Wall clock time and date at job start Mon Mar 30 2020 02:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37153 * 122.79434 * 2 1 4 4 C 1.34647 * 115.16012 * 179.76748 * 3 2 1 5 5 S 1.75811 * 109.97859 * 0.47826 * 4 3 2 6 6 C 1.37128 * 122.79501 * 180.29343 * 2 1 3 7 7 N 1.37534 * 125.33291 * 359.97438 * 6 2 1 8 8 C 1.34778 * 120.00448 * 180.02562 * 7 6 2 9 9 O 1.21999 * 119.99646 * 359.97438 * 8 7 6 10 10 C 1.40396 * 120.00237 * 180.02562 * 8 7 6 11 11 H 1.08001 * 120.00261 * 353.69670 * 10 8 7 12 12 C 1.40099 * 119.99991 * 173.70390 * 10 8 7 13 13 N 1.30660 * 120.00129 * 6.28432 * 12 10 8 14 14 Si 1.86801 * 119.99880 * 186.28824 * 12 10 8 15 15 H 1.48500 * 109.47276 * 94.98243 * 14 12 10 16 16 H 1.48498 * 109.46901 * 214.98010 * 14 12 10 17 17 H 1.48490 * 109.47372 * 334.98218 * 14 12 10 18 18 H 1.08996 * 109.47458 * 269.71054 * 1 2 3 19 19 H 1.09005 * 109.47071 * 29.70686 * 1 2 3 20 20 H 1.08996 * 109.47299 * 149.70642 * 1 2 3 21 21 H 1.08007 * 122.42083 * 359.97438 * 3 2 1 22 22 H 1.08006 * 125.01312 * 180.24053 * 4 3 2 23 23 H 0.97001 * 120.00250 * 0.02562 * 7 6 2 24 24 H 0.97000 * 120.00251 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2499 1.1529 0.0000 4 6 3.5844 0.9741 0.0049 5 16 3.9603 -0.7434 -0.0038 6 6 2.2498 -1.1527 -0.0059 7 7 1.7374 -2.4290 -0.0119 8 6 2.5695 -3.4893 -0.0169 9 8 3.7772 -3.3168 -0.0165 10 6 2.0464 -4.7922 -0.0236 11 1 0.9824 -4.9475 0.0779 12 6 2.9046 -5.8908 -0.1618 13 7 4.1991 -5.7129 -0.1610 14 14 2.1983 -7.6102 -0.3473 15 1 2.1029 -7.9533 -1.7890 16 1 3.0850 -8.5859 0.3360 17 1 0.8457 -7.6582 0.2635 18 1 -0.3634 -0.0052 1.0276 19 1 -0.3633 0.8926 -0.5093 20 1 -0.3634 -0.8873 -0.5184 21 1 1.7971 2.1335 -0.0004 22 1 4.3161 1.7685 0.0094 23 1 0.7772 -2.5662 -0.0126 24 1 4.7933 -6.4736 -0.2571 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258663234.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:35 Heat of formation + Delta-G solvation = -17.184146 kcal Electronic energy + Delta-G solvation = -11552.485738 eV Core-core repulsion = 9364.107150 eV Total energy + Delta-G solvation = -2188.378588 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.53797 -36.77465 -33.46409 -32.48897 -29.62842 -27.60908 -25.29079 -22.21859 -20.60355 -18.96311 -17.13175 -16.42484 -15.52522 -14.76320 -14.11134 -13.88984 -13.60708 -12.79087 -12.75543 -12.26778 -11.54986 -11.43017 -11.34547 -11.09679 -10.96280 -10.80164 -10.43400 -9.79535 -9.61595 -9.04605 -7.90658 -7.49111 -6.67658 -6.55585 -5.08226 1.95852 2.43257 2.96918 3.05104 3.08970 3.15422 3.44671 3.87272 4.26442 4.63938 5.52415 5.62234 5.89033 5.98307 6.09124 6.12022 6.41598 6.70777 7.07545 7.17347 7.22946 7.66758 7.80464 7.93389 8.62231 9.01960 10.15511 10.34777 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.057173 B = 0.009173 C = 0.007945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.627650 B = 3051.710492 C = 3523.233027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.247 4.247 3 C -0.091 4.091 4 C -0.342 4.342 5 S 0.226 5.774 6 C 0.100 3.900 7 N -0.651 5.651 8 C 0.526 3.474 9 O -0.552 6.552 10 C -0.529 4.529 11 H 0.074 0.926 12 C 0.087 3.913 13 N -0.737 5.737 14 Si 0.917 3.083 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.261 1.261 18 H 0.051 0.949 19 H 0.055 0.945 20 H 0.050 0.950 21 H 0.117 0.883 22 H 0.144 0.856 23 H 0.399 0.601 24 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.690 5.321 -0.119 7.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.262 4.262 3 C -0.122 4.122 4 C -0.478 4.478 5 S 0.483 5.517 6 C -0.122 4.122 7 N -0.291 5.291 8 C 0.337 3.663 9 O -0.437 6.437 10 C -0.564 4.564 11 H 0.092 0.908 12 C -0.138 4.138 13 N -0.363 5.363 14 Si 0.741 3.259 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.185 1.185 18 H 0.070 0.930 19 H 0.074 0.926 20 H 0.069 0.931 21 H 0.135 0.865 22 H 0.162 0.838 23 H 0.234 0.766 24 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.319 4.387 -0.128 4.964 hybrid contribution -2.207 0.008 -0.098 2.210 sum -4.526 4.396 -0.226 6.313 Atomic orbital electron populations 1.20109 0.91079 1.01100 1.00592 1.18645 0.96091 0.90665 1.20784 1.19345 0.92700 0.97428 1.02685 1.26230 0.99374 1.03374 1.18854 1.85319 1.00478 0.94026 1.71831 1.22651 0.98470 0.89086 1.02007 1.43408 1.10671 1.02213 1.72843 1.16988 0.85953 0.84144 0.79169 1.90638 1.13980 1.83138 1.55957 1.19715 0.95424 0.89835 1.51390 0.90772 1.25792 0.94342 1.01195 0.92458 1.70012 1.03326 1.32493 1.30512 0.86180 0.79853 0.80650 0.79204 1.19389 1.20025 1.18531 0.92985 0.92622 0.93081 0.86507 0.83822 0.76594 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 9.90 36.01 0.36 -0.71 14 2 C -0.25 -4.72 5.89 -105.42 -0.62 -5.34 14 3 C -0.09 -1.63 9.96 -41.25 -0.41 -2.04 14 4 C -0.34 -6.31 11.25 29.46 0.33 -5.98 14 5 S 0.23 4.96 20.38 -107.50 -2.19 2.77 14 6 C 0.10 2.22 7.15 -15.40 -0.11 2.11 14 7 N -0.65 -14.99 5.31 -13.48 -0.07 -15.06 14 8 C 0.53 14.40 7.47 -15.45 -0.12 14.28 14 9 O -0.55 -16.65 12.34 4.92 0.06 -16.59 14 10 C -0.53 -14.01 9.23 -38.07 -0.35 -14.36 14 11 H 0.07 1.78 7.86 -52.49 -0.41 1.36 14 12 C 0.09 2.25 5.49 -17.35 -0.10 2.16 14 13 N -0.74 -20.54 11.73 55.55 0.65 -19.88 14 14 Si 0.92 18.70 29.56 -169.99 -5.03 13.68 14 15 H -0.27 -5.39 7.11 56.52 0.40 -4.99 14 16 H -0.28 -5.49 7.11 56.52 0.40 -5.09 14 17 H -0.26 -5.16 7.11 56.52 0.40 -4.76 14 18 H 0.05 0.74 8.14 -51.93 -0.42 0.32 14 19 H 0.05 0.74 8.13 -51.93 -0.42 0.32 14 20 H 0.05 0.75 7.19 -51.93 -0.37 0.38 14 21 H 0.12 1.76 8.06 -52.48 -0.42 1.34 14 22 H 0.14 2.26 8.06 -52.48 -0.42 1.84 14 23 H 0.40 7.91 7.50 -40.82 -0.31 7.61 14 24 H 0.28 6.91 8.29 -40.82 -0.34 6.57 14 LS Contribution 230.20 15.07 3.47 3.47 Total: -1.00 -30.55 230.20 -6.04 -36.59 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -1.92 Total: 4.91 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.02 Total: -9.88 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.58 Total: -34.95 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.06 Total: -16.59 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -2.19 Total: 2.77 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.55 -6.04 -36.59 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258663234.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.408 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds