Wall clock time and date at job start Mon Mar 30 2020 02:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48501 * 109.47010 * 239.99904 * 3 2 1 5 5 H 1.48497 * 109.47284 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46939 * 120.00116 * 3 2 1 7 7 C 1.38806 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99598 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00402 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00263 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.29261 * 35.70778 * 10 9 7 12 12 C 1.57106 * 110.31372 * 157.77788 * 10 9 7 13 13 C 1.53927 * 101.27336 * 140.98351 * 12 10 9 14 14 H 1.09002 * 111.00414 * 79.09916 * 13 12 10 15 15 C 1.52365 * 113.26279 * 204.66432 * 13 12 10 16 16 C 1.53634 * 107.60229 * 175.64561 * 15 13 12 17 17 C 1.52819 * 110.61473 * 303.59043 * 16 15 13 18 18 C 1.53644 * 110.64373 * 53.86844 * 17 16 15 19 19 N 1.45531 * 107.85840 * 302.87077 * 18 17 16 20 20 C 1.46332 * 116.71047 * 185.19588 * 19 18 17 21 21 H 0.97003 * 120.00308 * 0.02562 * 1 2 3 22 22 H 0.96994 * 119.99987 * 0.02562 * 9 7 2 23 23 H 1.08999 * 110.91989 * 23.22325 * 12 10 9 24 24 H 1.08994 * 111.65474 * 259.06260 * 12 10 9 25 25 H 1.08999 * 109.83469 * 295.17439 * 15 13 12 26 26 H 1.09000 * 109.83567 * 56.12419 * 15 13 12 27 27 H 1.09005 * 109.24324 * 63.88150 * 16 15 13 28 28 H 1.09003 * 109.25027 * 183.29369 * 16 15 13 29 29 H 1.09004 * 109.24714 * 174.16515 * 17 16 15 30 30 H 1.09004 * 109.24596 * 293.61055 * 17 16 15 31 31 H 1.09001 * 109.78117 * 62.45328 * 18 17 16 32 32 H 1.08994 * 109.78317 * 183.22136 * 18 17 16 33 33 H 1.08994 * 110.15701 * 327.50657 * 20 19 18 34 34 H 1.09005 * 110.15332 * 89.18874 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9660 -3.5691 0.5972 12 6 1.1496 -4.8111 0.5578 13 6 1.5407 -5.9760 -0.3693 14 1 2.4875 -6.4196 -0.0612 15 6 0.4556 -7.0388 -0.4908 16 6 0.9321 -8.0735 -1.5216 17 6 1.2502 -7.3976 -2.8549 18 6 2.2455 -6.2446 -2.6538 19 7 1.6650 -5.3159 -1.6954 20 6 2.4049 -4.0778 -1.4482 21 1 -0.4851 0.8400 -0.0004 22 1 0.3556 -2.3880 -0.0002 23 1 0.0939 -4.5634 0.4470 24 1 1.3864 -5.0437 1.5959 25 1 0.3015 -7.5219 0.4741 26 1 -0.4741 -6.5811 -0.8288 27 1 1.8283 -8.5679 -1.1466 28 1 0.1492 -8.8166 -1.6732 29 1 1.6829 -8.1311 -3.5353 30 1 0.3297 -7.0055 -3.2875 31 1 3.1873 -6.6335 -2.2665 32 1 2.4184 -5.7368 -3.6026 33 1 3.4762 -4.2555 -1.5413 34 1 2.0902 -3.3057 -2.1503 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885372627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:18 Heat of formation + Delta-G solvation = 8.192583 kcal Electronic energy + Delta-G solvation = -14306.456310 eV Core-core repulsion = 12045.810120 eV Total energy + Delta-G solvation = -2260.646190 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.46642 -35.39832 -33.13527 -31.89659 -30.46652 -27.25016 -26.73841 -23.57761 -22.45574 -21.09960 -19.93941 -19.29210 -17.08938 -15.42287 -15.20723 -14.84762 -14.20006 -14.11347 -13.52511 -13.24512 -12.79441 -12.45369 -12.22982 -11.82094 -11.55489 -11.06959 -10.97568 -10.72296 -10.63248 -10.59329 -10.37666 -10.17370 -10.06065 -9.81309 -9.60685 -8.87251 -7.83636 -6.92172 -5.73137 -3.01881 3.46029 3.50312 3.51469 4.37621 4.61732 4.91097 4.93928 5.04615 5.33262 5.46943 5.49726 5.55710 5.66826 5.70351 5.79668 5.83251 5.93419 5.98917 6.08581 6.16459 6.23888 6.25740 6.32477 6.44813 6.56927 6.61887 6.80717 7.01660 7.47512 7.72647 7.76074 8.45729 9.56647 10.15846 10.50976 11.49339 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.062947 B = 0.007027 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.709354 B = 3983.809137 C = 4137.688191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.715 5.715 10 C 0.174 3.826 11 H 0.051 0.949 12 C -0.120 4.120 13 C 0.066 3.934 14 H 0.045 0.955 15 C -0.105 4.105 16 C -0.118 4.118 17 C -0.113 4.113 18 C 0.059 3.941 19 N -0.529 5.529 20 C 0.027 3.973 21 H 0.256 0.744 22 H 0.386 0.614 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.021 0.979 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 -14.750 -2.415 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.356 5.356 10 C 0.062 3.938 11 H 0.069 0.931 12 C -0.159 4.159 13 C -0.043 4.043 14 H 0.063 0.937 15 C -0.143 4.143 16 C -0.155 4.155 17 C -0.151 4.151 18 C -0.070 4.070 19 N -0.254 5.254 20 C -0.103 4.103 21 H 0.065 0.935 22 H 0.220 0.780 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.039 0.961 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.522 -14.440 -2.643 14.895 hybrid contribution 1.087 0.735 0.104 1.317 sum 3.609 -13.705 -2.539 14.398 Atomic orbital electron populations 1.69658 1.05102 1.25751 1.57450 1.24739 0.95489 0.97650 1.02940 0.86279 0.78527 0.83631 0.77808 1.21308 1.21686 1.21297 1.19216 0.90954 0.84238 1.42962 0.91316 1.42431 1.05827 0.99455 1.87852 1.21610 0.94131 0.86415 0.91625 0.93079 1.22943 1.01348 0.94363 0.97257 1.22500 0.97133 0.94453 0.90189 0.93721 1.21520 0.99038 0.95593 0.98172 1.21558 1.00492 0.97773 0.95726 1.21581 0.99978 0.96544 0.97021 1.21928 0.95021 0.93344 0.96700 1.62875 1.50921 1.04624 1.07024 1.23593 0.93924 0.91042 1.01777 0.93453 0.77953 0.90456 0.91647 0.92027 0.90805 0.92848 0.92328 0.92330 0.91303 0.95709 0.91243 0.96108 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.83 9.97 -15.06 -0.15 -6.98 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.72 -18.41 5.10 -50.37 -0.26 -18.66 16 10 C 0.17 3.62 3.70 -64.75 -0.24 3.38 16 11 H 0.05 1.07 8.11 -51.93 -0.42 0.65 16 12 C -0.12 -2.10 6.44 -24.02 -0.15 -2.25 16 13 C 0.07 1.01 2.58 -66.58 -0.17 0.83 16 14 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16 15 C -0.11 -1.37 5.68 -26.73 -0.15 -1.52 16 16 C -0.12 -1.34 5.94 -26.49 -0.16 -1.50 16 17 C -0.11 -1.36 6.06 -26.49 -0.16 -1.52 16 18 C 0.06 0.83 5.81 -4.23 -0.02 0.81 16 19 N -0.53 -8.97 4.69 -225.06 -1.05 -10.02 16 20 C 0.03 0.53 6.63 -3.18 -0.02 0.51 16 21 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 22 H 0.39 10.61 7.59 -40.82 -0.31 10.30 16 23 H 0.08 1.44 7.77 -51.93 -0.40 1.03 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.02 0.34 8.04 -51.93 -0.42 -0.08 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.02 0.38 8.03 -51.93 -0.42 -0.04 16 34 H 0.08 1.89 7.95 -51.93 -0.41 1.47 16 LS Contribution 268.84 15.07 4.05 4.05 Total: -1.00 -29.75 268.84 -8.61 -38.37 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.73 Total: 5.18 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.33 Total: -8.69 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.59 Total: -56.47 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.75 -8.61 -38.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.561 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds