Wall clock time and date at job start Mon Mar 30 2020 02:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48504 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46892 * 299.99616 * 3 2 1 6 6 H 1.48495 * 109.47318 * 59.99251 * 3 2 1 7 7 C 1.37878 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99656 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99864 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47170 * 179.97438 * 9 7 2 11 11 C 1.46978 * 110.91787 * 292.85636 * 10 9 7 12 12 C 1.52752 * 108.70055 * 171.78723 * 11 10 9 13 13 C 1.53089 * 110.36351 * 61.05541 * 12 11 10 14 14 H 1.08995 * 112.96551 * 74.08059 * 13 12 11 15 15 C 1.55817 * 106.80165 * 198.57275 * 13 12 11 16 16 C 1.54448 * 102.81056 * 78.60266 * 15 13 12 17 17 N 1.47754 * 107.13631 * 22.75126 * 16 15 13 18 18 C 1.47031 * 107.97340 * 1.23260 * 17 16 15 19 19 H 1.08999 * 108.98728 * 90.71389 * 18 17 16 20 20 C 1.46704 * 111.00147 * 169.99741 * 10 9 7 21 21 H 0.97003 * 120.00049 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47602 * 59.99121 * 9 7 2 23 23 H 1.09004 * 109.46902 * 299.99022 * 9 7 2 24 24 H 1.09000 * 109.61307 * 52.01822 * 11 10 9 25 25 H 1.09004 * 109.73587 * 291.62617 * 11 10 9 26 26 H 1.09006 * 109.31857 * 300.77701 * 12 11 10 27 27 H 1.09000 * 109.32064 * 181.33383 * 12 11 10 28 28 H 1.09005 * 110.74072 * 320.27953 * 15 13 12 29 29 H 1.08993 * 110.90601 * 197.01040 * 15 13 12 30 30 H 1.08995 * 109.90486 * 263.37234 * 16 15 13 31 31 H 1.09000 * 110.05014 * 142.20973 * 16 15 13 32 32 H 1.00904 * 110.99743 * 239.35957 * 17 16 15 33 33 H 1.09002 * 109.12975 * 63.92935 * 20 10 9 34 34 H 1.09001 * 109.12784 * 304.77113 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9519 -3.6681 -1.2646 12 6 4.0637 -4.7075 -1.1347 13 6 3.4695 -6.0918 -0.8621 14 1 3.0054 -6.5363 -1.7424 15 6 4.6185 -6.9684 -0.2797 16 6 4.6913 -6.5043 1.1916 17 7 3.3781 -5.9167 1.5282 18 6 2.5129 -6.0316 0.3450 19 1 1.9672 -6.9738 0.3948 20 6 1.5221 -4.8918 0.2384 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8895 23 1 0.6241 -2.5567 0.8904 24 1 3.3876 -2.6909 -1.4730 25 1 2.2811 -3.9497 -2.0763 26 1 4.7230 -4.4296 -0.3124 27 1 4.6390 -4.7378 -2.0601 28 1 5.5574 -6.7663 -0.7952 29 1 4.3677 -8.0275 -0.3385 30 1 5.4738 -5.7542 1.3057 31 1 4.8951 -7.3549 1.8421 32 1 3.4753 -4.9536 1.8130 33 1 0.8375 -5.0896 -0.5865 34 1 0.9535 -4.8249 1.1660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885372145.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:32 Heat of formation + Delta-G solvation = -2.715500 kcal Electronic energy + Delta-G solvation = -14536.604039 eV Core-core repulsion = 12275.484839 eV Total energy + Delta-G solvation = -2261.119200 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.77144 -35.86709 -32.68261 -31.80722 -29.81138 -28.33282 -26.50463 -23.39683 -22.65942 -21.05311 -20.48927 -18.52806 -16.47191 -15.77861 -15.28416 -14.86909 -14.33869 -14.05874 -13.88816 -13.12940 -12.58234 -12.22641 -12.15572 -11.68775 -11.58176 -11.41784 -11.17775 -11.03731 -10.74558 -10.58138 -10.40312 -10.13926 -9.88622 -9.61495 -9.16584 -8.44866 -8.13106 -7.29524 -6.03719 -4.05058 3.30074 3.37602 3.42101 4.41273 4.49798 4.73950 4.94608 5.01232 5.20413 5.32188 5.46485 5.54487 5.67847 5.71469 5.81483 5.90902 6.01417 6.07620 6.12740 6.18060 6.24703 6.34703 6.53535 6.65514 6.72583 7.22288 7.31656 7.33830 7.78926 7.80767 8.08026 8.19074 8.53277 9.02825 9.59267 11.07245 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.052048 B = 0.007896 C = 0.007609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.838268 B = 3545.255818 C = 3679.199316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.531 5.531 11 C 0.060 3.940 12 C -0.110 4.110 13 C -0.119 4.119 14 H 0.081 0.919 15 C -0.138 4.138 16 C 0.047 3.953 17 N -0.672 5.672 18 C 0.091 3.909 19 H 0.070 0.930 20 C 0.049 3.951 21 H 0.261 0.739 22 H -0.009 1.009 23 H 0.031 0.969 24 H 0.084 0.916 25 H 0.020 0.980 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.354 0.646 33 H 0.028 0.972 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 -11.261 -1.452 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.256 5.256 11 C -0.069 4.069 12 C -0.148 4.148 13 C -0.139 4.139 14 H 0.099 0.901 15 C -0.176 4.176 16 C -0.083 4.083 17 N -0.302 5.302 18 C -0.020 4.020 19 H 0.088 0.912 20 C -0.080 4.080 21 H 0.070 0.930 22 H 0.009 0.991 23 H 0.049 0.951 24 H 0.102 0.898 25 H 0.038 0.962 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.172 0.828 33 H 0.046 0.954 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.075 -11.620 -0.685 13.622 hybrid contribution 0.145 1.451 -1.311 1.961 sum 7.219 -10.169 -1.995 12.630 Atomic orbital electron populations 1.69970 1.06067 1.26667 1.51100 1.24994 0.94857 0.99326 0.95478 0.86452 0.80043 0.83472 0.77509 1.19700 1.21145 1.20987 1.21177 0.93475 0.89904 1.49894 0.91867 1.19724 0.90075 0.87306 0.96159 1.62348 1.28476 1.02467 1.32274 1.21960 0.94980 0.99120 0.90812 1.21614 0.98341 0.93750 1.01072 1.22827 0.96222 0.96137 0.98680 0.90096 1.23005 0.98807 0.99456 0.96343 1.22642 0.91749 0.99024 0.94836 1.62005 1.10247 1.25376 1.32622 1.21768 0.94045 0.97971 0.88180 0.91190 1.21811 0.94968 0.90392 1.00854 0.92973 0.99148 0.95102 0.89783 0.96172 0.91655 0.92567 0.91441 0.91735 0.93242 0.91482 0.82789 0.95393 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.12 8.41 -34.44 -0.29 -14.41 16 8 H 0.06 1.75 7.24 -52.49 -0.38 1.37 16 9 C 0.19 5.00 4.71 -4.98 -0.02 4.97 16 10 N -0.53 -11.25 4.32 -237.34 -1.03 -12.27 16 11 C 0.06 1.15 5.30 -3.91 -0.02 1.13 16 12 C -0.11 -1.71 5.10 -26.81 -0.14 -1.84 16 13 C -0.12 -1.67 3.69 -88.48 -0.33 -2.00 16 14 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.14 -1.66 6.31 -24.47 -0.15 -1.81 16 16 C 0.05 0.61 6.83 -2.60 -0.02 0.60 16 17 N -0.67 -10.41 7.21 -105.40 -0.76 -11.17 16 18 C 0.09 1.41 3.21 -67.86 -0.22 1.19 16 19 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 20 C 0.05 0.90 4.89 -4.74 -0.02 0.88 16 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 22 H -0.01 -0.26 8.11 -51.93 -0.42 -0.68 16 23 H 0.03 0.86 7.99 -51.93 -0.42 0.44 16 24 H 0.08 1.77 6.77 -51.93 -0.35 1.42 16 25 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 26 H 0.06 1.06 6.92 -51.93 -0.36 0.70 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.75 7.98 -51.93 -0.41 0.33 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.63 7.82 -51.93 -0.41 0.22 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.35 6.06 8.20 -39.29 -0.32 5.74 16 33 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.07 1.41 8.02 -51.93 -0.42 1.00 16 LS Contribution 263.89 15.07 3.98 3.98 Total: -1.00 -28.68 263.89 -8.98 -37.66 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.58 Total: 1.07 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.31 Total: -9.84 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -1.05 Total: -49.45 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.68 -8.98 -37.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372145.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.944 kcal (2) G-P(sol) polarization free energy of solvation -28.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds