * 61.43063 * 14 12 11 20 20 C 1.47021 * 125.65074 * 199.60023 * 9 7 2 21 21 H 0.96997 * 119.99651 * 185.67638 * 1 2 3 22 22 H 1.09002 * 110.36646 * 274.75153 * 10 9 7 23 23 H 1.08999 * 110.36470 * 37.07433 * 10 9 7 24 24 H 1.09003 * 111.19556 * 279.18984 * 11 10 9 25 25 H 1.09001 * 110.93807 * 155.28926 * 11 10 9 26 26 H 1.08996 * 110.70633 * 336.69715 * 16 14 12 27 27 H 1.09010 * 110.70106 * 99.93037 * 16 14 12 28 28 H 1.09012 * 110.98921 * 277.56737 * 17 16 14 29 29 H 1.08994 * 110.99125 * 153.74893 * 17 16 14 30 30 H 1.08999 * 110.37745 * 204.09994 * 18 17 16 31 31 H 1.08999 * 110.46202 * 81.80440 * 18 17 16 32 32 H 1.00892 * 111.00103 * 356.14512 * 19 14 12 33 33 H 1.09007 * 109.87700 * 300.43407 * 20 9 7 34 34 H 1.08996 * 109.88710 * 61.59852 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6965 1.2125 6 1 3.1040 1.6964 -1.2124 7 6 2.0103 -1.2021 0.0058 8 1 2.9917 -1.2569 0.4534 9 7 1.4507 -2.3185 -0.5560 10 6 0.3438 -2.3276 -1.5298 11 6 0.5020 -3.6683 -2.2939 12 6 0.9639 -4.6188 -1.1578 13 1 0.1087 -4.9851 -0.5899 14 6 1.7786 -5.7834 -1.7241 15 1 1.1742 -6.3480 -2.4342 16 6 2.2448 -6.7047 -0.5772 17 6 3.6762 -7.1115 -1.0155 18 6 4.1758 -5.8130 -1.6968 19 7 2.9890 -5.2708 -2.3921 20 6 1.8499 -3.7069 -0.2831 21 1 -0.4849 -0.8359 0.0831 22 1 -0.6157 -2.2932 -1.0138 23 1 0.4363 -1.4866 -2.2171 24 1 1.2615 -3.5913 -3.0719 25 1 -0.4508 -3.9932 -2.7118 26 1 2.2707 -6.1612 0.3673 27 1 1.6012 -7.5812 -0.5012 28 1 3.6471 -7.9384 -1.7252 29 1 4.2927 -7.3615 -0.1521 30 1 4.9649 -6.0400 -2.4136 31 1 4.5346 -5.1047 -0.9500 32 1 3.0009 -4.2620 -2.3945 33 1 2.8988 -3.8490 -0.5435 34 1 1.6928 -3.9376 0.7705 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885372074.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:20 Heat of formation + Delta-G solvation = 17.549951 kcal Electronic energy + Delta-G solvation = -14618.276982 eV Core-core repulsion = 12358.036558 eV Total energy + Delta-G solvation = -2260.240424 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.42100 -36.48231 -32.84983 -30.12133 -29.90533 -28.70963 -26.35714 -24.18596 -21.62399 -21.08882 -20.01016 -18.76380 -17.48249 -16.50427 -15.60835 -14.53921 -14.29330 -13.71294 -13.31942 -13.00190 -12.69360 -12.57433 -12.20396 -11.72588 -11.59786 -11.32966 -11.05082 -10.86571 -10.67798 -10.49502 -10.13677 -10.07253 -9.98373 -9.86209 -9.49614 -8.37502 -8.18417 -6.89510 -6.09292 -3.14301 3.50318 3.54674 3.72480 4.45153 4.59797 4.80820 4.89921 5.01350 5.27957 5.30738 5.36719 5.46734 5.59150 5.67775 5.78370 5.85194 5.89227 6.00314 6.06610 6.14058 6.20357 6.31188 6.42627 6.55070 6.61563 6.81334 6.99924 7.10672 7.17294 7.62878 7.83887 8.51257 9.04521 9.83449 10.41144 11.23233 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048077 B = 0.008602 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.261352 B = 3254.295759 C = 3519.205505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.025 4.025 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.339 4.339 8 H 0.061 0.939 9 N -0.601 5.601 10 C 0.143 3.857 11 C -0.131 4.131 12 C -0.120 4.120 13 H 0.075 0.925 14 C 0.090 3.910 15 H 0.079 0.921 16 C -0.140 4.140 17 C -0.128 4.128 18 C 0.043 3.957 19 N -0.682 5.682 20 C 0.138 3.862 21 H 0.268 0.732 22 H 0.025 0.975 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.351 0.649 33 H 0.023 0.977 34 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.200 -11.971 -3.085 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.227 4.227 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.467 4.467 8 H 0.079 0.921 9 N -0.328 5.328 10 C 0.017 3.983 11 C -0.170 4.170 12 C -0.140 4.140 13 H 0.094 0.906 14 C -0.020 4.020 15 H 0.097 0.903 16 C -0.179 4.179 17 C -0.166 4.166 18 C -0.086 4.086 19 N -0.315 5.315 20 C 0.012 3.988 21 H 0.080 0.920 22 H 0.042 0.958 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.171 0.829 33 H 0.041 0.959 34 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 4.084 -10.680 -3.637 11.999 hybrid contribution 0.141 -1.168 1.096 1.608 sum 4.226 -11.847 -2.541 12.832 Atomic orbital electron populations 1.70783 1.06686 1.30167 1.47817 1.25775 0.96410 1.01151 0.99347 0.83534 0.74836 0.76054 0.76181 1.21054 1.22050 1.22058 1.19696 0.99725 0.88097 1.39175 0.92081 1.44569 1.40562 1.00308 1.47403 1.21578 0.91566 0.94242 0.90870 1.22906 1.00366 0.96667 0.97060 1.22682 0.98690 0.95050 0.97549 0.90638 1.22149 0.91738 0.94400 0.93691 0.90255 1.22886 0.96437 0.99437 0.99118 1.22665 0.96252 0.97750 0.99905 1.22818 0.93927 0.95427 0.96408 1.62115 1.01017 1.15335 1.53066 1.21373 0.95730 0.85949 0.95769 0.92046 0.95775 0.93323 0.91116 0.91984 0.90991 0.91251 0.91119 0.91326 0.90921 0.93892 0.82896 0.95905 0.96451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.16 13.02 55.49 0.72 -27.44 16 2 C -0.02 -0.72 5.09 -17.43 -0.09 -0.81 16 3 Si 1.06 25.80 30.00 -169.99 -5.10 20.70 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.34 -9.81 10.00 -15.06 -0.15 -9.96 16 8 H 0.06 1.77 7.97 -52.48 -0.42 1.35 16 9 N -0.60 -15.60 3.26 -169.93 -0.55 -16.15 16 10 C 0.14 3.41 5.39 -2.41 -0.01 3.39 16 11 C -0.13 -2.43 6.31 -24.47 -0.15 -2.59 16 12 C -0.12 -2.09 2.77 -88.78 -0.25 -2.34 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 14 C 0.09 1.34 3.29 -66.72 -0.22 1.12 16 15 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 16 C -0.14 -1.82 6.32 -24.91 -0.16 -1.98 16 17 C -0.13 -1.51 7.08 -24.60 -0.17 -1.68 16 18 C 0.04 0.59 7.11 -2.30 -0.02 0.57 16 19 N -0.68 -10.55 6.77 -103.81 -0.70 -11.25 16 20 C 0.14 2.94 5.41 -3.07 -0.02 2.92 16 21 H 0.27 8.32 6.18 -40.82 -0.25 8.06 16 22 H 0.02 0.62 6.81 -51.93 -0.35 0.26 16 23 H 0.05 1.26 8.07 -51.93 -0.42 0.84 16 24 H 0.07 1.29 6.79 -51.93 -0.35 0.94 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.02 7.06 -51.93 -0.37 0.65 16 27 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.04 0.62 7.36 -51.93 -0.38 0.24 16 32 H 0.35 6.14 5.67 -39.30 -0.22 5.92 16 33 H 0.02 0.49 5.18 -51.93 -0.27 0.22 16 34 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 LS Contribution 259.30 15.07 3.91 3.91 Total: -1.00 -30.73 259.30 -8.17 -38.90 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.21 Total: 2.69 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -1.24 Total: -11.36 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.53 Total: -54.84 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.10 Total: 20.70 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.73 -8.17 -38.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372074.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.453 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds