Wall clock time and date at job start Mon Mar 30 2020 02:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48498 * 109.47347 * 240.00388 * 3 2 1 5 5 H 1.48502 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47421 * 119.99946 * 3 2 1 7 7 C 1.37881 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00089 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99941 * 359.97438 * 7 2 1 10 10 O 1.42099 * 102.99802 * 73.12825 * 9 7 2 11 11 C 1.76194 * 102.99860 * 180.02562 * 9 7 2 12 12 C 1.38291 * 119.92522 * 270.27804 * 11 9 7 13 13 C 1.38103 * 120.07426 * 180.28400 * 12 11 9 14 14 C 1.38918 * 119.92232 * 359.43747 * 13 12 11 15 15 N 1.39672 * 120.07035 * 180.26003 * 14 13 12 16 16 C 1.38912 * 119.85053 * 0.28131 * 14 13 12 17 17 C 1.38103 * 119.92423 * 0.02562 * 16 14 13 18 18 H 0.97000 * 119.99980 * 359.97438 * 1 2 3 19 19 H 1.08004 * 119.96541 * 359.97438 * 12 11 9 20 20 H 1.08002 * 120.04122 * 179.72165 * 13 12 11 21 21 H 0.97003 * 120.00570 * 0.02562 * 15 14 13 22 22 H 0.97001 * 119.99828 * 179.97438 * 15 14 13 23 23 H 1.08001 * 120.03541 * 180.02562 * 16 14 13 24 24 H 1.07998 * 119.95667 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.6152 -2.7956 -1.3253 11 6 2.4121 -3.9216 -0.0005 12 6 2.9207 -4.3879 -1.1991 13 6 3.9267 -5.3340 -1.2027 14 6 4.4358 -5.8087 -0.0005 15 7 5.4570 -6.7616 -0.0006 16 6 3.9267 -5.3339 1.2016 17 6 2.9163 -4.3925 1.1979 18 1 -0.4850 0.8400 0.0004 19 1 2.5272 -4.0154 -2.1333 20 1 4.3203 -5.7011 -2.1390 21 1 5.8118 -7.0924 -0.8406 22 1 5.8120 -7.0921 0.8395 23 1 4.3206 -5.7006 2.1380 24 1 2.5198 -4.0233 2.1322 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042197606.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:58 Heat of formation + Delta-G solvation = -56.603001 kcal Electronic energy + Delta-G solvation = -11373.192258 eV Core-core repulsion = 9183.104340 eV Total energy + Delta-G solvation = -2190.087918 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.97116 -35.78703 -35.27306 -34.83451 -31.69013 -29.40952 -27.79828 -23.62180 -22.98927 -20.06099 -18.39698 -17.65063 -17.54865 -17.21041 -16.02568 -15.21163 -15.02405 -14.96804 -14.18362 -14.11474 -13.67619 -13.25094 -13.08322 -12.72414 -12.43285 -12.15382 -11.83452 -11.52747 -11.02632 -10.39487 -9.78044 -8.98230 -8.60821 -8.17235 -6.88606 0.51943 0.61564 1.32403 1.36403 1.45666 2.04444 2.43016 2.80013 2.94529 3.03500 3.65389 3.99301 4.15285 4.19508 4.62822 4.80591 4.98366 5.21693 5.37200 5.42574 5.46678 5.80253 6.05604 6.15778 6.60947 7.04300 7.05209 8.48246 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.048572 B = 0.009130 C = 0.008521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.325301 B = 3066.225326 C = 3285.105542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.264 1.264 6 H -0.245 1.245 7 C -0.849 4.849 8 H 0.068 0.932 9 S 1.440 4.560 10 O -0.989 6.989 11 C -0.523 4.523 12 C -0.045 4.045 13 C -0.228 4.228 14 C 0.232 3.768 15 N -0.861 5.861 16 C -0.214 4.214 17 C -0.007 4.007 18 H 0.288 0.712 19 H 0.081 0.919 20 H 0.127 0.873 21 H 0.405 0.595 22 H 0.411 0.589 23 H 0.159 0.841 24 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.779 -9.773 7.514 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.788 3.212 4 H -0.211 1.211 5 H -0.188 1.188 6 H -0.168 1.168 7 C -0.989 4.989 8 H 0.086 0.914 9 S 1.642 4.358 10 O -0.984 6.984 11 C -0.620 4.620 12 C -0.065 4.065 13 C -0.252 4.252 14 C 0.125 3.875 15 N -0.401 5.401 16 C -0.238 4.238 17 C -0.027 4.027 18 H 0.097 0.903 19 H 0.099 0.901 20 H 0.145 0.855 21 H 0.235 0.765 22 H 0.242 0.758 23 H 0.176 0.824 24 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.605 -9.856 7.497 14.532 hybrid contribution 2.015 1.035 -2.408 3.306 sum 9.620 -8.821 5.089 14.009 Atomic orbital electron populations 1.69909 1.07668 1.30640 1.44776 1.25652 0.95434 1.03334 0.89683 0.85525 0.78990 0.77219 0.79515 1.21079 1.18788 1.16834 1.27881 1.01801 1.08134 1.61043 0.91363 1.66591 0.84404 0.81610 1.03229 1.92655 1.74856 1.86995 1.43911 1.28279 1.19323 1.17139 0.97272 1.20770 0.94035 0.94556 0.97159 1.20709 1.02673 1.04101 0.97712 1.17907 0.87899 0.88325 0.93386 1.42380 1.39995 1.45690 1.12056 1.21052 1.02103 1.03466 0.97154 1.21001 0.92675 0.92257 0.96733 0.90260 0.90082 0.85495 0.76539 0.75822 0.82376 0.82100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.92 13.19 21.45 0.28 -51.63 14 2 C 0.07 3.84 5.46 84.66 0.46 4.30 14 3 Si 0.97 43.40 29.54 68.60 2.03 45.43 14 4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 14 5 H -0.26 -11.03 7.11 99.48 0.71 -10.32 14 6 H -0.24 -10.05 7.11 99.48 0.71 -9.34 14 7 C -0.85 -48.87 9.34 67.74 0.63 -48.23 14 8 H 0.07 3.91 7.81 -2.91 -0.02 3.89 14 9 S 1.44 75.05 13.38 -56.49 -0.76 74.29 14 10 O -0.99 -64.80 16.47 -148.98 -2.45 -67.25 14 11 C -0.52 -23.38 5.60 22.29 0.12 -23.25 14 12 C -0.05 -2.09 9.44 22.25 0.21 -1.88 14 13 C -0.23 -8.22 9.90 22.40 0.22 -7.99 14 14 C 0.23 6.70 6.75 38.22 0.26 6.96 14 15 N -0.86 -15.82 9.09 -51.37 -0.47 -16.29 14 16 C -0.21 -6.04 9.90 22.40 0.22 -5.81 14 17 C -0.01 -0.24 9.74 22.25 0.22 -0.02 14 18 H 0.29 15.25 8.31 -92.71 -0.77 14.48 14 19 H 0.08 4.30 7.30 -2.91 -0.02 4.28 14 20 H 0.13 3.94 8.06 -2.91 -0.02 3.92 14 21 H 0.41 6.07 8.84 -92.71 -0.82 5.25 14 22 H 0.41 5.19 8.84 -92.71 -0.82 4.37 14 23 H 0.16 3.07 8.06 -2.91 -0.02 3.05 14 24 H 0.16 4.26 8.06 -2.91 -0.02 4.24 14 Total: -1.00 -80.72 234.41 0.58 -80.14 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -0.40 Total: 11.25 kcal Atomic # 6 Polarization: -78.28 SS G_CDS: 2.35 Total: -75.93 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -0.18 Total: -67.92 kcal Atomic # 8 Polarization: -64.80 SS G_CDS: -2.45 Total: -67.25 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 75.05 SS G_CDS: -0.76 Total: 74.29 kcal Total: -80.72 0.58 -80.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042197606.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.536 kcal (2) G-P(sol) polarization free energy of solvation -80.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds