Wall clock time and date at job start Mon Mar 30 2020 02:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99654 * 2 1 4 4 H 1.48498 * 109.47604 * 270.00437 * 3 2 1 5 5 H 1.48507 * 109.47232 * 30.00709 * 3 2 1 6 6 H 1.48502 * 109.46984 * 150.00317 * 3 2 1 7 7 C 1.37872 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99659 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00371 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.47452 * 175.29108 * 9 7 2 11 11 C 1.48074 * 110.99967 * 304.71416 * 10 9 7 12 12 C 1.54974 * 104.81869 * 213.96133 * 11 10 9 13 13 C 1.55309 * 101.73453 * 36.67678 * 12 11 10 14 14 C 1.47150 * 110.98863 * 184.21556 * 10 9 7 15 15 C 1.53554 * 111.15721 * 244.46738 * 14 10 9 16 16 C 1.54559 * 104.79914 * 120.58103 * 15 14 10 17 17 N 1.48632 * 104.61735 * 23.74063 * 16 15 14 18 18 C 1.48731 * 104.33309 * 320.95828 * 17 16 15 19 19 H 0.96999 * 120.00304 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47025 * 55.28787 * 9 7 2 21 21 H 1.09007 * 109.46781 * 295.29265 * 9 7 2 22 22 H 1.09002 * 110.36362 * 95.13180 * 11 10 9 23 23 H 1.08994 * 110.46119 * 332.85067 * 11 10 9 24 24 H 1.08992 * 110.97958 * 278.56663 * 12 11 10 25 25 H 1.08996 * 110.97527 * 154.78445 * 12 11 10 26 26 H 1.09002 * 110.74648 * 83.27013 * 13 12 11 27 27 H 1.08997 * 110.74647 * 206.42891 * 13 12 11 28 28 H 1.08998 * 110.37183 * 239.41567 * 15 14 10 29 29 H 1.09000 * 110.37110 * 1.64047 * 15 14 10 30 30 H 1.08995 * 110.40704 * 142.52463 * 16 15 14 31 31 H 1.08998 * 110.40924 * 264.84521 * 16 15 14 32 32 H 1.00900 * 110.99819 * 80.57917 * 17 16 15 33 33 H 1.08991 * 110.44411 * 280.07936 * 18 17 16 34 34 H 1.08997 * 110.43903 * 157.55444 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0013 -2.5742 0.1121 11 6 3.4365 -3.2414 1.3073 12 6 4.5598 -4.1881 1.8007 13 6 5.8323 -3.3460 1.5116 14 6 5.4688 -2.6060 0.2154 15 6 6.0949 -3.3079 -0.9983 16 6 7.0167 -2.2446 -1.6373 17 7 7.3315 -1.3061 -0.5286 18 6 6.0552 -1.1856 0.2255 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6089 0.8437 21 1 3.8745 -0.7547 -0.9304 22 1 2.5488 -3.8139 1.0381 23 1 3.1948 -2.5066 2.0752 24 1 4.5676 -5.1158 1.2287 25 1 4.4595 -4.3899 2.8672 26 1 6.0197 -2.6393 2.3201 27 1 6.6963 -3.9924 1.3578 28 1 6.6771 -4.1720 -0.6783 29 1 5.3200 -3.6129 -1.7016 30 1 7.9286 -2.7085 -2.0131 31 1 6.4964 -1.7244 -2.4416 32 1 8.0652 -1.6734 0.0586 33 1 5.3807 -0.4917 -0.2761 34 1 6.2465 -0.8600 1.2479 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885372540.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:51 Heat of formation + Delta-G solvation = -3.501872 kcal Electronic energy + Delta-G solvation = -14819.842388 eV Core-core repulsion = 12558.689089 eV Total energy + Delta-G solvation = -2261.153300 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.32542 -37.22284 -35.10364 -33.10095 -30.54097 -29.96376 -28.70028 -24.99939 -24.34259 -22.40953 -22.00269 -19.53835 -18.90386 -17.37811 -16.94680 -16.46118 -16.09857 -15.55352 -14.93195 -14.64231 -14.37416 -14.06456 -13.64215 -13.25922 -13.07030 -12.96501 -12.49568 -12.39566 -12.16609 -12.06921 -11.83644 -11.76050 -11.57212 -11.31617 -11.17659 -10.83107 -9.73903 -8.94690 -8.32556 -6.36294 1.31511 1.31853 1.42352 2.30070 3.00737 3.05725 3.40919 3.72476 3.78943 3.86185 4.18679 4.29150 4.30671 4.42196 4.53878 4.67424 4.73569 4.80064 4.87167 4.92391 4.97589 5.06467 5.08890 5.12016 5.26300 5.28033 5.38009 5.53405 5.65614 6.00130 6.30204 6.50521 6.64929 6.71860 7.28270 8.83901 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.032717 B = 0.011787 C = 0.009734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.614710 B = 2374.865542 C = 2875.948279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.012 3.988 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.250 1.250 7 C -0.522 4.522 8 H 0.037 0.963 9 C 0.176 3.824 10 N -0.524 5.524 11 C 0.056 3.944 12 C -0.119 4.119 13 C -0.120 4.120 14 C 0.056 3.944 15 C -0.132 4.132 16 C 0.043 3.957 17 N -0.668 5.668 18 C 0.017 3.983 19 H 0.267 0.733 20 H -0.007 1.007 21 H 0.021 0.979 22 H 0.050 0.950 23 H 0.025 0.975 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.346 0.654 33 H 0.068 0.932 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.380 -5.836 2.324 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.186 4.186 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.174 1.174 7 C -0.560 4.560 8 H 0.055 0.945 9 C 0.048 3.952 10 N -0.248 5.248 11 C -0.072 4.072 12 C -0.157 4.157 13 C -0.159 4.159 14 C -0.035 4.035 15 C -0.171 4.171 16 C -0.087 4.087 17 N -0.295 5.295 18 C -0.113 4.113 19 H 0.076 0.924 20 H 0.011 0.989 21 H 0.039 0.961 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.162 0.838 33 H 0.087 0.913 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.054 -5.321 1.483 16.978 hybrid contribution -0.601 0.469 1.007 1.263 sum 15.453 -4.852 2.489 16.387 Atomic orbital electron populations 1.70042 1.08031 1.28119 1.52445 1.25806 0.95567 1.02956 0.94251 0.85798 0.79477 0.78923 0.79324 1.19175 1.20444 1.17422 1.21334 0.91281 0.93288 1.50100 0.94476 1.20050 0.93511 0.87082 0.94530 1.63473 1.04792 1.17353 1.39136 1.22816 0.97803 0.95969 0.90581 1.22736 0.93313 0.97937 1.01710 1.22854 0.98728 0.98768 0.95514 1.22864 0.88280 0.95765 0.96610 1.22808 0.98936 0.98764 0.96618 1.23050 0.99348 0.91764 0.94545 1.63290 1.06365 1.47949 1.11927 1.23682 0.92257 0.96681 0.98692 0.92373 0.98899 0.96112 0.93101 0.95611 0.90227 0.89403 0.91379 0.88389 0.89254 0.91924 0.88100 0.92218 0.83753 0.91338 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 2 C 0.01 0.71 5.47 84.65 0.46 1.17 16 3 Si 0.94 45.17 27.56 68.60 1.89 47.06 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.25 -11.29 6.41 99.48 0.64 -10.65 16 7 C -0.52 -30.90 9.00 25.60 0.23 -30.66 16 8 H 0.04 2.44 7.40 -2.91 -0.02 2.42 16 9 C 0.18 8.64 2.35 85.56 0.20 8.84 16 10 N -0.52 -22.02 4.86 -839.99 -4.09 -26.11 16 11 C 0.06 2.22 5.60 86.75 0.49 2.71 16 12 C -0.12 -3.28 7.09 32.06 0.23 -3.05 16 13 C -0.12 -3.04 6.01 31.59 0.19 -2.85 16 14 C 0.06 1.79 1.13 4.10 0.00 1.80 16 15 C -0.13 -3.57 6.45 31.31 0.20 -3.36 16 16 C 0.04 1.06 7.49 86.50 0.65 1.71 16 17 N -0.67 -17.62 7.63 -501.24 -3.82 -21.44 16 18 C 0.02 0.57 5.48 86.17 0.47 1.04 16 19 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 20 H -0.01 -0.32 5.74 -2.38 -0.01 -0.34 16 21 H 0.02 1.06 6.58 -2.38 -0.02 1.04 16 22 H 0.05 2.19 7.86 -2.39 -0.02 2.18 16 23 H 0.03 1.11 7.72 -2.39 -0.02 1.09 16 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.07 1.68 7.44 -2.39 -0.02 1.66 16 27 H 0.10 1.89 7.33 -2.39 -0.02 1.87 16 28 H 0.09 1.90 7.25 -2.39 -0.02 1.88 16 29 H 0.06 1.99 7.97 -2.39 -0.02 1.97 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.35 7.15 8.92 -89.69 -0.80 6.35 16 33 H 0.07 2.73 4.85 -2.39 -0.01 2.72 16 34 H 0.07 2.26 7.41 -2.39 -0.02 2.24 16 Total: -1.00 -67.47 258.04 -2.38 -69.85 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.21 Total: 13.04 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 3.12 Total: -22.68 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -7.61 Total: -107.27 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.89 Total: 47.06 kcal Total: -67.47 -2.38 -69.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372540.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.349 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds