Wall clock time and date at job start Mon Mar 30 2020 02:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99855 * 2 1 4 4 H 1.48501 * 109.47340 * 270.00289 * 3 2 1 5 5 H 1.48503 * 109.46916 * 30.00573 * 3 2 1 6 6 H 1.48505 * 109.47196 * 149.99949 * 3 2 1 7 7 C 1.38816 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00587 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99318 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99191 * 180.02562 * 9 7 2 11 11 H 1.08995 * 110.30548 * 324.29196 * 10 9 7 12 12 C 1.56071 * 109.73437 * 202.00500 * 10 9 7 13 13 C 1.53930 * 101.74691 * 262.58405 * 12 10 9 14 14 H 1.09000 * 110.99541 * 79.79622 * 13 12 10 15 15 C 1.52360 * 113.27381 * 205.36186 * 13 12 10 16 16 C 1.53639 * 107.64940 * 175.63233 * 15 13 12 17 17 C 1.52827 * 110.60411 * 303.68829 * 16 15 13 18 18 C 1.53641 * 110.69827 * 53.76705 * 17 16 15 19 19 N 1.45527 * 107.86360 * 302.90711 * 18 17 16 20 20 C 1.46338 * 117.21714 * 185.53738 * 19 18 17 21 21 H 0.96995 * 120.00726 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00689 * 0.02562 * 9 7 2 23 23 H 1.09000 * 110.68307 * 144.67782 * 12 10 9 24 24 H 1.08997 * 111.45873 * 20.84100 * 12 10 9 25 25 H 1.09002 * 109.83490 * 295.19077 * 15 13 12 26 26 H 1.08996 * 109.83075 * 56.07827 * 15 13 12 27 27 H 1.09002 * 109.24927 * 63.92058 * 16 15 13 28 28 H 1.09004 * 109.24402 * 183.33375 * 16 15 13 29 29 H 1.08999 * 109.19107 * 293.47111 * 17 16 15 30 30 H 1.09000 * 109.24671 * 174.09746 * 17 16 15 31 31 H 1.08994 * 109.78271 * 183.31330 * 18 17 16 32 32 H 1.09001 * 109.77799 * 62.49753 * 18 17 16 33 33 H 1.08999 * 110.15576 * 327.18642 * 20 19 18 34 34 H 1.09001 * 110.15358 * 88.94709 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9662 -3.5692 -0.5972 12 6 1.1423 -4.7942 -0.5510 13 6 0.6177 -5.4308 0.7487 14 1 -0.1987 -4.8437 1.1692 15 6 0.2102 -6.8895 0.5828 16 6 -0.1844 -7.4233 1.9684 17 6 0.9611 -7.2370 2.9628 18 6 1.4244 -5.7723 2.9892 19 7 1.8102 -5.4016 1.6359 20 6 2.4049 -4.0777 1.4483 21 1 -0.4851 0.8399 0.0004 22 1 0.3556 -2.3881 -0.0005 23 1 1.7248 -5.5123 -1.1281 24 1 0.3221 -4.3929 -1.1462 25 1 -0.6390 -6.9613 -0.0968 26 1 1.0481 -7.4651 0.1896 27 1 -1.0608 -6.8826 2.3256 28 1 -0.4245 -8.4837 1.8898 29 1 1.7967 -7.8727 2.6700 30 1 0.6231 -7.5248 3.9583 31 1 2.2785 -5.6676 3.6581 32 1 0.6088 -5.1336 3.3284 33 1 1.9766 -3.3697 2.1578 34 1 3.4862 -4.1303 1.5755 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885372624.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:12 Heat of formation + Delta-G solvation = -12.694089 kcal Electronic energy + Delta-G solvation = -14382.020934 eV Core-core repulsion = 12120.469030 eV Total energy + Delta-G solvation = -2261.551904 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.80432 -37.01086 -34.83763 -33.20532 -32.22211 -28.90425 -28.11156 -25.58193 -23.73240 -22.34718 -21.34438 -20.61445 -19.28775 -17.00150 -16.62963 -16.07165 -15.82969 -15.34536 -15.23637 -14.78859 -14.29453 -13.94940 -13.45706 -13.29663 -13.15563 -12.87313 -12.50728 -12.41736 -12.20020 -11.98032 -11.81414 -11.67064 -11.48896 -11.17547 -11.11283 -10.98279 -9.34171 -9.00053 -7.97422 -5.26857 1.45445 1.47289 1.55617 2.53638 3.06557 3.34480 3.77772 3.78304 3.95370 4.07810 4.15734 4.22085 4.37301 4.41302 4.57048 4.62032 4.67093 4.82334 4.90576 4.93839 5.09573 5.10640 5.13891 5.22216 5.27552 5.33597 5.38186 5.49096 5.54725 6.02914 6.26380 6.37904 7.30169 8.05298 8.28903 9.26099 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057611 B = 0.007331 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.901914 B = 3818.613857 C = 3926.595622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.243 4.243 8 H 0.077 0.923 9 N -0.732 5.732 10 C 0.161 3.839 11 H 0.056 0.944 12 C -0.113 4.113 13 C 0.070 3.930 14 H 0.024 0.976 15 C -0.099 4.099 16 C -0.119 4.119 17 C -0.105 4.105 18 C 0.053 3.947 19 N -0.530 5.530 20 C 0.037 3.963 21 H 0.251 0.749 22 H 0.371 0.629 23 H 0.094 0.906 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.012 0.988 33 H 0.013 0.987 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.778 -15.336 3.362 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.372 5.372 10 C 0.051 3.949 11 H 0.074 0.926 12 C -0.151 4.151 13 C -0.038 4.038 14 H 0.042 0.958 15 C -0.137 4.137 16 C -0.157 4.157 17 C -0.143 4.143 18 C -0.076 4.076 19 N -0.255 5.255 20 C -0.093 4.093 21 H 0.060 0.940 22 H 0.203 0.797 23 H 0.112 0.888 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.030 0.970 33 H 0.031 0.969 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.311 -15.571 3.264 16.076 hybrid contribution -0.641 2.090 0.468 2.236 sum 1.670 -13.480 3.733 14.087 Atomic orbital electron populations 1.69820 1.06683 1.26077 1.59587 1.25582 0.96380 1.01160 1.03689 0.85132 0.77660 0.79391 0.77537 1.21176 1.22282 1.19460 1.19669 0.91508 0.85252 1.41046 0.90556 1.42700 1.05260 1.00930 1.88309 1.21692 0.94760 0.85287 0.93130 0.92593 1.22728 0.98966 0.96920 0.96516 1.22494 0.91032 0.97202 0.93108 0.95840 1.21510 1.01531 0.92938 0.97681 1.21590 0.97604 1.01818 0.94647 1.21550 0.98769 0.94074 0.99863 1.22068 0.98594 0.97317 0.89591 1.62874 1.25778 1.27738 1.09083 1.23220 0.99022 0.88367 0.98733 0.94028 0.79708 0.88784 0.91780 0.90755 0.90287 0.93260 0.89716 0.90764 0.90240 0.90747 0.97012 0.96858 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.45 13.06 21.65 0.28 -60.16 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 3 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.24 -13.77 9.97 84.03 0.84 -12.93 16 8 H 0.08 4.15 7.83 -2.92 -0.02 4.13 16 9 N -0.73 -38.11 5.06 -315.01 -1.59 -39.70 16 10 C 0.16 6.67 3.71 46.67 0.17 6.84 16 11 H 0.06 2.32 8.11 -2.39 -0.02 2.30 16 12 C -0.11 -3.84 6.27 31.97 0.20 -3.64 16 13 C 0.07 2.22 2.60 44.68 0.12 2.33 16 14 H 0.02 0.88 8.05 -2.39 -0.02 0.86 16 15 C -0.10 -2.35 5.67 30.60 0.17 -2.18 16 16 C -0.12 -2.48 5.95 30.75 0.18 -2.29 16 17 C -0.10 -2.23 6.06 30.75 0.19 -2.05 16 18 C 0.05 1.50 5.85 86.78 0.51 2.00 16 19 N -0.53 -17.16 4.66 -865.95 -4.04 -21.20 16 20 C 0.04 1.45 6.65 87.03 0.58 2.03 16 21 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 22 H 0.37 20.81 7.72 -92.71 -0.72 20.10 16 23 H 0.09 2.75 8.10 -2.39 -0.02 2.73 16 24 H 0.06 2.31 7.98 -2.39 -0.02 2.29 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.01 0.37 8.04 -2.39 -0.02 0.35 16 33 H 0.01 0.59 7.85 -2.39 -0.02 0.57 16 34 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -63.52 268.99 0.44 -63.07 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.34 Total: 23.06 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 3.42 Total: -13.86 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -5.35 Total: -121.06 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -63.52 0.44 -63.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372624.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.378 kcal (2) G-P(sol) polarization free energy of solvation -63.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds