Wall clock time and date at job start Mon Mar 30 2020 02:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46597 * 111.00049 * 2 1 4 4 C 1.53697 * 111.02834 * 180.12093 * 3 2 1 5 5 N 1.45386 * 108.06021 * 55.88622 * 4 3 2 6 6 C 1.46941 * 117.72932 * 179.97438 * 5 4 3 7 7 C 1.55270 * 103.40179 * 163.01693 * 6 5 4 8 8 C 1.55064 * 104.91449 * 335.92368 * 7 6 5 9 9 H 1.08998 * 110.62333 * 238.50188 * 8 7 6 10 10 C 1.50696 * 110.51254 * 115.85664 * 8 7 6 11 11 H 1.08005 * 119.99625 * 310.49026 * 10 8 7 12 12 C 1.37871 * 120.00268 * 130.48290 * 10 8 7 13 13 N 1.31522 * 120.00287 * 180.02562 * 12 10 8 14 14 Si 1.86806 * 120.00016 * 0.02562 * 12 10 8 15 15 H 1.48498 * 109.46920 * 269.99821 * 14 12 10 16 16 H 1.48495 * 109.46930 * 30.00055 * 14 12 10 17 17 H 1.48498 * 109.46948 * 149.99933 * 14 12 10 18 18 C 1.48869 * 109.02500 * 297.43382 * 5 4 3 19 19 H 1.08993 * 110.31205 * 306.94819 * 18 5 4 20 20 C 1.47584 * 111.00022 * 233.82820 * 2 1 3 21 21 H 1.08998 * 109.47277 * 186.17348 * 1 2 3 22 22 H 1.08996 * 109.46899 * 306.17072 * 1 2 3 23 23 H 1.08994 * 109.46796 * 66.17167 * 1 2 3 24 24 H 1.08998 * 109.16063 * 300.51590 * 3 2 1 25 25 H 1.08993 * 109.16880 * 59.72143 * 3 2 1 26 26 H 1.09003 * 109.84943 * 175.71776 * 4 3 2 27 27 H 1.08999 * 109.85560 * 296.71379 * 4 3 2 28 28 H 1.09001 * 110.62947 * 281.49110 * 6 5 4 29 29 H 1.08999 * 110.63855 * 44.37255 * 6 5 4 30 30 H 1.09007 * 110.35439 * 217.06431 * 7 6 5 31 31 H 1.08997 * 110.35507 * 94.78243 * 7 6 5 32 32 H 0.96994 * 120.00202 * 180.02562 * 13 12 10 33 33 H 1.08995 * 109.86858 * 63.13002 * 20 2 1 34 34 H 1.09003 * 109.92464 * 302.11767 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9944 1.3686 0.0000 4 6 3.5314 1.3693 -0.0030 5 7 3.9802 0.5952 -1.1489 6 6 5.4284 0.4582 -1.3565 7 6 5.5394 -0.7390 -2.3391 8 6 4.2365 -1.5524 -2.1259 9 1 4.4669 -2.5743 -1.8249 10 6 3.4005 -1.5485 -3.3797 11 1 3.1886 -0.6175 -3.8845 12 6 2.9064 -2.7334 -3.8825 13 7 2.1772 -2.7301 -4.9770 14 14 3.2726 -4.3436 -3.0091 15 1 4.5274 -4.9255 -3.5495 16 1 3.4298 -4.0927 -1.5539 17 1 2.1518 -5.2923 -3.2296 18 6 3.5152 -0.8108 -0.9969 19 1 3.8203 -1.2077 -0.0287 20 6 1.9979 -0.8132 -1.1122 21 1 -0.3634 -1.0217 0.1105 22 1 -0.3633 0.6065 0.8296 23 1 -0.3633 0.4152 -0.9400 24 1 1.6345 1.8899 -0.8870 25 1 1.6381 1.8887 0.8891 26 1 3.9009 2.3920 -0.0795 27 1 3.9036 0.9080 0.9117 28 1 5.8394 1.3626 -1.8050 29 1 5.9319 0.2343 -0.4160 30 1 6.4105 -1.3482 -2.0976 31 1 5.5991 -0.3814 -3.3670 32 1 1.8293 -3.5636 -5.3305 33 1 1.6982 -0.3772 -2.0651 34 1 1.6224 -1.8338 -1.0375 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259694525.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:44 Heat of formation + Delta-G solvation = -3.534323 kcal Electronic energy + Delta-G solvation = -14926.502921 eV Core-core repulsion = 12665.348215 eV Total energy + Delta-G solvation = -2261.154707 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88742 -37.39057 -35.05807 -33.29068 -31.13528 -29.79878 -27.39180 -25.62285 -24.22628 -22.70629 -21.27479 -20.48467 -18.86867 -17.04611 -16.30992 -16.11938 -15.78999 -15.74473 -15.46923 -14.87222 -14.62260 -13.88559 -13.77435 -13.39370 -12.97144 -12.90058 -12.76225 -12.47060 -12.09819 -11.94990 -11.74426 -11.66744 -11.46625 -11.18790 -10.82546 -10.61568 -9.28837 -9.10633 -8.20224 -6.19648 1.36283 1.38335 1.47856 2.39045 3.01548 3.13665 3.17822 3.89719 4.01014 4.20011 4.32419 4.39051 4.43760 4.50546 4.57323 4.63488 4.74281 4.76934 4.85139 4.93430 4.96646 4.97770 5.07891 5.17077 5.27090 5.34841 5.59112 5.74963 6.01118 6.10245 6.25127 6.50547 6.55950 6.85002 7.41943 8.97127 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.029214 B = 0.013771 C = 0.010807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.223548 B = 2032.760281 C = 2590.336502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.565 5.565 3 C 0.065 3.935 4 C 0.061 3.939 5 N -0.548 5.548 6 C 0.057 3.943 7 C -0.115 4.115 8 C 0.002 3.998 9 H 0.043 0.957 10 C -0.472 4.472 11 H 0.027 0.973 12 C 0.009 3.991 13 N -0.955 5.955 14 Si 0.935 3.065 15 H -0.268 1.268 16 H -0.246 1.246 17 H -0.291 1.291 18 C 0.080 3.920 19 H 0.037 0.963 20 C 0.100 3.900 21 H 0.065 0.935 22 H 0.091 0.909 23 H 0.013 0.987 24 H 0.020 0.980 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.038 0.962 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.262 0.738 33 H 0.022 0.978 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 5.368 12.392 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.290 5.290 3 C -0.063 4.063 4 C -0.068 4.068 5 N -0.274 5.274 6 C -0.070 4.070 7 C -0.154 4.154 8 C -0.018 4.018 9 H 0.061 0.939 10 C -0.511 4.511 11 H 0.046 0.954 12 C -0.186 4.186 13 N -0.596 5.596 14 Si 0.760 3.240 15 H -0.193 1.193 16 H -0.170 1.170 17 H -0.218 1.218 18 C -0.028 4.028 19 H 0.055 0.945 20 C -0.028 4.028 21 H 0.084 0.916 22 H 0.109 0.891 23 H 0.031 0.969 24 H 0.039 0.961 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.211 5.357 12.285 13.583 hybrid contribution -0.163 -0.817 -0.459 0.952 sum 2.048 4.539 11.826 12.832 Atomic orbital electron populations 1.22328 0.86454 1.02567 1.00453 1.61766 1.08556 1.13737 1.44938 1.22135 0.94639 0.88659 1.00843 1.22057 0.94713 0.98844 0.91158 1.63454 1.12283 1.11001 1.40656 1.22712 0.87439 0.98845 0.98034 1.22724 0.97539 0.96210 0.98907 1.19905 0.93476 0.95046 0.93327 0.93899 1.20892 1.29551 0.92858 1.07767 0.95447 1.25890 0.94890 1.02382 0.95471 1.70059 1.37749 1.27971 1.23797 0.85910 0.77996 0.79565 0.80543 1.19340 1.16982 1.21771 1.22406 0.94412 0.89206 0.96803 0.94513 1.21590 0.94444 0.96033 0.90693 0.91569 0.89076 0.96877 0.96148 0.87968 0.88741 0.94349 0.89955 0.93377 0.91061 0.92998 0.92907 0.95948 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.62 127.69 1.23 2.11 16 2 N -0.56 -19.70 4.88 -921.67 -4.49 -24.19 16 3 C 0.07 1.98 5.62 86.60 0.49 2.47 16 4 C 0.06 1.82 6.05 86.82 0.53 2.35 16 5 N -0.55 -20.67 4.84 -865.01 -4.19 -24.86 16 6 C 0.06 1.91 6.77 87.07 0.59 2.49 16 7 C -0.12 -4.53 6.70 32.08 0.21 -4.31 16 8 C 0.00 0.11 2.85 -10.79 -0.03 0.08 16 9 H 0.04 1.96 4.67 -2.39 -0.01 1.95 16 10 C -0.47 -26.59 6.86 25.60 0.18 -26.41 16 11 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 12 C 0.01 0.54 5.47 84.65 0.46 1.00 16 13 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 14 Si 0.93 44.00 27.23 68.60 1.87 45.87 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.25 -10.74 6.41 99.48 0.64 -10.10 16 17 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 18 C 0.08 3.37 2.45 44.30 0.11 3.48 16 19 H 0.04 1.49 8.03 -2.39 -0.02 1.47 16 20 C 0.10 4.34 4.50 85.90 0.39 4.73 16 21 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 22 H 0.09 2.08 8.11 -2.39 -0.02 2.06 16 23 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.04 1.11 8.04 -2.39 -0.02 1.09 16 28 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.05 2.23 7.73 -2.39 -0.02 2.21 16 32 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 33 H 0.02 1.15 7.16 -2.39 -0.02 1.13 16 34 H 0.05 2.43 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -65.13 261.80 -1.39 -66.52 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.98 Total: 8.15 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 4.15 Total: -12.02 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -8.38 Total: -108.52 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.87 Total: 45.87 kcal Total: -65.13 -1.39 -66.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694525.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.982 kcal (2) G-P(sol) polarization free energy of solvation -65.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds