Wall clock time and date at job start Mon Mar 30 2020 02:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99855 * 2 1 4 4 H 1.48501 * 109.47340 * 270.00289 * 3 2 1 5 5 H 1.48503 * 109.46916 * 30.00573 * 3 2 1 6 6 H 1.48505 * 109.47196 * 149.99949 * 3 2 1 7 7 C 1.38816 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00587 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99318 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99191 * 180.02562 * 9 7 2 11 11 H 1.08995 * 110.30548 * 324.29196 * 10 9 7 12 12 C 1.56071 * 109.73437 * 202.00500 * 10 9 7 13 13 C 1.53930 * 101.74691 * 262.58405 * 12 10 9 14 14 H 1.09000 * 110.99541 * 79.79622 * 13 12 10 15 15 C 1.52360 * 113.27381 * 205.36186 * 13 12 10 16 16 C 1.53639 * 107.64940 * 175.63233 * 15 13 12 17 17 C 1.52827 * 110.60411 * 303.68829 * 16 15 13 18 18 C 1.53641 * 110.69827 * 53.76705 * 17 16 15 19 19 N 1.45527 * 107.86360 * 302.90711 * 18 17 16 20 20 C 1.46338 * 117.21714 * 185.53738 * 19 18 17 21 21 H 0.96995 * 120.00726 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00689 * 0.02562 * 9 7 2 23 23 H 1.09000 * 110.68307 * 144.67782 * 12 10 9 24 24 H 1.08997 * 111.45873 * 20.84100 * 12 10 9 25 25 H 1.09002 * 109.83490 * 295.19077 * 15 13 12 26 26 H 1.08996 * 109.83075 * 56.07827 * 15 13 12 27 27 H 1.09002 * 109.24927 * 63.92058 * 16 15 13 28 28 H 1.09004 * 109.24402 * 183.33375 * 16 15 13 29 29 H 1.08999 * 109.19107 * 293.47111 * 17 16 15 30 30 H 1.09000 * 109.24671 * 174.09746 * 17 16 15 31 31 H 1.08994 * 109.78271 * 183.31330 * 18 17 16 32 32 H 1.09001 * 109.77799 * 62.49753 * 18 17 16 33 33 H 1.08999 * 110.15576 * 327.18642 * 20 19 18 34 34 H 1.09001 * 110.15358 * 88.94709 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9662 -3.5692 -0.5972 12 6 1.1423 -4.7942 -0.5510 13 6 0.6177 -5.4308 0.7487 14 1 -0.1987 -4.8437 1.1692 15 6 0.2102 -6.8895 0.5828 16 6 -0.1844 -7.4233 1.9684 17 6 0.9611 -7.2370 2.9628 18 6 1.4244 -5.7723 2.9892 19 7 1.8102 -5.4016 1.6359 20 6 2.4049 -4.0777 1.4483 21 1 -0.4851 0.8399 0.0004 22 1 0.3556 -2.3881 -0.0005 23 1 1.7248 -5.5123 -1.1281 24 1 0.3221 -4.3929 -1.1462 25 1 -0.6390 -6.9613 -0.0968 26 1 1.0481 -7.4651 0.1896 27 1 -1.0608 -6.8826 2.3256 28 1 -0.4245 -8.4837 1.8898 29 1 1.7967 -7.8727 2.6700 30 1 0.6231 -7.5248 3.9583 31 1 2.2785 -5.6676 3.6581 32 1 0.6088 -5.1336 3.3284 33 1 1.9766 -3.3697 2.1578 34 1 3.4862 -4.1303 1.5755 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885372624.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:13 Heat of formation + Delta-G solvation = 6.775111 kcal Electronic energy + Delta-G solvation = -14381.176686 eV Core-core repulsion = 12120.469030 eV Total energy + Delta-G solvation = -2260.707656 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.45153 -35.43976 -33.10633 -31.86260 -30.42616 -27.29702 -26.76630 -23.57159 -22.46783 -21.12245 -19.70111 -19.41161 -17.18754 -15.41386 -15.18301 -14.54212 -14.28862 -14.07562 -13.58971 -13.18424 -12.80284 -12.60702 -12.15041 -11.96883 -11.49410 -11.04846 -10.92482 -10.73794 -10.59754 -10.52143 -10.37553 -10.14332 -10.04833 -9.77372 -9.63240 -8.92844 -7.85551 -6.95838 -5.77370 -3.06398 3.43351 3.48568 3.50151 4.39502 4.60831 4.95045 4.97344 5.08150 5.40970 5.46565 5.51171 5.64531 5.71148 5.77764 5.83822 5.85433 6.01035 6.02489 6.15851 6.19852 6.24442 6.29085 6.35544 6.46718 6.55954 6.68614 6.82197 7.00701 7.42754 7.69895 7.78111 8.41731 9.52316 10.10396 10.44847 11.45274 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057611 B = 0.007331 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.901914 B = 3818.613857 C = 3926.595622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.172 3.828 11 H 0.057 0.943 12 C -0.122 4.122 13 C 0.068 3.932 14 H 0.051 0.949 15 C -0.105 4.105 16 C -0.119 4.119 17 C -0.112 4.112 18 C 0.059 3.941 19 N -0.537 5.537 20 C 0.027 3.973 21 H 0.255 0.745 22 H 0.383 0.617 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.047 0.953 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 -13.612 3.235 14.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.362 5.362 10 C 0.060 3.940 11 H 0.075 0.925 12 C -0.160 4.160 13 C -0.040 4.040 14 H 0.069 0.931 15 C -0.142 4.142 16 C -0.157 4.157 17 C -0.149 4.149 18 C -0.069 4.069 19 N -0.262 5.262 20 C -0.103 4.103 21 H 0.065 0.935 22 H 0.217 0.783 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.450 -13.799 3.133 14.224 hybrid contribution -0.407 1.616 0.492 1.738 sum 1.042 -12.183 3.625 12.753 Atomic orbital electron populations 1.69659 1.05142 1.25670 1.57730 1.24752 0.95507 0.97728 1.02968 0.86191 0.78657 0.83818 0.77542 1.21669 1.21818 1.20748 1.19284 0.91079 0.84146 1.42646 0.91082 1.42543 1.05706 0.99801 1.88117 1.21437 0.94488 0.85970 0.92077 0.92473 1.22789 0.99654 0.97766 0.95839 1.22478 0.92091 0.95206 0.94179 0.93103 1.21521 1.00747 0.95682 0.96299 1.21566 0.98016 1.00337 0.95759 1.21568 0.98412 0.96524 0.98440 1.21894 0.98810 0.95492 0.90735 1.62763 1.25657 1.30090 1.07731 1.23494 0.98515 0.87565 1.00757 0.93518 0.78282 0.91229 0.90841 0.92001 0.91177 0.92635 0.92396 0.91573 0.92321 0.91411 0.95253 0.93496 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.72 -18.33 5.06 -50.92 -0.26 -18.59 16 10 C 0.17 3.55 3.71 -65.33 -0.24 3.31 16 11 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 12 C -0.12 -2.12 6.27 -24.60 -0.15 -2.28 16 13 C 0.07 1.12 2.60 -66.58 -0.17 0.95 16 14 H 0.05 0.93 8.05 -51.93 -0.42 0.51 16 15 C -0.10 -1.38 5.67 -26.73 -0.15 -1.54 16 16 C -0.12 -1.42 5.95 -26.49 -0.16 -1.58 16 17 C -0.11 -1.35 6.06 -26.49 -0.16 -1.52 16 18 C 0.06 0.88 5.85 -4.23 -0.02 0.85 16 19 N -0.54 -8.99 4.66 -225.06 -1.05 -10.04 16 20 C 0.03 0.53 6.65 -3.18 -0.02 0.51 16 21 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.38 10.37 7.72 -40.82 -0.32 10.05 16 23 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 24 H 0.07 1.32 7.98 -51.93 -0.41 0.91 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.03 0.47 8.04 -51.93 -0.42 0.05 16 33 H 0.05 1.03 7.85 -51.93 -0.41 0.62 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 268.99 15.07 4.05 4.05 Total: -1.00 -29.49 268.99 -8.63 -38.11 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.74 Total: 5.29 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.33 Total: -8.66 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.58 Total: -56.30 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.49 -8.63 -38.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372624.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.887 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds