Wall clock time and date at job start Mon Mar 30 2020 02:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99654 * 2 1 4 4 H 1.48498 * 109.47604 * 270.00437 * 3 2 1 5 5 H 1.48507 * 109.47232 * 30.00709 * 3 2 1 6 6 H 1.48502 * 109.46984 * 150.00317 * 3 2 1 7 7 C 1.37872 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99659 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00371 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.47452 * 175.29108 * 9 7 2 11 11 C 1.48074 * 110.99967 * 304.71416 * 10 9 7 12 12 C 1.54974 * 104.81869 * 213.96133 * 11 10 9 13 13 C 1.55309 * 101.73453 * 36.67678 * 12 11 10 14 14 C 1.47150 * 110.98863 * 184.21556 * 10 9 7 15 15 C 1.53554 * 111.15721 * 244.46738 * 14 10 9 16 16 C 1.54559 * 104.79914 * 120.58103 * 15 14 10 17 17 N 1.48632 * 104.61735 * 23.74063 * 16 15 14 18 18 C 1.48731 * 104.33309 * 320.95828 * 17 16 15 19 19 H 0.96999 * 120.00304 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47025 * 55.28787 * 9 7 2 21 21 H 1.09007 * 109.46781 * 295.29265 * 9 7 2 22 22 H 1.09002 * 110.36362 * 95.13180 * 11 10 9 23 23 H 1.08994 * 110.46119 * 332.85067 * 11 10 9 24 24 H 1.08992 * 110.97958 * 278.56663 * 12 11 10 25 25 H 1.08996 * 110.97527 * 154.78445 * 12 11 10 26 26 H 1.09002 * 110.74648 * 83.27013 * 13 12 11 27 27 H 1.08997 * 110.74647 * 206.42891 * 13 12 11 28 28 H 1.08998 * 110.37183 * 239.41567 * 15 14 10 29 29 H 1.09000 * 110.37110 * 1.64047 * 15 14 10 30 30 H 1.08995 * 110.40704 * 142.52463 * 16 15 14 31 31 H 1.08998 * 110.40924 * 264.84521 * 16 15 14 32 32 H 1.00900 * 110.99819 * 80.57917 * 17 16 15 33 33 H 1.08991 * 110.44411 * 280.07936 * 18 17 16 34 34 H 1.08997 * 110.43903 * 157.55444 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0013 -2.5742 0.1121 11 6 3.4365 -3.2414 1.3073 12 6 4.5598 -4.1881 1.8007 13 6 5.8323 -3.3460 1.5116 14 6 5.4688 -2.6060 0.2154 15 6 6.0949 -3.3079 -0.9983 16 6 7.0167 -2.2446 -1.6373 17 7 7.3315 -1.3061 -0.5286 18 6 6.0552 -1.1856 0.2255 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6089 0.8437 21 1 3.8745 -0.7547 -0.9304 22 1 2.5488 -3.8139 1.0381 23 1 3.1948 -2.5066 2.0752 24 1 4.5676 -5.1158 1.2287 25 1 4.4595 -4.3899 2.8672 26 1 6.0197 -2.6393 2.3201 27 1 6.6963 -3.9924 1.3578 28 1 6.6771 -4.1720 -0.6783 29 1 5.3200 -3.6129 -1.7016 30 1 7.9286 -2.7085 -2.0131 31 1 6.4964 -1.7244 -2.4416 32 1 8.0652 -1.6734 0.0586 33 1 5.3807 -0.4917 -0.2761 34 1 6.2465 -0.8600 1.2479 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885372540.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:51 Heat of formation + Delta-G solvation = 20.153903 kcal Electronic energy + Delta-G solvation = -14818.816597 eV Core-core repulsion = 12558.689089 eV Total energy + Delta-G solvation = -2260.127508 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95407 -35.85763 -33.10625 -31.30334 -29.27505 -28.68688 -26.78326 -23.64627 -22.62057 -21.14305 -20.45886 -18.09946 -16.84557 -16.12700 -15.36564 -14.99920 -14.34823 -14.00010 -13.42818 -13.02038 -12.63860 -12.49998 -12.39167 -11.77837 -11.68176 -11.16380 -11.14010 -10.87631 -10.57495 -10.51832 -10.35691 -10.27407 -10.07884 -9.77837 -9.12979 -8.63647 -8.47042 -7.33328 -6.06713 -4.04821 3.28848 3.35998 3.38181 4.38546 4.41736 4.68851 4.93150 5.05436 5.19690 5.26525 5.35681 5.50582 5.54246 5.69390 5.79967 5.89000 6.00221 6.08796 6.15058 6.23590 6.29900 6.43207 6.50934 6.63232 6.72494 6.79226 6.86653 7.02809 7.49286 7.56879 7.92536 8.02176 8.63979 9.00944 9.55032 11.06218 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.032717 B = 0.011787 C = 0.009734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.614710 B = 2374.865542 C = 2875.948279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.514 4.514 8 H 0.080 0.920 9 C 0.156 3.844 10 N -0.505 5.505 11 C 0.061 3.939 12 C -0.133 4.133 13 C -0.129 4.129 14 C 0.065 3.935 15 C -0.137 4.137 16 C 0.040 3.960 17 N -0.669 5.669 18 C 0.016 3.984 19 H 0.264 0.736 20 H -0.005 1.005 21 H 0.028 0.972 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.328 0.672 33 H 0.104 0.896 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.144 -5.587 1.825 14.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.699 3.301 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.098 0.902 9 C 0.030 3.970 10 N -0.229 5.229 11 C -0.067 4.067 12 C -0.171 4.171 13 C -0.167 4.167 14 C -0.027 4.027 15 C -0.176 4.176 16 C -0.090 4.090 17 N -0.295 5.295 18 C -0.114 4.114 19 H 0.073 0.927 20 H 0.012 0.988 21 H 0.046 0.954 22 H 0.093 0.907 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.142 0.858 33 H 0.122 0.878 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.788 -5.049 0.981 13.784 hybrid contribution 0.452 0.485 1.192 1.364 sum 13.240 -4.564 2.173 14.173 Atomic orbital electron populations 1.69894 1.06135 1.26861 1.50961 1.24899 0.94726 0.98842 0.94713 0.86908 0.80378 0.84034 0.78791 1.20013 1.21194 1.19059 1.21076 0.88802 0.94782 1.50564 0.90229 1.20402 0.96634 0.84872 0.95131 1.63584 1.01685 1.19534 1.38093 1.22851 0.96575 0.95729 0.91505 1.22798 0.95258 0.98717 1.00330 1.22864 0.98135 0.98691 0.97046 1.22634 0.91089 0.94928 0.94064 1.22826 0.99174 0.97670 0.97965 1.23044 0.98253 0.92370 0.95350 1.63399 1.07152 1.47167 1.11790 1.23881 0.91564 0.97421 0.98551 0.92651 0.98777 0.95449 0.90663 0.93296 0.91396 0.91650 0.91860 0.91732 0.92237 0.89734 0.91514 0.90321 0.85813 0.87826 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 21.60 27.56 -169.99 -4.69 16.92 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.34 6.41 56.52 0.36 -5.97 16 7 C -0.51 -14.58 9.00 -34.45 -0.31 -14.89 16 8 H 0.08 2.45 7.40 -52.49 -0.39 2.07 16 9 C 0.16 3.77 2.35 -4.98 -0.01 3.76 16 10 N -0.51 -10.55 4.86 -216.85 -1.05 -11.61 16 11 C 0.06 1.19 5.60 -2.13 -0.01 1.18 16 12 C -0.13 -2.00 7.09 -24.46 -0.17 -2.17 16 13 C -0.13 -1.88 6.01 -25.19 -0.15 -2.03 16 14 C 0.07 1.10 1.13 -130.51 -0.15 0.95 16 15 C -0.14 -2.04 6.45 -25.62 -0.17 -2.21 16 16 C 0.04 0.55 7.49 -2.05 -0.02 0.54 16 17 N -0.67 -9.90 7.63 -109.78 -0.84 -10.74 16 18 C 0.02 0.27 5.48 -2.46 -0.01 0.26 16 19 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 20 H -0.01 -0.13 5.74 -51.93 -0.30 -0.43 16 21 H 0.03 0.69 6.58 -51.92 -0.34 0.34 16 22 H 0.08 1.53 7.86 -51.93 -0.41 1.13 16 23 H 0.05 1.03 7.72 -51.93 -0.40 0.62 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.91 7.44 -51.93 -0.39 0.52 16 27 H 0.06 0.81 7.33 -51.93 -0.38 0.43 16 28 H 0.06 0.78 7.25 -51.93 -0.38 0.40 16 29 H 0.08 1.40 7.97 -51.93 -0.41 0.98 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.33 4.11 8.92 -39.29 -0.35 3.76 16 33 H 0.10 2.10 4.85 -51.93 -0.25 1.85 16 34 H 0.07 1.11 7.41 -51.93 -0.38 0.72 16 LS Contribution 258.04 15.07 3.89 3.89 Total: -1.00 -29.96 258.04 -8.26 -38.22 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.25 Total: 2.82 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -1.10 Total: -12.68 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -1.12 Total: -49.16 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.69 Total: 16.92 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.96 -8.26 -38.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372540.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.376 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds