Wall clock time and date at job start Mon Mar 30 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48500 * 109.47169 * 269.99218 * 3 2 1 5 5 H 1.48498 * 109.47186 * 29.99347 * 3 2 1 6 6 H 1.48502 * 109.47223 * 149.99394 * 3 2 1 7 7 C 1.38817 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99394 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00324 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00128 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.37901 * 32.78386 * 10 9 7 12 12 C 1.55321 * 110.33467 * 154.99995 * 10 9 7 13 13 C 1.53926 * 102.08721 * 96.68631 * 12 10 9 14 14 H 1.09002 * 110.99978 * 280.63768 * 13 12 10 15 15 C 1.52367 * 113.27125 * 155.07306 * 13 12 10 16 16 C 1.53633 * 107.60039 * 185.06836 * 15 13 12 17 17 C 1.52818 * 110.61230 * 56.40155 * 16 15 13 18 18 C 1.53635 * 110.65160 * 306.13666 * 17 16 15 19 19 N 1.45538 * 107.90318 * 57.10109 * 18 17 16 20 20 C 1.46229 * 117.28266 * 174.40471 * 19 18 17 21 21 H 0.97003 * 120.00180 * 0.02562 * 1 2 3 22 22 H 0.97004 * 119.99880 * 0.02562 * 9 7 2 23 23 H 1.08998 * 110.91296 * 338.48642 * 12 10 9 24 24 H 1.09005 * 110.91185 * 214.87889 * 12 10 9 25 25 H 1.08997 * 109.83298 * 65.54052 * 15 13 12 26 26 H 1.08998 * 109.82811 * 304.59145 * 15 13 12 27 27 H 1.09007 * 109.24378 * 296.11516 * 16 15 13 28 28 H 1.08995 * 109.21610 * 176.67908 * 16 15 13 29 29 H 1.09007 * 109.24203 * 185.83762 * 17 16 15 30 30 H 1.09006 * 109.24367 * 66.44518 * 17 16 15 31 31 H 1.09002 * 109.78574 * 176.72100 * 18 17 16 32 32 H 1.09005 * 109.78165 * 297.48829 * 18 17 16 33 33 H 1.09001 * 110.12087 * 32.86584 * 20 19 18 34 34 H 1.09006 * 110.18277 * 271.11849 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5582 -3.2290 -0.5526 12 6 5.5254 -2.2782 -0.6139 13 6 6.3996 -2.0926 0.6394 14 1 6.3174 -1.0767 1.0260 15 6 7.8580 -2.4743 0.4180 16 6 8.5777 -2.3633 1.7707 17 6 7.8900 -3.2368 2.8193 18 6 6.3926 -2.9039 2.9041 19 7 5.8179 -3.0862 1.5795 20 6 4.3681 -2.9443 1.4525 21 1 -0.4850 0.8401 -0.0004 22 1 3.8646 -0.3621 0.0014 23 1 5.5571 -1.3904 -1.2453 24 1 5.8302 -3.1628 -1.1732 25 1 8.3136 -1.7928 -0.3004 26 1 7.9203 -3.4979 0.0488 27 1 8.5622 -1.3249 2.1019 28 1 9.6117 -2.6880 1.6546 29 1 8.3523 -3.0628 3.7910 30 1 8.0101 -4.2857 2.5478 31 1 5.9054 -3.5734 3.6130 32 1 6.2621 -1.8700 3.2238 33 1 4.0006 -2.2012 2.1602 34 1 3.8797 -3.9032 1.6264 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885372625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:15 Heat of formation + Delta-G solvation = 11.036878 kcal Electronic energy + Delta-G solvation = -14445.475324 eV Core-core repulsion = 12184.952472 eV Total energy + Delta-G solvation = -2260.522852 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.60457 -35.63356 -33.17670 -31.97022 -30.81927 -27.71332 -26.88295 -23.34449 -22.46159 -21.22567 -19.86242 -19.51795 -17.61220 -15.50220 -15.36773 -14.68989 -14.29756 -14.07829 -13.83277 -13.26503 -12.81651 -12.63560 -12.29566 -12.11911 -11.84040 -11.20299 -11.07536 -10.81739 -10.68432 -10.62110 -10.46435 -10.23269 -10.11678 -9.86532 -9.59575 -8.96882 -7.96729 -7.28071 -5.78754 -3.14499 3.35318 3.38277 3.43223 4.29187 4.57077 4.84953 4.86699 4.98991 5.29722 5.33656 5.42190 5.47009 5.55226 5.63651 5.69074 5.74026 5.91213 5.93209 6.02208 6.08308 6.15210 6.19585 6.21720 6.34151 6.41441 6.56123 6.70234 6.87951 7.31112 7.65226 7.99740 8.40922 9.18909 9.91518 10.11236 11.39559 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.046716 B = 0.008365 C = 0.008087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.219091 B = 3346.427497 C = 3461.666056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.092 0.908 9 N -0.744 5.744 10 C 0.177 3.823 11 H 0.068 0.932 12 C -0.125 4.125 13 C 0.066 3.934 14 H 0.049 0.951 15 C -0.104 4.104 16 C -0.119 4.119 17 C -0.112 4.112 18 C 0.059 3.941 19 N -0.536 5.536 20 C 0.028 3.972 21 H 0.259 0.741 22 H 0.360 0.640 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.046 0.954 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.483 -4.972 2.976 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.066 3.934 11 H 0.086 0.914 12 C -0.164 4.164 13 C -0.042 4.042 14 H 0.067 0.933 15 C -0.142 4.142 16 C -0.157 4.157 17 C -0.150 4.150 18 C -0.069 4.069 19 N -0.262 5.262 20 C -0.103 4.103 21 H 0.070 0.930 22 H 0.193 0.807 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.318 -5.533 2.876 17.469 hybrid contribution 0.242 2.075 0.496 2.147 sum 16.560 -3.458 3.373 17.251 Atomic orbital electron populations 1.69698 1.05074 1.25813 1.57485 1.24673 0.95226 0.97154 1.02020 0.86566 0.79127 0.85101 0.77816 1.20987 1.21725 1.20542 1.19118 0.80559 0.94790 1.42999 0.89054 1.42880 1.04055 1.01917 1.89785 1.21242 0.90788 0.89213 0.92179 0.91396 1.22728 0.95689 1.01813 0.96188 1.22506 0.94013 0.93844 0.93857 0.93320 1.21522 0.94284 1.01956 0.96473 1.21564 0.98791 0.99677 0.95663 1.21571 0.94642 1.00504 0.98263 1.21901 0.94796 0.99115 0.91117 1.62723 1.06796 1.49141 1.07512 1.23434 0.85976 1.00332 1.00523 0.93047 0.80706 0.91134 0.90689 0.92004 0.90982 0.92713 0.92305 0.92248 0.91439 0.91221 0.95363 0.93551 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.41 13.97 55.49 0.78 -28.64 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 22.30 27.74 -169.99 -4.71 17.58 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 7 C -0.24 -6.93 10.44 -15.06 -0.16 -7.08 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.74 -17.77 4.84 -51.32 -0.25 -18.02 16 10 C 0.18 3.48 3.68 -65.75 -0.24 3.24 16 11 H 0.07 1.38 8.09 -51.93 -0.42 0.96 16 12 C -0.13 -2.04 6.23 -25.02 -0.16 -2.19 16 13 C 0.07 1.01 2.62 -66.59 -0.17 0.83 16 14 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 15 C -0.10 -1.29 5.68 -26.73 -0.15 -1.44 16 16 C -0.12 -1.33 5.94 -26.50 -0.16 -1.49 16 17 C -0.11 -1.28 6.06 -26.50 -0.16 -1.44 16 18 C 0.06 0.83 5.85 -4.23 -0.02 0.81 16 19 N -0.54 -8.53 4.64 -225.15 -1.05 -9.57 16 20 C 0.03 0.51 6.65 -3.24 -0.02 0.49 16 21 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 22 H 0.36 8.52 5.66 -40.82 -0.23 8.28 16 23 H 0.07 1.15 8.02 -51.93 -0.42 0.74 16 24 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 33 H 0.05 0.96 7.85 -51.93 -0.41 0.56 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 265.94 15.07 4.01 4.01 Total: -1.00 -30.33 265.94 -8.27 -38.60 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.71 Total: 4.26 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -1.34 Total: -8.22 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.52 Total: -56.23 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.33 -8.27 -38.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.637 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds