Wall clock time and date at job start Mon Mar 30 2020 02:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46338 * 111.00446 * 66.04651 * 10 9 7 12 12 C 1.53779 * 111.84521 * 178.39936 * 11 10 9 13 13 C 1.51956 * 106.98876 * 56.96883 * 12 11 10 14 14 H 1.08994 * 111.04890 * 59.49112 * 13 12 11 15 15 C 1.53545 * 115.65831 * 187.32517 * 13 12 11 16 16 C 1.55411 * 101.77140 * 153.34848 * 15 13 12 17 17 N 1.48712 * 106.97121 * 337.36161 * 16 15 13 18 18 C 1.45647 * 106.87802 * 354.75120 * 17 16 15 19 19 H 1.08998 * 109.11740 * 274.78264 * 18 17 16 20 20 C 1.47726 * 110.99948 * 298.79345 * 10 9 7 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09005 * 109.00549 * 299.01068 * 11 10 9 25 25 H 1.09007 * 109.00747 * 57.86113 * 11 10 9 26 26 H 1.09000 * 109.95315 * 176.33694 * 12 11 10 27 27 H 1.08998 * 109.95012 * 297.51627 * 12 11 10 28 28 H 1.08990 * 110.96888 * 271.47299 * 15 13 12 29 29 H 1.09004 * 110.96610 * 35.20001 * 15 13 12 30 30 H 1.09000 * 109.95781 * 96.73836 * 16 15 13 31 31 H 1.09002 * 109.96293 * 217.97771 * 16 15 13 32 32 H 1.00903 * 111.00034 * 115.92267 * 17 16 15 33 33 H 1.09009 * 109.91384 * 303.73488 * 20 10 9 34 34 H 1.09000 * 109.91550 * 64.90262 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 2.9672 -3.6533 1.2509 12 6 3.9454 -4.8392 1.2891 13 6 4.8490 -4.7089 0.0744 14 1 5.3951 -3.7658 0.0921 15 6 5.7946 -5.8913 -0.1808 16 6 6.0077 -5.8010 -1.7176 17 7 4.8476 -5.0550 -2.2735 18 6 3.9251 -4.8244 -1.1703 19 1 3.2815 -5.6965 -1.0549 20 6 3.0556 -3.5869 -1.2062 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 3.5302 -2.7253 1.3515 25 1 2.2734 -3.7396 2.0872 26 1 4.5409 -4.8010 2.2013 27 1 3.3935 -5.7781 1.2447 28 1 6.7363 -5.7597 0.3520 29 1 5.3222 -6.8347 0.0932 30 1 6.9324 -5.2661 -1.9342 31 1 6.0471 -6.8020 -2.1473 32 1 5.1427 -4.1829 -2.6864 33 1 2.4313 -3.5976 -2.0997 34 1 3.6804 -2.6937 -1.1994 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885372143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:26 Heat of formation + Delta-G solvation = -25.846893 kcal Electronic energy + Delta-G solvation = -14554.917996 eV Core-core repulsion = 12292.795744 eV Total energy + Delta-G solvation = -2262.122252 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.10458 -37.85913 -35.08524 -33.34518 -31.19766 -29.55500 -27.78179 -25.39995 -23.84051 -22.53791 -21.71900 -21.11733 -18.97989 -17.25892 -16.27277 -16.03917 -15.86329 -15.70097 -15.46102 -15.13387 -14.47437 -13.92236 -13.59985 -13.53193 -13.25000 -12.81076 -12.71383 -12.39437 -12.13556 -12.09784 -11.98867 -11.67772 -11.48310 -11.26957 -11.08401 -10.62263 -9.45946 -9.06003 -8.66411 -6.46771 1.46194 1.53474 1.73293 2.49838 2.87608 3.09016 3.34396 3.69024 3.75944 3.94550 4.13865 4.21833 4.36055 4.41928 4.47777 4.64194 4.74820 4.79512 4.82300 4.91122 4.97021 5.04080 5.08902 5.10205 5.16357 5.18133 5.42901 5.77374 5.82980 5.91112 6.32670 6.40090 6.44139 6.45611 7.35754 8.65306 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.043480 B = 0.008449 C = 0.008112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.826120 B = 3313.354343 C = 3450.776787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.030 4.030 3 Si 1.113 2.887 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.631 4.631 8 H 0.047 0.953 9 C 0.189 3.811 10 N -0.544 5.544 11 C 0.066 3.934 12 C -0.091 4.091 13 C -0.128 4.128 14 H 0.061 0.939 15 C -0.124 4.124 16 C 0.044 3.956 17 N -0.677 5.677 18 C 0.083 3.917 19 H 0.075 0.925 20 C 0.083 3.917 21 H 0.257 0.743 22 H 0.002 0.998 23 H -0.001 1.001 24 H 0.012 0.988 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.336 0.664 33 H 0.053 0.947 34 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.071 -10.040 0.025 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.229 4.229 3 Si 0.934 3.066 4 H -0.206 1.206 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.670 4.670 8 H 0.065 0.935 9 C 0.062 3.938 10 N -0.268 5.268 11 C -0.062 4.062 12 C -0.129 4.129 13 C -0.149 4.149 14 H 0.080 0.920 15 C -0.162 4.162 16 C -0.085 4.085 17 N -0.305 5.305 18 C -0.028 4.028 19 H 0.094 0.906 20 C -0.046 4.046 21 H 0.066 0.934 22 H 0.020 0.980 23 H 0.017 0.983 24 H 0.031 0.969 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.152 0.848 33 H 0.072 0.928 34 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 12.270 -9.433 -0.297 15.480 hybrid contribution 0.404 0.080 0.522 0.665 sum 12.674 -9.352 0.226 15.752 Atomic orbital electron populations 1.70918 1.07847 1.29963 1.48117 1.27276 0.96536 1.06539 0.92568 0.82984 0.74244 0.71554 0.77791 1.20588 1.19674 1.19674 1.22748 0.94417 0.94029 1.55781 0.93521 1.19504 0.91771 0.87975 0.94557 1.61555 1.18935 1.44252 1.02061 1.21884 0.95630 0.97200 0.91479 1.21411 0.95814 0.97588 0.98057 1.22627 0.96439 0.99198 0.96615 0.92009 1.22612 0.99664 0.97636 0.96311 1.23206 0.92187 0.99733 0.93329 1.62069 1.14558 1.25346 1.28520 1.21837 0.94120 0.97058 0.89746 0.90644 1.21520 0.94707 0.95599 0.92756 0.93370 0.98036 0.98253 0.96942 0.92490 0.89631 0.90639 0.89305 0.90241 0.91130 0.89637 0.84800 0.92838 0.96200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.65 21.45 0.29 -57.48 16 2 C -0.03 -1.75 5.46 84.65 0.46 -1.29 16 3 Si 1.11 50.50 29.90 68.60 2.05 52.56 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.63 -35.90 7.68 25.60 0.20 -35.71 16 8 H 0.05 2.64 6.05 -2.91 -0.02 2.62 16 9 C 0.19 10.19 4.41 85.56 0.38 10.56 16 10 N -0.54 -24.26 4.72 -901.80 -4.26 -28.52 16 11 C 0.07 2.62 5.19 86.67 0.45 3.07 16 12 C -0.09 -2.62 5.76 30.51 0.18 -2.45 16 13 C -0.13 -3.56 2.68 -10.11 -0.03 -3.59 16 14 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 15 C -0.12 -2.53 6.56 31.61 0.21 -2.32 16 16 C 0.04 0.91 7.62 86.78 0.66 1.57 16 17 N -0.68 -18.46 7.41 -484.11 -3.59 -22.04 16 18 C 0.08 2.66 2.79 45.43 0.13 2.78 16 19 H 0.08 2.58 7.94 -2.39 -0.02 2.56 16 20 C 0.08 3.37 5.00 85.59 0.43 3.80 16 21 H 0.26 16.14 7.22 -92.71 -0.67 15.48 16 22 H 0.00 0.09 7.96 -2.39 -0.02 0.07 16 23 H 0.00 -0.03 8.01 -2.38 -0.02 -0.05 16 24 H 0.01 0.54 6.83 -2.38 -0.02 0.53 16 25 H 0.06 2.27 8.10 -2.38 -0.02 2.25 16 26 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 2.09 8.01 -2.39 -0.02 2.07 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.54 8.13 -2.38 -0.02 1.52 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.34 8.91 8.76 -89.69 -0.79 8.12 16 33 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.02 0.88 6.75 -2.39 -0.02 0.86 16 Total: -1.00 -64.08 262.79 -2.06 -66.14 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.38 Total: 12.91 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 3.06 Total: -23.57 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -7.56 Total: -108.04 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.05 Total: 52.56 kcal Total: -64.08 -2.06 -66.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.295 kcal (2) G-P(sol) polarization free energy of solvation -64.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds