Wall clock time and date at job start Mon Mar 30 2020 02:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48501 * 109.47010 * 239.99904 * 3 2 1 5 5 H 1.48497 * 109.47284 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46939 * 120.00116 * 3 2 1 7 7 C 1.38806 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99598 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00402 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00263 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.29261 * 35.70778 * 10 9 7 12 12 C 1.57106 * 110.31372 * 157.77788 * 10 9 7 13 13 C 1.53927 * 101.27336 * 140.98351 * 12 10 9 14 14 H 1.09002 * 111.00414 * 79.09916 * 13 12 10 15 15 C 1.52365 * 113.26279 * 204.66432 * 13 12 10 16 16 C 1.53634 * 107.60229 * 175.64561 * 15 13 12 17 17 C 1.52819 * 110.61473 * 303.59043 * 16 15 13 18 18 C 1.53644 * 110.64373 * 53.86844 * 17 16 15 19 19 N 1.45531 * 107.85840 * 302.87077 * 18 17 16 20 20 C 1.46332 * 116.71047 * 185.19588 * 19 18 17 21 21 H 0.97003 * 120.00308 * 0.02562 * 1 2 3 22 22 H 0.96994 * 119.99987 * 0.02562 * 9 7 2 23 23 H 1.08999 * 110.91989 * 23.22325 * 12 10 9 24 24 H 1.08994 * 111.65474 * 259.06260 * 12 10 9 25 25 H 1.08999 * 109.83469 * 295.17439 * 15 13 12 26 26 H 1.09000 * 109.83567 * 56.12419 * 15 13 12 27 27 H 1.09005 * 109.24324 * 63.88150 * 16 15 13 28 28 H 1.09003 * 109.25027 * 183.29369 * 16 15 13 29 29 H 1.09004 * 109.24714 * 174.16515 * 17 16 15 30 30 H 1.09004 * 109.24596 * 293.61055 * 17 16 15 31 31 H 1.09001 * 109.78117 * 62.45328 * 18 17 16 32 32 H 1.08994 * 109.78317 * 183.22136 * 18 17 16 33 33 H 1.08994 * 110.15701 * 327.50657 * 20 19 18 34 34 H 1.09005 * 110.15332 * 89.18874 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9660 -3.5691 0.5972 12 6 1.1496 -4.8111 0.5578 13 6 1.5407 -5.9760 -0.3693 14 1 2.4875 -6.4196 -0.0612 15 6 0.4556 -7.0388 -0.4908 16 6 0.9321 -8.0735 -1.5216 17 6 1.2502 -7.3976 -2.8549 18 6 2.2455 -6.2446 -2.6538 19 7 1.6650 -5.3159 -1.6954 20 6 2.4049 -4.0778 -1.4482 21 1 -0.4851 0.8400 -0.0004 22 1 0.3556 -2.3880 -0.0002 23 1 0.0939 -4.5634 0.4470 24 1 1.3864 -5.0437 1.5959 25 1 0.3015 -7.5219 0.4741 26 1 -0.4741 -6.5811 -0.8288 27 1 1.8283 -8.5679 -1.1466 28 1 0.1492 -8.8166 -1.6732 29 1 1.6829 -8.1311 -3.5353 30 1 0.3297 -7.0055 -3.2875 31 1 3.1873 -6.6335 -2.2665 32 1 2.4184 -5.7368 -3.6026 33 1 3.4762 -4.2555 -1.5413 34 1 2.0902 -3.3057 -2.1503 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885372627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:18 Heat of formation + Delta-G solvation = -11.609357 kcal Electronic energy + Delta-G solvation = -14307.314987 eV Core-core repulsion = 12045.810120 eV Total energy + Delta-G solvation = -2261.504867 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76478 -36.96767 -34.83604 -33.19130 -32.26794 -28.82997 -28.06016 -25.56413 -23.69914 -22.27388 -21.48277 -20.53863 -19.18238 -16.84402 -16.75014 -16.32929 -15.72384 -15.29919 -15.21202 -14.80095 -14.13987 -13.70473 -13.55267 -13.35063 -13.07425 -12.83387 -12.58330 -12.38385 -12.18521 -12.04517 -11.79068 -11.68864 -11.48279 -11.19124 -11.10442 -10.91922 -9.15578 -9.02098 -7.93893 -5.23096 1.46694 1.50073 1.56230 2.56224 3.10284 3.36887 3.74761 3.78282 3.97010 4.05696 4.16104 4.29420 4.35230 4.45319 4.57245 4.57970 4.66039 4.74925 4.89462 4.98307 5.03719 5.11757 5.14662 5.24363 5.26925 5.35180 5.38181 5.52103 5.56119 6.15542 6.28010 6.44989 7.33503 8.09995 8.33999 9.29531 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.062947 B = 0.007027 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.709354 B = 3983.809137 C = 4137.688191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.728 5.728 10 C 0.163 3.837 11 H 0.050 0.950 12 C -0.113 4.113 13 C 0.072 3.928 14 H 0.058 0.942 15 C -0.103 4.103 16 C -0.114 4.114 17 C -0.110 4.110 18 C 0.055 3.945 19 N -0.545 5.545 20 C 0.040 3.960 21 H 0.251 0.749 22 H 0.373 0.627 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.947 -16.541 -2.387 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.368 5.368 10 C 0.053 3.947 11 H 0.068 0.932 12 C -0.152 4.152 13 C -0.036 4.036 14 H 0.076 0.924 15 C -0.141 4.141 16 C -0.152 4.152 17 C -0.148 4.148 18 C -0.074 4.074 19 N -0.270 5.270 20 C -0.091 4.091 21 H 0.060 0.940 22 H 0.205 0.795 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.641 -16.282 -2.619 16.889 hybrid contribution 0.778 1.209 0.083 1.440 sum 4.419 -15.073 -2.536 15.911 Atomic orbital electron populations 1.69825 1.06680 1.26141 1.59389 1.25575 0.96364 1.01122 1.03664 0.85206 0.77194 0.79143 0.78177 1.20539 1.22110 1.20218 1.19612 0.91401 0.85344 1.41321 0.90746 1.42596 1.05355 1.00681 1.88125 1.21876 0.94418 0.85670 0.92754 0.93155 1.22884 0.99563 0.93929 0.98806 1.22538 0.98538 0.94064 0.88495 0.92421 1.21522 0.97352 0.95311 0.99935 1.21553 1.01670 0.97433 0.94527 1.21581 0.98921 0.96150 0.98107 1.22062 0.96105 0.93457 0.95726 1.62847 1.50996 1.04624 1.08577 1.23182 0.94639 0.91729 0.99554 0.94001 0.79483 0.92085 0.89861 0.90043 0.92411 0.91543 0.90425 0.89811 0.92459 0.94702 0.91658 0.95036 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 3 Si 0.97 46.91 29.55 68.60 2.03 48.94 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.25 -13.98 9.97 84.03 0.84 -13.14 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.73 -38.35 5.10 -313.26 -1.60 -39.95 16 10 C 0.16 6.78 3.70 47.05 0.17 6.95 16 11 H 0.05 2.09 8.11 -2.39 -0.02 2.07 16 12 C -0.11 -3.86 6.44 32.35 0.21 -3.65 16 13 C 0.07 2.05 2.58 44.68 0.12 2.16 16 14 H 0.06 1.54 8.05 -2.39 -0.02 1.52 16 15 C -0.10 -2.42 5.68 30.60 0.17 -2.25 16 16 C -0.11 -2.18 5.94 30.75 0.18 -1.99 16 17 C -0.11 -2.32 6.06 30.75 0.19 -2.13 16 18 C 0.05 1.44 5.81 86.78 0.50 1.94 16 19 N -0.54 -17.93 4.69 -865.96 -4.06 -21.99 16 20 C 0.04 1.55 6.63 87.03 0.58 2.12 16 21 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 22 H 0.37 21.25 7.59 -92.71 -0.70 20.55 16 23 H 0.06 2.28 7.77 -2.39 -0.02 2.27 16 24 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.03 0.86 8.04 -2.39 -0.02 0.84 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.03 1.13 8.03 -2.39 -0.02 1.11 16 34 H 0.05 2.24 7.95 -2.38 -0.02 2.23 16 Total: -1.00 -64.30 268.84 0.43 -63.86 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.35 Total: 23.57 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 3.43 Total: -13.91 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -5.37 Total: -122.46 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -64.30 0.43 -63.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885372627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.255 kcal (2) G-P(sol) polarization free energy of solvation -64.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds