Wall clock time and date at job start Mon Mar 30 2020 02:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47279 * 2 1 4 4 C 1.52995 * 109.47361 * 184.81868 * 3 2 1 5 5 H 1.08998 * 109.47010 * 304.83585 * 4 3 2 6 6 C 1.50706 * 109.47186 * 64.83131 * 4 3 2 7 7 H 1.08000 * 119.99787 * 64.71365 * 6 4 3 8 8 C 1.37866 * 120.00126 * 244.71910 * 6 4 3 9 9 N 1.31524 * 120.00232 * 184.56546 * 8 6 4 10 10 Si 1.86805 * 120.00137 * 4.56236 * 8 6 4 11 11 H 1.48504 * 109.46944 * 84.76243 * 10 8 6 12 12 H 1.48498 * 109.47457 * 204.76155 * 10 8 6 13 13 H 1.48496 * 109.47211 * 324.76630 * 10 8 6 14 14 C 1.53003 * 109.47413 * 184.83015 * 4 3 2 15 15 C 1.52995 * 109.47100 * 180.02562 * 14 4 3 16 16 C 1.52997 * 109.46902 * 180.02562 * 15 14 4 17 17 C 1.53008 * 109.47382 * 60.00043 * 16 15 14 18 18 C 1.53003 * 109.46620 * 299.99782 * 17 16 15 19 19 C 1.52997 * 109.47065 * 60.00023 * 18 17 16 20 20 H 1.08999 * 109.47459 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47297 * 299.99905 * 1 2 3 22 22 H 1.08999 * 109.47415 * 60.00475 * 1 2 3 23 23 H 1.09000 * 109.47027 * 239.99708 * 2 1 3 24 24 H 1.09002 * 109.46955 * 120.00119 * 2 1 3 25 25 H 1.09002 * 109.47216 * 64.81881 * 3 2 1 26 26 H 1.08999 * 109.47051 * 304.82251 * 3 2 1 27 27 H 0.97002 * 119.99843 * 180.02562 * 9 8 6 28 28 H 1.08999 * 109.47043 * 299.99992 * 14 4 3 29 29 H 1.08999 * 109.46987 * 299.99808 * 15 14 4 30 30 H 1.08994 * 109.47766 * 60.00130 * 15 14 4 31 31 H 1.08998 * 109.47401 * 299.99871 * 16 15 14 32 32 H 1.09001 * 109.47348 * 180.02562 * 16 15 14 33 33 H 1.08997 * 109.46817 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.46992 * 59.99579 * 17 16 15 35 35 H 1.08999 * 109.47271 * 300.00182 * 18 17 16 36 36 H 1.09003 * 109.46746 * 179.97438 * 18 17 16 37 37 H 1.09001 * 109.47348 * 179.97438 * 19 18 17 38 38 H 1.09008 * 109.46856 * 59.99731 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5651 1.4442 -0.1212 5 1 3.9935 0.8342 0.6741 6 6 3.9634 0.8767 -1.4593 7 1 3.6934 1.3949 -2.3676 8 6 4.6724 -0.3039 -1.5240 9 7 5.0977 -0.7529 -2.6848 10 14 5.0290 -1.2661 0.0370 11 1 3.8706 -2.1389 0.3560 12 1 6.2392 -2.1031 -0.1629 13 1 5.2605 -0.3211 1.1589 14 6 4.0848 2.8781 -0.0003 15 6 5.6099 2.8799 -0.1221 16 6 6.1296 4.3137 -0.0006 17 6 5.7258 4.8891 1.3585 18 6 4.2007 4.8874 1.4802 19 6 3.6810 3.4535 1.3587 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.7489 1.9308 0.9300 26 1 1.6078 1.9806 -0.8436 27 1 5.5962 -1.5838 -2.7303 28 1 3.6565 3.4881 -0.7956 29 1 6.0386 2.2698 0.6730 30 1 5.8977 2.4696 -1.0900 31 1 5.7009 4.9242 -0.7954 32 1 7.2161 4.3151 -0.0878 33 1 6.0957 5.9108 1.4448 34 1 6.1545 4.2787 2.1533 35 1 3.7720 5.4978 0.6853 36 1 3.9130 5.2969 2.4486 37 1 2.5945 3.4522 1.4458 38 1 4.1097 2.8431 2.1536 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203760010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:02 Heat of formation + Delta-G solvation = -52.995772 kcal Electronic energy + Delta-G solvation = -14884.670191 eV Core-core repulsion = 12724.911019 eV Total energy + Delta-G solvation = -2159.759173 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.32377 -35.15378 -32.36235 -31.25614 -30.13181 -27.73757 -25.09421 -22.65734 -21.79989 -20.50149 -19.23555 -18.82368 -16.89583 -14.91081 -14.34753 -14.03078 -13.71793 -13.59744 -13.26587 -12.85340 -12.34439 -12.20585 -12.03606 -11.74127 -11.56698 -11.17149 -10.87328 -10.70507 -10.53924 -10.50546 -10.13348 -10.00260 -9.90955 -9.62268 -9.51417 -9.06494 -8.91052 -8.69449 -8.37565 -5.99996 -3.95176 3.32358 3.40858 3.41518 4.48100 5.21394 5.28127 5.33294 5.39472 5.70032 5.80356 5.84096 5.92222 6.01680 6.07237 6.09431 6.13644 6.21441 6.26548 6.34633 6.46183 6.51343 6.57783 6.64716 6.67045 6.75705 6.77420 6.86718 6.93935 7.18578 7.23716 7.29053 7.34466 7.53368 7.58418 7.90535 8.63286 9.06624 9.64909 11.13851 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.023912 B = 0.012998 C = 0.009759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.675208 B = 2153.675296 C = 2868.463025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.104 4.104 4 C 0.005 3.995 5 H 0.038 0.962 6 C -0.491 4.491 7 H 0.070 0.930 8 C 0.072 3.928 9 N -0.906 5.906 10 Si 0.867 3.133 11 H -0.275 1.275 12 H -0.294 1.294 13 H -0.263 1.263 14 C -0.069 4.069 15 C -0.104 4.104 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.120 4.120 20 H 0.042 0.958 21 H 0.042 0.958 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.042 0.958 25 H 0.033 0.967 26 H 0.048 0.952 27 H 0.261 0.739 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 7.029 7.827 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.142 4.142 4 C -0.014 4.014 5 H 0.056 0.944 6 C -0.529 4.529 7 H 0.088 0.912 8 C -0.129 4.129 9 N -0.545 5.545 10 Si 0.696 3.304 11 H -0.201 1.201 12 H -0.221 1.221 13 H -0.189 1.189 14 C -0.088 4.088 15 C -0.142 4.142 16 C -0.157 4.157 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.158 4.158 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.097 0.903 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.362 6.872 7.731 10.610 hybrid contribution 0.260 -0.671 0.783 1.064 sum -2.102 6.200 8.514 10.740 Atomic orbital electron populations 1.21787 0.97713 1.00252 1.00711 1.21517 0.93585 0.98660 1.02208 1.21715 0.98853 0.95016 0.98623 1.19441 0.91488 0.92657 0.97800 0.94428 1.20921 1.33624 1.06520 0.91833 0.91177 1.25027 0.95263 0.97303 0.95257 1.69912 1.38412 1.22022 1.24147 0.87064 0.77874 0.80320 0.85179 1.20090 1.22109 1.18882 1.21147 0.95017 0.98352 0.94273 1.21467 0.95991 0.93918 1.02802 1.21590 0.99518 0.98188 0.96445 1.21525 0.96148 0.99576 0.98184 1.21531 0.95684 0.97910 1.00311 1.21758 0.99970 0.94877 0.99152 0.93902 0.93899 0.93155 0.90278 0.93950 0.94839 0.93299 0.92926 0.92593 0.93583 0.90195 0.92565 0.93108 0.93227 0.92601 0.92493 0.93277 0.92383 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 37.16 0.37 -2.06 16 2 C -0.12 -2.46 5.36 -26.74 -0.14 -2.60 16 3 C -0.10 -2.11 4.45 -26.74 -0.12 -2.23 16 4 C 0.00 0.11 1.32 -91.77 -0.12 -0.01 16 5 H 0.04 0.89 4.47 -51.93 -0.23 0.66 16 6 C -0.49 -13.12 6.50 -34.44 -0.22 -13.34 16 7 H 0.07 2.08 8.06 -52.49 -0.42 1.65 16 8 C 0.07 2.01 5.41 -17.82 -0.10 1.92 16 9 N -0.91 -27.27 13.96 55.43 0.77 -26.50 16 10 Si 0.87 21.52 26.92 -169.99 -4.58 16.95 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.26 -6.31 6.21 56.52 0.35 -5.95 16 14 C -0.07 -1.38 1.77 -90.62 -0.16 -1.54 16 15 C -0.10 -2.07 4.96 -26.73 -0.13 -2.21 16 16 C -0.12 -1.95 5.92 -26.73 -0.16 -2.11 16 17 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 18 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 19 C -0.12 -2.03 4.86 -26.73 -0.13 -2.16 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.08 1.82 7.18 -51.93 -0.37 1.45 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.03 0.61 6.18 -51.93 -0.32 0.29 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.81 7.22 -51.93 -0.37 1.44 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.94 6.32 -51.93 -0.33 0.61 16 38 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 285.34 15.07 4.30 4.30 Total: -1.00 -27.87 285.34 -7.89 -35.76 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.16 Total: -0.48 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: -1.23 Total: -30.03 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.50 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.58 Total: 16.95 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.87 -7.89 -35.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203760010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.231 kcal (2) G-P(sol) polarization free energy of solvation -27.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds