Wall clock time and date at job start Mon Mar 30 2020 02:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37153 * 122.79434 * 2 1 4 4 C 1.34647 * 115.16012 * 179.76748 * 3 2 1 5 5 S 1.75811 * 109.97859 * 0.47826 * 4 3 2 6 6 C 1.37128 * 122.79501 * 180.29343 * 2 1 3 7 7 N 1.37534 * 125.33291 * 359.97438 * 6 2 1 8 8 C 1.34778 * 120.00448 * 180.02562 * 7 6 2 9 9 O 1.21999 * 119.99646 * 359.97438 * 8 7 6 10 10 C 1.40396 * 120.00237 * 180.02562 * 8 7 6 11 11 H 1.08001 * 120.00261 * 353.69670 * 10 8 7 12 12 C 1.40099 * 119.99991 * 173.70390 * 10 8 7 13 13 N 1.30660 * 120.00129 * 6.28432 * 12 10 8 14 14 Si 1.86801 * 119.99880 * 186.28824 * 12 10 8 15 15 H 1.48500 * 109.47276 * 94.98243 * 14 12 10 16 16 H 1.48498 * 109.46901 * 214.98010 * 14 12 10 17 17 H 1.48490 * 109.47372 * 334.98218 * 14 12 10 18 18 H 1.08996 * 109.47458 * 269.71054 * 1 2 3 19 19 H 1.09005 * 109.47071 * 29.70686 * 1 2 3 20 20 H 1.08996 * 109.47299 * 149.70642 * 1 2 3 21 21 H 1.08007 * 122.42083 * 359.97438 * 3 2 1 22 22 H 1.08006 * 125.01312 * 180.24053 * 4 3 2 23 23 H 0.97001 * 120.00250 * 0.02562 * 7 6 2 24 24 H 0.97000 * 120.00251 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2499 1.1529 0.0000 4 6 3.5844 0.9741 0.0049 5 16 3.9603 -0.7434 -0.0038 6 6 2.2498 -1.1527 -0.0059 7 7 1.7374 -2.4290 -0.0119 8 6 2.5695 -3.4893 -0.0169 9 8 3.7772 -3.3168 -0.0165 10 6 2.0464 -4.7922 -0.0236 11 1 0.9824 -4.9475 0.0779 12 6 2.9046 -5.8908 -0.1618 13 7 4.1991 -5.7129 -0.1610 14 14 2.1983 -7.6102 -0.3473 15 1 2.1029 -7.9533 -1.7890 16 1 3.0850 -8.5859 0.3360 17 1 0.8457 -7.6582 0.2635 18 1 -0.3634 -0.0052 1.0276 19 1 -0.3633 0.8926 -0.5093 20 1 -0.3634 -0.8873 -0.5184 21 1 1.7971 2.1335 -0.0004 22 1 4.3161 1.7685 0.0094 23 1 0.7772 -2.5662 -0.0126 24 1 4.7933 -6.4736 -0.2571 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258663234.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:34 Heat of formation + Delta-G solvation = -37.896219 kcal Electronic energy + Delta-G solvation = -11553.383881 eV Core-core repulsion = 9364.107150 eV Total energy + Delta-G solvation = -2189.276731 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.34894 -38.44649 -35.30467 -34.45623 -31.05436 -29.46736 -26.94555 -23.76475 -22.44752 -20.66840 -18.89339 -18.23793 -17.32128 -16.36235 -15.88344 -15.61085 -15.17029 -14.53442 -14.30705 -13.64771 -13.34025 -12.99788 -12.78997 -12.74938 -12.65526 -12.38116 -12.02307 -11.41397 -11.35103 -10.97386 -9.90749 -9.14995 -8.48812 -8.35518 -7.10367 0.35079 0.81615 1.37491 1.38774 1.56159 1.60430 1.93895 2.17414 2.37504 2.91877 3.52596 4.29070 4.50154 4.62633 4.81565 4.93045 5.13806 5.17597 5.29107 5.63378 5.74409 5.80491 6.02758 6.13875 6.63448 7.17698 8.20643 8.43475 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.057173 B = 0.009173 C = 0.007945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.627650 B = 3051.710492 C = 3523.233027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.222 4.222 3 C -0.097 4.097 4 C -0.314 4.314 5 S 0.141 5.859 6 C 0.055 3.945 7 N -0.649 5.649 8 C 0.510 3.490 9 O -0.594 6.594 10 C -0.555 4.555 11 H 0.094 0.906 12 C 0.033 3.967 13 N -0.790 5.790 14 Si 1.005 2.995 15 H -0.261 1.261 16 H -0.269 1.269 17 H -0.246 1.246 18 H 0.067 0.933 19 H 0.084 0.916 20 H 0.053 0.947 21 H 0.160 0.840 22 H 0.175 0.825 23 H 0.411 0.589 24 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 6.189 -0.207 9.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.238 4.238 3 C -0.127 4.127 4 C -0.450 4.450 5 S 0.399 5.601 6 C -0.164 4.164 7 N -0.291 5.291 8 C 0.321 3.679 9 O -0.483 6.483 10 C -0.590 4.590 11 H 0.112 0.888 12 C -0.187 4.187 13 N -0.417 5.417 14 Si 0.823 3.177 15 H -0.186 1.186 16 H -0.194 1.194 17 H -0.169 1.169 18 H 0.085 0.915 19 H 0.102 0.898 20 H 0.072 0.928 21 H 0.177 0.823 22 H 0.193 0.807 23 H 0.248 0.752 24 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.511 5.302 -0.212 6.965 hybrid contribution -1.560 -0.006 -0.058 1.562 sum -6.072 5.296 -0.270 8.061 Atomic orbital electron populations 1.20258 0.88106 1.02712 1.02045 1.19285 0.98220 0.89799 1.16487 1.19829 0.92335 0.98817 1.01699 1.26461 1.00558 1.01061 1.16930 1.85532 1.03087 0.98051 1.73386 1.22862 0.97981 0.89584 1.05987 1.42913 1.10720 1.02006 1.73481 1.17359 0.85953 0.85549 0.78995 1.90613 1.15684 1.84384 1.57589 1.20243 0.96669 0.90244 1.51795 0.88800 1.27051 0.94406 1.06162 0.91080 1.70153 1.05321 1.34403 1.31856 0.84890 0.79433 0.73899 0.79459 1.18595 1.19388 1.16932 0.91451 0.89758 0.92807 0.82297 0.80749 0.75164 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.95 9.90 71.24 0.70 -1.24 14 2 C -0.22 -7.95 5.89 -20.38 -0.12 -8.07 14 3 C -0.10 -3.12 9.96 21.19 0.21 -2.91 14 4 C -0.31 -10.89 11.25 67.00 0.75 -10.14 14 5 S 0.14 6.37 20.38 -56.49 -1.15 5.22 14 6 C 0.06 2.46 7.15 83.54 0.60 3.06 14 7 N -0.65 -30.42 5.31 -314.66 -1.67 -32.09 14 8 C 0.51 28.95 7.47 84.77 0.63 29.58 14 9 O -0.59 -37.80 12.34 -5.31 -0.07 -37.86 14 10 C -0.56 -29.93 9.23 23.25 0.21 -29.72 14 11 H 0.09 4.48 7.86 -2.91 -0.02 4.45 14 12 C 0.03 1.73 5.49 85.32 0.47 2.20 14 13 N -0.79 -45.61 11.73 21.85 0.26 -45.35 14 14 Si 1.00 38.23 29.56 68.60 2.03 40.25 14 15 H -0.26 -9.55 7.11 99.48 0.71 -8.85 14 16 H -0.27 -9.87 7.11 99.48 0.71 -9.16 14 17 H -0.25 -8.67 7.11 99.48 0.71 -7.96 14 18 H 0.07 1.66 8.14 -2.39 -0.02 1.64 14 19 H 0.08 1.82 8.13 -2.38 -0.02 1.80 14 20 H 0.05 1.43 7.19 -2.39 -0.02 1.41 14 21 H 0.16 3.87 8.06 -2.91 -0.02 3.85 14 22 H 0.18 4.92 8.06 -2.91 -0.02 4.89 14 23 H 0.41 16.32 7.50 -92.71 -0.70 15.62 14 24 H 0.28 14.63 8.29 -92.71 -0.77 13.86 14 Total: -1.00 -68.89 230.20 3.39 -65.50 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.53 Total: 21.57 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 3.46 Total: -17.25 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -1.41 Total: -77.44 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.07 Total: -37.86 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.25 kcal Atomic # 16 Polarization: 6.37 SS G_CDS: -1.15 Total: 5.22 kcal Total: -68.89 3.39 -65.50 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258663234.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.606 kcal (2) G-P(sol) polarization free energy of solvation -68.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds