Wall clock time and date at job start Mon Mar 30 2020 02:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48504 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46892 * 299.99616 * 3 2 1 6 6 H 1.48495 * 109.47318 * 59.99251 * 3 2 1 7 7 C 1.37878 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99656 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99864 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47170 * 179.97438 * 9 7 2 11 11 C 1.46978 * 110.91787 * 292.85636 * 10 9 7 12 12 C 1.52752 * 108.70055 * 171.78723 * 11 10 9 13 13 C 1.53089 * 110.36351 * 61.05541 * 12 11 10 14 14 H 1.08995 * 112.96551 * 74.08059 * 13 12 11 15 15 C 1.55817 * 106.80165 * 198.57275 * 13 12 11 16 16 C 1.54448 * 102.81056 * 78.60266 * 15 13 12 17 17 N 1.47754 * 107.13631 * 22.75126 * 16 15 13 18 18 C 1.47031 * 107.97340 * 1.23260 * 17 16 15 19 19 H 1.08999 * 108.98728 * 90.71389 * 18 17 16 20 20 C 1.46704 * 111.00147 * 169.99741 * 10 9 7 21 21 H 0.97003 * 120.00049 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47602 * 59.99121 * 9 7 2 23 23 H 1.09004 * 109.46902 * 299.99022 * 9 7 2 24 24 H 1.09000 * 109.61307 * 52.01822 * 11 10 9 25 25 H 1.09004 * 109.73587 * 291.62617 * 11 10 9 26 26 H 1.09006 * 109.31857 * 300.77701 * 12 11 10 27 27 H 1.09000 * 109.32064 * 181.33383 * 12 11 10 28 28 H 1.09005 * 110.74072 * 320.27953 * 15 13 12 29 29 H 1.08993 * 110.90601 * 197.01040 * 15 13 12 30 30 H 1.08995 * 109.90486 * 263.37234 * 16 15 13 31 31 H 1.09000 * 110.05014 * 142.20973 * 16 15 13 32 32 H 1.00904 * 110.99743 * 239.35957 * 17 16 15 33 33 H 1.09002 * 109.12975 * 63.92935 * 20 10 9 34 34 H 1.09001 * 109.12784 * 304.77113 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9519 -3.6681 -1.2646 12 6 4.0637 -4.7075 -1.1347 13 6 3.4695 -6.0918 -0.8621 14 1 3.0054 -6.5363 -1.7424 15 6 4.6185 -6.9684 -0.2797 16 6 4.6913 -6.5043 1.1916 17 7 3.3781 -5.9167 1.5282 18 6 2.5129 -6.0316 0.3450 19 1 1.9672 -6.9738 0.3948 20 6 1.5221 -4.8918 0.2384 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8895 23 1 0.6241 -2.5567 0.8904 24 1 3.3876 -2.6909 -1.4730 25 1 2.2811 -3.9497 -2.0763 26 1 4.7230 -4.4296 -0.3124 27 1 4.6390 -4.7378 -2.0601 28 1 5.5574 -6.7663 -0.7952 29 1 4.3677 -8.0275 -0.3385 30 1 5.4738 -5.7542 1.3057 31 1 4.8951 -7.3549 1.8421 32 1 3.4753 -4.9536 1.8130 33 1 0.8375 -5.0896 -0.5865 34 1 0.9535 -4.8249 1.1660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885372145.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:32 Heat of formation + Delta-G solvation = -23.378498 kcal Electronic energy + Delta-G solvation = -14537.500053 eV Core-core repulsion = 12275.484839 eV Total energy + Delta-G solvation = -2262.015215 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.06672 -37.45172 -34.74616 -33.14415 -31.31379 -29.63550 -28.33866 -25.09809 -24.11568 -22.74916 -21.59170 -19.86737 -18.52819 -17.28347 -16.63537 -16.39219 -15.98090 -15.66353 -15.29187 -14.63367 -14.09309 -13.91869 -13.75969 -13.15462 -12.91722 -12.80638 -12.74650 -12.56383 -12.53078 -12.10586 -12.03590 -11.62216 -11.41628 -11.18969 -10.94147 -10.63517 -9.30170 -9.08177 -8.22248 -6.32434 1.39762 1.40732 1.54103 2.38867 3.10121 3.23961 3.34672 3.73664 3.80849 3.99450 4.30445 4.35150 4.40440 4.45450 4.58154 4.65038 4.70685 4.76033 4.89393 4.97815 5.04880 5.14892 5.16552 5.21568 5.25031 5.35479 5.42604 5.63566 6.02284 6.10414 6.31657 6.51352 6.59903 6.83948 7.37439 8.89333 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.052048 B = 0.007896 C = 0.007609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.838268 B = 3545.255818 C = 3679.199316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.532 5.532 11 C 0.059 3.941 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.094 0.906 15 C -0.125 4.125 16 C 0.043 3.957 17 N -0.681 5.681 18 C 0.093 3.907 19 H 0.084 0.916 20 C 0.050 3.950 21 H 0.264 0.736 22 H -0.040 1.040 23 H 0.002 0.998 24 H 0.061 0.939 25 H 0.016 0.984 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.341 0.659 33 H 0.025 0.975 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.123 -12.178 -1.872 15.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.558 4.558 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.257 5.257 11 C -0.069 4.069 12 C -0.137 4.137 13 C -0.138 4.138 14 H 0.113 0.887 15 C -0.164 4.164 16 C -0.086 4.086 17 N -0.311 5.311 18 C -0.017 4.017 19 H 0.102 0.898 20 C -0.079 4.079 21 H 0.073 0.927 22 H -0.022 1.022 23 H 0.020 0.980 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.158 0.842 33 H 0.044 0.956 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.065 -12.573 -1.109 15.539 hybrid contribution -0.511 1.696 -1.170 2.123 sum 8.554 -10.877 -2.279 14.024 Atomic orbital electron populations 1.70099 1.07795 1.27867 1.51876 1.25937 0.95742 1.03285 0.94816 0.85312 0.78949 0.78493 0.77722 1.18670 1.20398 1.20406 1.21456 0.93570 0.90943 1.49870 0.91869 1.19369 0.90147 0.89094 0.93291 1.62269 1.27375 1.02444 1.33564 1.21987 0.95786 0.99520 0.89621 1.21535 0.96765 0.93252 1.02142 1.22838 0.96689 0.95716 0.98536 0.88738 1.22953 0.98501 0.99802 0.95113 1.22768 0.90377 0.99386 0.96051 1.62067 1.11785 1.24490 1.32719 1.21739 0.93939 0.96674 0.89359 0.89829 1.21849 0.95855 0.90151 1.00011 0.92675 1.02216 0.97969 0.92077 0.96605 0.92159 0.90137 0.89768 0.90061 0.93087 0.90167 0.84226 0.95642 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.01 13.29 21.45 0.28 -56.73 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 44.56 29.54 68.60 2.03 46.58 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.52 -29.74 8.41 25.60 0.22 -29.53 16 8 H 0.06 3.54 7.24 -2.91 -0.02 3.52 16 9 C 0.21 11.27 4.71 85.56 0.40 11.67 16 10 N -0.53 -23.08 4.32 -904.81 -3.91 -26.99 16 11 C 0.06 2.28 5.30 86.21 0.46 2.74 16 12 C -0.10 -2.87 5.10 30.54 0.16 -2.71 16 13 C -0.12 -2.97 3.69 -9.41 -0.03 -3.00 16 14 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.13 -2.51 6.31 32.06 0.20 -2.31 16 16 C 0.04 1.00 6.83 86.63 0.59 1.59 16 17 N -0.68 -20.07 7.21 -487.37 -3.51 -23.58 16 18 C 0.09 2.75 3.21 44.75 0.14 2.89 16 19 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 20 C 0.05 1.87 4.89 85.82 0.42 2.29 16 21 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 22 H -0.04 -2.36 8.11 -2.39 -0.02 -2.38 16 23 H 0.00 0.13 7.99 -2.38 -0.02 0.11 16 24 H 0.06 2.61 6.77 -2.39 -0.02 2.60 16 25 H 0.02 0.62 8.11 -2.38 -0.02 0.60 16 26 H 0.06 1.82 6.92 -2.38 -0.02 1.81 16 27 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 1.46 7.98 -2.38 -0.02 1.44 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.17 7.82 -2.39 -0.02 1.15 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.34 11.51 8.20 -89.69 -0.74 10.77 16 33 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 34 H 0.06 2.41 8.02 -2.39 -0.02 2.39 16 Total: -1.00 -62.51 263.89 -1.77 -64.28 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.33 Total: 12.34 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 3.02 Total: -15.90 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -7.14 Total: -107.30 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -62.51 -1.77 -64.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372145.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.898 kcal (2) G-P(sol) polarization free energy of solvation -62.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds