Wall clock time and date at job start Mon Mar 30 2020 02:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48498 * 109.47347 * 240.00388 * 3 2 1 5 5 H 1.48502 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47421 * 119.99946 * 3 2 1 7 7 C 1.37881 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00089 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99941 * 359.97438 * 7 2 1 10 10 O 1.42099 * 102.99802 * 73.12825 * 9 7 2 11 11 C 1.76194 * 102.99860 * 180.02562 * 9 7 2 12 12 C 1.38291 * 119.92522 * 270.27804 * 11 9 7 13 13 C 1.38103 * 120.07426 * 180.28400 * 12 11 9 14 14 C 1.38918 * 119.92232 * 359.43747 * 13 12 11 15 15 N 1.39672 * 120.07035 * 180.26003 * 14 13 12 16 16 C 1.38912 * 119.85053 * 0.28131 * 14 13 12 17 17 C 1.38103 * 119.92423 * 0.02562 * 16 14 13 18 18 H 0.97000 * 119.99980 * 359.97438 * 1 2 3 19 19 H 1.08004 * 119.96541 * 359.97438 * 12 11 9 20 20 H 1.08002 * 120.04122 * 179.72165 * 13 12 11 21 21 H 0.97003 * 120.00570 * 0.02562 * 15 14 13 22 22 H 0.97001 * 119.99828 * 179.97438 * 15 14 13 23 23 H 1.08001 * 120.03541 * 180.02562 * 16 14 13 24 24 H 1.07998 * 119.95667 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.6152 -2.7956 -1.3253 11 6 2.4121 -3.9216 -0.0005 12 6 2.9207 -4.3879 -1.1991 13 6 3.9267 -5.3340 -1.2027 14 6 4.4358 -5.8087 -0.0005 15 7 5.4570 -6.7616 -0.0006 16 6 3.9267 -5.3339 1.2016 17 6 2.9163 -4.3925 1.1979 18 1 -0.4850 0.8400 0.0004 19 1 2.5272 -4.0154 -2.1333 20 1 4.3203 -5.7011 -2.1390 21 1 5.8118 -7.0924 -0.8406 22 1 5.8120 -7.0921 0.8395 23 1 4.3206 -5.7006 2.1380 24 1 2.5198 -4.0233 2.1322 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042197606.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:58 Heat of formation + Delta-G solvation = -28.469435 kcal Electronic energy + Delta-G solvation = -11371.972295 eV Core-core repulsion = 9183.104340 eV Total energy + Delta-G solvation = -2188.867955 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.56918 -34.05568 -33.52766 -32.72097 -30.23233 -28.03451 -25.66012 -22.17708 -21.53745 -18.03414 -16.89190 -16.48280 -15.94932 -15.16926 -14.20792 -13.59622 -13.47702 -13.24731 -12.78320 -12.65280 -11.80042 -11.39998 -11.13390 -10.71246 -10.55596 -10.41533 -10.20776 -10.06660 -8.95130 -8.33660 -8.29354 -7.24610 -6.86376 -6.20742 -4.71268 2.03891 2.07679 3.19381 3.24200 3.27402 3.88123 4.10295 4.34828 4.45676 4.91471 5.42954 5.49834 5.63929 5.92858 6.07795 6.30385 6.37827 6.69050 6.78236 6.84853 7.35798 7.44409 7.58082 7.84827 7.95374 8.32737 9.18376 10.55482 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.048572 B = 0.009130 C = 0.008521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.325301 B = 3066.225326 C = 3285.105542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.120 3.880 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.820 4.820 8 H 0.077 0.923 9 S 1.409 4.591 10 O -0.918 6.918 11 C -0.492 4.492 12 C -0.013 4.013 13 C -0.219 4.219 14 C 0.216 3.784 15 N -0.885 5.885 16 C -0.220 4.220 17 C -0.010 4.010 18 H 0.280 0.720 19 H 0.122 0.878 20 H 0.109 0.891 21 H 0.393 0.607 22 H 0.393 0.607 23 H 0.113 0.887 24 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.442 -8.774 5.513 12.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.092 4.092 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.960 4.960 8 H 0.096 0.904 9 S 1.607 4.393 10 O -0.913 6.913 11 C -0.585 4.585 12 C -0.033 4.033 13 C -0.242 4.242 14 C 0.113 3.887 15 N -0.425 5.425 16 C -0.244 4.244 17 C -0.030 4.030 18 H 0.090 0.910 19 H 0.140 0.860 20 H 0.127 0.873 21 H 0.220 0.780 22 H 0.221 0.779 23 H 0.131 0.869 24 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.266 -8.847 5.483 11.665 hybrid contribution 2.568 0.946 -1.821 3.287 sum 7.834 -7.901 3.662 11.714 Atomic orbital electron populations 1.69842 1.06385 1.29333 1.44567 1.24727 0.94482 0.99717 0.90287 0.86462 0.79973 0.81222 0.79340 1.19801 1.20578 1.19209 1.27545 1.02051 1.06018 1.60411 0.90423 1.67717 0.83777 0.82416 1.05425 1.92772 1.71684 1.85791 1.41038 1.28965 1.18016 1.16099 0.95375 1.20930 0.91707 0.92076 0.98570 1.20621 1.03431 1.04635 0.95535 1.17807 0.87978 0.88726 0.94231 1.42430 1.42083 1.47820 1.10164 1.20605 1.03463 1.04887 0.95397 1.20611 0.92717 0.92444 0.97194 0.90963 0.85991 0.87340 0.78000 0.77949 0.86885 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.63 13.19 55.43 0.73 -23.90 14 2 C 0.12 3.33 5.46 -17.82 -0.10 3.23 14 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 14 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 14 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 14 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 14 7 C -0.82 -22.93 9.34 30.60 0.29 -22.64 14 8 H 0.08 2.17 7.81 -52.49 -0.41 1.76 14 9 S 1.41 35.17 13.38 -107.50 -1.44 33.73 14 10 O -0.92 -28.29 16.47 -35.23 -0.58 -28.87 14 11 C -0.49 -10.82 5.60 -39.55 -0.22 -11.04 14 12 C -0.01 -0.30 9.44 -39.61 -0.37 -0.67 14 13 C -0.22 -4.06 9.90 -39.38 -0.39 -4.45 14 14 C 0.22 3.52 6.75 -83.78 -0.57 2.96 14 15 N -0.89 -10.35 9.09 32.41 0.29 -10.05 14 16 C -0.22 -3.58 9.90 -39.38 -0.39 -3.97 14 17 C -0.01 -0.18 9.74 -39.61 -0.39 -0.57 14 18 H 0.28 7.35 8.31 -40.82 -0.34 7.01 14 19 H 0.12 2.97 7.30 -52.48 -0.38 2.58 14 20 H 0.11 1.76 8.06 -52.49 -0.42 1.33 14 21 H 0.39 3.87 8.84 -40.82 -0.36 3.51 14 22 H 0.39 3.64 8.84 -40.82 -0.36 3.28 14 23 H 0.11 1.48 8.06 -52.49 -0.42 1.05 14 24 H 0.13 1.89 8.06 -52.49 -0.42 1.47 14 LS Contribution 234.41 15.07 3.53 3.53 Total: -1.00 -35.63 234.41 -6.54 -42.17 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -1.92 Total: 4.39 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: -2.14 Total: -37.15 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 1.03 Total: -33.96 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.58 Total: -28.87 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 35.17 SS G_CDS: -1.44 Total: 33.73 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -35.63 -6.54 -42.17 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042197606.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.703 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds