Wall clock time and date at job start Mon Mar 30 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21289 * 120.00279 * 2 1 4 4 N 1.34781 * 120.00315 * 180.02562 * 2 1 3 5 5 C 1.38251 * 120.00447 * 180.02562 * 4 2 1 6 6 S 1.75665 * 125.20440 * 359.95933 * 5 4 2 7 7 C 1.75479 * 92.07162 * 180.02562 * 6 5 4 8 8 C 1.32369 * 111.31604 * 359.71362 * 7 6 5 9 9 C 1.38804 * 125.20917 * 179.97438 * 5 4 2 10 10 C 1.40918 * 123.68734 * 359.97203 * 9 5 4 11 11 H 1.08004 * 119.99956 * 22.95991 * 10 9 5 12 12 C 1.39570 * 120.00331 * 202.96829 * 10 9 5 13 13 N 1.31186 * 119.99904 * 197.46157 * 12 10 9 14 14 Si 1.86795 * 119.99893 * 17.45572 * 12 10 9 15 15 H 1.48504 * 109.47312 * 263.94963 * 14 12 10 16 16 H 1.48504 * 109.47060 * 23.95165 * 14 12 10 17 17 H 1.48501 * 109.47162 * 143.94742 * 14 12 10 18 18 H 1.09001 * 109.47075 * 239.99549 * 1 2 3 19 19 H 1.09001 * 109.47213 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.46902 * 119.99603 * 1 2 3 21 21 H 0.97007 * 119.99370 * 359.97438 * 4 2 1 22 22 H 1.08009 * 124.34212 * 179.97438 * 7 6 5 23 23 H 1.07998 * 122.80269 * 180.25262 * 8 7 6 24 24 H 0.96997 * 120.00454 * 353.53550 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5635 -1.1672 0.0000 6 16 4.5762 0.2681 0.0003 7 6 6.0456 -0.6911 0.0002 8 6 5.7746 -1.9867 0.0060 9 6 4.3637 -2.3014 0.0001 10 6 3.8563 -3.6160 0.0002 11 1 2.8584 -3.8097 -0.3647 12 6 4.6432 -4.6678 0.4719 13 7 4.3337 -5.9059 0.1682 14 14 6.1372 -4.3124 1.5353 15 1 7.3542 -4.2814 0.6849 16 1 5.9671 -2.9976 2.2044 17 1 6.2780 -5.3758 2.5623 18 1 -0.3633 -0.5139 0.8900 19 1 -0.3634 1.0277 -0.0005 20 1 -0.3633 -0.5138 -0.8901 21 1 1.6959 -2.0073 -0.0005 22 1 7.0433 -0.2773 -0.0001 23 1 6.5433 -2.7452 0.0110 24 1 3.5083 -6.0978 -0.3038 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238107049.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:57 Heat of formation + Delta-G solvation = -20.247773 kcal Electronic energy + Delta-G solvation = -11652.931060 eV Core-core repulsion = 9464.419623 eV Total energy + Delta-G solvation = -2188.511437 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.10371 -36.57623 -33.67355 -32.99484 -29.93238 -28.08233 -24.92894 -21.45443 -20.31167 -19.62663 -17.81356 -16.70612 -15.48372 -14.86257 -14.69635 -14.30196 -13.39317 -13.27963 -12.72938 -12.36051 -12.34136 -11.71484 -11.58836 -11.05958 -10.70353 -10.13379 -10.03102 -9.64864 -9.49848 -9.07019 -8.84722 -7.46664 -7.11191 -6.93090 -4.32932 2.16788 2.90161 3.11091 3.19555 3.30441 3.42397 3.51371 3.89879 4.01709 4.03308 5.13541 5.26194 5.52327 5.56748 5.96694 6.02668 6.29132 6.98193 7.00974 7.29011 7.48082 7.58181 8.10485 8.21893 8.40966 8.77611 8.87546 10.06960 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.037186 B = 0.012534 C = 0.009832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.794441 B = 2233.453662 C = 2847.137489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.475 3.525 3 O -0.546 6.546 4 N -0.593 5.593 5 C -0.158 4.158 6 S 0.111 5.889 7 C -0.251 4.251 8 C -0.152 4.152 9 C 0.049 3.951 10 C -0.501 4.501 11 H 0.071 0.929 12 C 0.042 3.958 13 N -0.828 5.828 14 Si 1.069 2.931 15 H -0.278 1.278 16 H -0.260 1.260 17 H -0.289 1.289 18 H 0.083 0.917 19 H 0.088 0.912 20 H 0.082 0.918 21 H 0.407 0.593 22 H 0.141 0.859 23 H 0.121 0.879 24 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 5.123 0.817 5.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.262 3.738 3 O -0.427 6.427 4 N -0.235 5.235 5 C -0.368 4.368 6 S 0.368 5.632 7 C -0.386 4.386 8 C -0.186 4.186 9 C 0.037 3.963 10 C -0.535 4.535 11 H 0.089 0.911 12 C -0.176 4.176 13 N -0.453 5.453 14 Si 0.896 3.104 15 H -0.206 1.206 16 H -0.185 1.185 17 H -0.217 1.217 18 H 0.102 0.898 19 H 0.107 0.893 20 H 0.101 0.899 21 H 0.243 0.757 22 H 0.159 0.841 23 H 0.138 0.862 24 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.544 6.606 1.526 6.954 hybrid contribution -1.371 -1.529 -0.953 2.264 sum -2.915 5.078 0.573 5.883 Atomic orbital electron populations 1.21783 0.91930 1.04873 1.03794 1.20750 0.90541 0.83626 0.78862 1.90570 1.69501 1.30916 1.51692 1.41966 1.04081 1.08595 1.68858 1.21219 0.85632 0.95984 1.33958 1.83925 0.93065 1.06718 1.79493 1.25350 1.02847 0.98624 1.11828 1.20979 0.96167 0.95480 1.05978 1.17724 0.89229 0.92574 0.96773 1.19793 1.03037 0.91184 1.39437 0.91071 1.27060 1.03190 0.92126 0.95179 1.70678 1.22845 1.21176 1.30600 0.83710 0.73833 0.76478 0.76352 1.20564 1.18507 1.21667 0.89819 0.89300 0.89911 0.75710 0.84107 0.86207 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 10.32 36.00 0.37 -1.73 14 2 C 0.47 9.09 7.90 -10.98 -0.09 9.00 14 3 O -0.55 -12.36 14.56 5.55 0.08 -12.28 14 4 N -0.59 -12.35 5.36 -10.09 -0.05 -12.40 14 5 C -0.16 -3.82 7.21 -14.45 -0.10 -3.93 14 6 S 0.11 2.51 20.31 -107.50 -2.18 0.33 14 7 C -0.25 -5.43 11.05 28.81 0.32 -5.11 14 8 C -0.15 -3.59 7.44 -39.02 -0.29 -3.88 14 9 C 0.05 1.25 5.32 -106.19 -0.56 0.69 14 10 C -0.50 -13.05 9.26 -38.07 -0.35 -13.40 14 11 H 0.07 1.86 7.42 -52.48 -0.39 1.47 14 12 C 0.04 1.09 5.48 -17.33 -0.09 1.00 14 13 N -0.83 -21.95 13.67 55.53 0.76 -21.19 14 14 Si 1.07 23.77 24.83 -169.99 -4.22 19.55 14 15 H -0.28 -5.85 6.73 56.52 0.38 -5.47 14 16 H -0.26 -5.78 6.51 56.52 0.37 -5.41 14 17 H -0.29 -6.29 7.11 56.52 0.40 -5.88 14 18 H 0.08 0.91 8.14 -51.93 -0.42 0.49 14 19 H 0.09 1.06 8.12 -51.93 -0.42 0.64 14 20 H 0.08 0.90 8.14 -51.93 -0.42 0.47 14 21 H 0.41 7.63 7.80 -40.82 -0.32 7.31 14 22 H 0.14 2.54 8.06 -52.48 -0.42 2.12 14 23 H 0.12 2.71 4.33 -52.49 -0.23 2.48 14 24 H 0.28 7.28 8.73 -40.82 -0.36 6.93 14 LS Contribution 223.80 15.07 3.37 3.37 Total: -1.00 -29.96 223.80 -4.88 -34.84 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -1.83 Total: 5.14 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -0.80 Total: -17.36 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.71 Total: -33.59 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.08 Total: -12.28 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -4.22 Total: 19.55 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.18 Total: 0.33 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -29.96 -4.88 -34.84 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238107049.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.596 kcal (2) G-P(sol) polarization free energy of solvation -29.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds