Wall clock time and date at job start Mon Mar 30 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48500 * 109.47169 * 269.99218 * 3 2 1 5 5 H 1.48498 * 109.47186 * 29.99347 * 3 2 1 6 6 H 1.48502 * 109.47223 * 149.99394 * 3 2 1 7 7 C 1.38817 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99394 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00324 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00128 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.37901 * 32.78386 * 10 9 7 12 12 C 1.55321 * 110.33467 * 154.99995 * 10 9 7 13 13 C 1.53926 * 102.08721 * 96.68631 * 12 10 9 14 14 H 1.09002 * 110.99978 * 280.63768 * 13 12 10 15 15 C 1.52367 * 113.27125 * 155.07306 * 13 12 10 16 16 C 1.53633 * 107.60039 * 185.06836 * 15 13 12 17 17 C 1.52818 * 110.61230 * 56.40155 * 16 15 13 18 18 C 1.53635 * 110.65160 * 306.13666 * 17 16 15 19 19 N 1.45538 * 107.90318 * 57.10109 * 18 17 16 20 20 C 1.46229 * 117.28266 * 174.40471 * 19 18 17 21 21 H 0.97003 * 120.00180 * 0.02562 * 1 2 3 22 22 H 0.97004 * 119.99880 * 0.02562 * 9 7 2 23 23 H 1.08998 * 110.91296 * 338.48642 * 12 10 9 24 24 H 1.09005 * 110.91185 * 214.87889 * 12 10 9 25 25 H 1.08997 * 109.83298 * 65.54052 * 15 13 12 26 26 H 1.08998 * 109.82811 * 304.59145 * 15 13 12 27 27 H 1.09007 * 109.24378 * 296.11516 * 16 15 13 28 28 H 1.08995 * 109.21610 * 176.67908 * 16 15 13 29 29 H 1.09007 * 109.24203 * 185.83762 * 17 16 15 30 30 H 1.09006 * 109.24367 * 66.44518 * 17 16 15 31 31 H 1.09002 * 109.78574 * 176.72100 * 18 17 16 32 32 H 1.09005 * 109.78165 * 297.48829 * 18 17 16 33 33 H 1.09001 * 110.12087 * 32.86584 * 20 19 18 34 34 H 1.09006 * 110.18277 * 271.11849 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5582 -3.2290 -0.5526 12 6 5.5254 -2.2782 -0.6139 13 6 6.3996 -2.0926 0.6394 14 1 6.3174 -1.0767 1.0260 15 6 7.8580 -2.4743 0.4180 16 6 8.5777 -2.3633 1.7707 17 6 7.8900 -3.2368 2.8193 18 6 6.3926 -2.9039 2.9041 19 7 5.8179 -3.0862 1.5795 20 6 4.3681 -2.9443 1.4525 21 1 -0.4850 0.8401 -0.0004 22 1 3.8646 -0.3621 0.0014 23 1 5.5571 -1.3904 -1.2453 24 1 5.8302 -3.1628 -1.1732 25 1 8.3136 -1.7928 -0.3004 26 1 7.9203 -3.4979 0.0488 27 1 8.5622 -1.3249 2.1019 28 1 9.6117 -2.6880 1.6546 29 1 8.3523 -3.0628 3.7910 30 1 8.0101 -4.2857 2.5478 31 1 5.9054 -3.5734 3.6130 32 1 6.2621 -1.8700 3.2238 33 1 4.0006 -2.2012 2.1602 34 1 3.8797 -3.9032 1.6264 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885372625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:15 Heat of formation + Delta-G solvation = -9.606080 kcal Electronic energy + Delta-G solvation = -14446.370470 eV Core-core repulsion = 12184.952472 eV Total energy + Delta-G solvation = -2261.417998 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.87784 -37.15654 -34.87457 -33.30594 -32.61670 -29.22542 -28.12927 -25.25415 -23.72923 -22.36552 -21.49336 -20.62143 -19.72557 -17.04692 -16.71629 -16.15302 -15.77871 -15.43980 -15.24156 -14.81352 -14.38468 -14.05086 -13.69341 -13.41459 -13.25808 -12.98018 -12.51022 -12.45181 -12.18042 -11.95483 -11.81139 -11.78842 -11.50494 -11.18027 -11.14141 -11.03333 -9.48210 -9.18346 -8.05951 -5.39884 1.33094 1.36605 1.43411 2.44152 3.01128 3.24036 3.64810 3.73876 3.76538 4.05387 4.12715 4.19720 4.34242 4.38702 4.54541 4.58662 4.65132 4.80948 4.89608 4.91591 5.08475 5.09862 5.11843 5.21307 5.25088 5.31823 5.35663 5.54007 5.71553 6.05091 6.18916 6.35947 7.03515 7.79469 7.98389 9.15558 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.046716 B = 0.008365 C = 0.008087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.219091 B = 3346.427497 C = 3461.666056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.062 4.062 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.259 1.259 7 C -0.233 4.233 8 H 0.058 0.942 9 N -0.746 5.746 10 C 0.164 3.836 11 H 0.057 0.943 12 C -0.115 4.115 13 C 0.065 3.935 14 H 0.033 0.967 15 C -0.099 4.099 16 C -0.119 4.119 17 C -0.106 4.106 18 C 0.053 3.947 19 N -0.532 5.532 20 C 0.037 3.963 21 H 0.258 0.742 22 H 0.363 0.637 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.016 0.984 33 H 0.018 0.982 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.679 -4.821 2.973 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.222 1.222 6 H -0.184 1.184 7 C -0.364 4.364 8 H 0.076 0.924 9 N -0.389 5.389 10 C 0.055 3.945 11 H 0.075 0.925 12 C -0.154 4.154 13 C -0.042 4.042 14 H 0.051 0.949 15 C -0.137 4.137 16 C -0.156 4.156 17 C -0.144 4.144 18 C -0.075 4.075 19 N -0.257 5.257 20 C -0.094 4.094 21 H 0.067 0.933 22 H 0.197 0.803 23 H 0.091 0.909 24 H 0.114 0.886 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.577 -5.417 2.877 20.515 hybrid contribution -0.773 1.905 0.519 2.121 sum 18.804 -3.512 3.396 19.428 Atomic orbital electron populations 1.69878 1.07055 1.26680 1.59660 1.25485 0.96103 1.01139 1.02671 0.85417 0.78297 0.79821 0.78245 1.20000 1.22186 1.18437 1.19072 0.82538 0.93537 1.41210 0.92369 1.42844 1.02505 1.03638 1.89888 1.21485 0.92487 0.87280 0.93240 0.92463 1.22676 0.93050 1.02885 0.96750 1.22576 0.95978 0.92920 0.92771 0.94942 1.21515 0.91870 1.02550 0.97748 1.21584 0.99860 0.99570 0.94630 1.21555 0.92344 1.00806 0.99660 1.22063 0.96874 0.98555 0.90042 1.62809 1.04768 1.49253 1.08912 1.23154 0.88192 0.99323 0.98718 0.93293 0.80324 0.90929 0.88595 0.90414 0.90487 0.92946 0.89902 0.90297 0.91004 0.90998 0.96553 0.96400 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.65 13.97 21.65 0.30 -63.35 16 2 C -0.06 -3.73 5.50 84.86 0.47 -3.27 16 3 Si 0.95 46.25 27.74 68.60 1.90 48.16 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 6 H -0.26 -11.56 6.52 99.48 0.65 -10.91 16 7 C -0.23 -13.47 10.44 84.04 0.88 -12.60 16 8 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 9 N -0.75 -35.59 4.84 -316.28 -1.53 -37.12 16 10 C 0.16 6.44 3.68 46.40 0.17 6.61 16 11 H 0.06 2.35 8.09 -2.39 -0.02 2.33 16 12 C -0.12 -3.50 6.23 31.70 0.20 -3.31 16 13 C 0.07 1.85 2.62 44.68 0.12 1.97 16 14 H 0.03 1.04 8.08 -2.39 -0.02 1.02 16 15 C -0.10 -2.08 5.68 30.60 0.17 -1.90 16 16 C -0.12 -2.19 5.94 30.75 0.18 -2.00 16 17 C -0.11 -2.07 6.06 30.75 0.19 -1.88 16 18 C 0.05 1.39 5.85 86.77 0.51 1.90 16 19 N -0.53 -16.10 4.64 -866.24 -4.02 -20.12 16 20 C 0.04 1.36 6.65 87.04 0.58 1.94 16 21 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 22 H 0.36 16.76 5.66 -92.71 -0.52 16.24 16 23 H 0.07 2.20 8.02 -2.39 -0.02 2.18 16 24 H 0.10 2.54 8.10 -2.38 -0.02 2.52 16 25 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.00 8.14 -2.38 -0.02 0.99 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.07 1.37 8.14 -2.38 -0.02 1.36 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.02 0.47 8.06 -2.38 -0.02 0.45 16 33 H 0.02 0.75 7.85 -2.39 -0.02 0.73 16 34 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -66.06 265.94 0.58 -65.47 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.47 Total: 19.49 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 3.46 Total: -12.53 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -5.25 Total: -120.59 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.90 Total: 48.16 kcal Total: -66.06 0.58 -65.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.867 kcal (2) G-P(sol) polarization free energy of solvation -66.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds