Wall clock time and date at job start Mon Mar 30 2020 02:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47908 * 110.99610 * 2 1 4 4 C 1.53996 * 107.05912 * 145.84743 * 3 2 1 5 5 H 1.09004 * 110.30577 * 239.76056 * 4 3 2 6 6 C 1.50696 * 110.31152 * 117.68508 * 4 3 2 7 7 H 1.08001 * 120.00413 * 241.44890 * 6 4 3 8 8 C 1.37874 * 119.99831 * 61.73018 * 6 4 3 9 9 N 1.31522 * 119.99950 * 359.72247 * 8 6 4 10 10 Si 1.86799 * 120.00113 * 179.71979 * 8 6 4 11 11 H 1.48503 * 109.47192 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.46943 * 120.00112 * 10 8 6 13 13 H 1.48495 * 109.47594 * 239.99928 * 10 8 6 14 14 C 1.54592 * 105.13849 * 358.76879 * 4 3 2 15 15 H 1.09006 * 110.72333 * 96.40365 * 14 4 3 16 16 N 1.46904 * 110.72645 * 219.68808 * 14 4 3 17 17 C 1.48534 * 111.00303 * 117.38972 * 2 1 3 18 18 H 1.09003 * 110.66802 * 318.72206 * 17 2 1 19 19 C 1.53004 * 110.66238 * 81.67840 * 17 2 1 20 20 C 1.52993 * 117.49994 * 252.48879 * 19 17 2 21 21 C 1.52994 * 60.00347 * 252.51186 * 20 19 17 22 22 H 1.08997 * 109.47451 * 55.18209 * 1 2 3 23 23 H 1.08998 * 109.47277 * 175.18385 * 1 2 3 24 24 H 1.09002 * 109.47451 * 295.18169 * 1 2 3 25 25 H 1.08991 * 109.92226 * 26.48678 * 3 2 1 26 26 H 1.09007 * 109.91592 * 265.19369 * 3 2 1 27 27 H 0.97001 * 119.99931 * 179.97438 * 9 8 6 28 28 H 1.00899 * 110.99713 * 298.54542 * 16 14 4 29 29 H 1.00901 * 110.99704 * 62.49841 * 16 14 4 30 30 H 1.08993 * 115.55003 * 38.19961 * 19 17 2 31 31 H 1.09008 * 117.49967 * 0.02562 * 20 19 17 32 32 H 1.09002 * 117.50327 * 145.01930 * 20 19 17 33 33 H 1.09000 * 117.50304 * 252.51117 * 21 20 19 34 34 H 1.09011 * 117.49763 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9989 1.3809 0.0000 4 6 3.2982 1.3661 0.8265 5 1 3.2141 2.0444 1.6756 6 6 4.4716 1.7525 -0.0365 7 1 5.2812 1.0547 -0.1913 8 6 4.5143 2.9992 -0.6239 9 7 3.5285 3.8491 -0.4353 10 14 5.9725 3.4811 -1.6873 11 1 6.9395 2.3554 -1.7411 12 1 5.5016 3.7947 -3.0604 13 1 6.6353 4.6763 -1.1065 14 6 3.4491 -0.0927 1.3154 15 1 4.1115 -0.6538 0.6562 16 7 3.9385 -0.1289 2.7001 17 6 2.0013 -0.6379 1.2312 18 1 1.4237 -0.3321 2.1036 19 6 2.0014 -2.1617 1.0930 20 6 0.9624 -2.9442 1.8985 21 6 2.4355 -2.9814 2.3098 22 1 -0.3634 0.5867 -0.8436 23 1 -0.3634 -1.0240 -0.0863 24 1 -0.3634 0.4373 0.9300 25 1 1.2757 2.0562 0.4570 26 1 2.2121 1.6968 -1.0213 27 1 3.5588 4.7263 -0.8483 28 1 4.8487 0.3003 2.7732 29 1 3.2807 0.3089 3.3276 30 1 2.2671 -2.5443 0.1076 31 1 0.2784 -2.3734 2.5267 32 1 0.5441 -3.8418 1.4431 33 1 2.9866 -3.9035 2.1249 34 1 2.7210 -2.4350 3.2088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259745029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:39 Heat of formation + Delta-G solvation = 5.978163 kcal Electronic energy + Delta-G solvation = -14574.008333 eV Core-core repulsion = 12313.266118 eV Total energy + Delta-G solvation = -2260.742214 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45954 -37.28248 -35.23405 -34.42282 -30.88046 -28.86904 -27.18518 -24.91912 -23.09232 -22.80797 -21.23981 -20.88328 -18.38000 -16.90814 -16.79859 -16.43441 -15.97601 -15.63881 -14.63228 -14.51325 -14.26977 -13.96659 -13.72425 -13.08072 -12.90828 -12.73988 -12.51172 -12.30937 -12.23627 -12.14674 -11.94391 -11.66003 -11.00771 -10.95358 -10.65982 -10.52364 -9.34355 -9.23710 -8.16809 -6.27058 1.37891 1.40723 1.51780 2.40605 2.98734 3.13588 3.20253 3.81194 4.01271 4.15035 4.24679 4.30894 4.38691 4.44067 4.55886 4.64039 4.74983 4.80805 4.90783 4.95933 5.06642 5.16231 5.23076 5.38438 5.48237 5.50257 5.69101 5.72693 6.08829 6.23595 6.33234 6.46769 6.68868 6.84172 7.40860 8.91489 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.041705 B = 0.009528 C = 0.008526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.220733 B = 2937.918784 C = 3283.357383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.531 5.531 3 C 0.081 3.919 4 C 0.008 3.992 5 H 0.001 0.999 6 C -0.520 4.520 7 H 0.053 0.947 8 C 0.013 3.987 9 N -0.920 5.920 10 Si 0.954 3.046 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.280 1.280 14 C 0.110 3.890 15 H 0.067 0.933 16 N -0.824 5.824 17 C 0.111 3.889 18 H 0.040 0.960 19 C -0.143 4.143 20 C -0.173 4.173 21 C -0.156 4.156 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.020 0.980 25 H 0.002 0.998 26 H 0.045 0.955 27 H 0.260 0.740 28 H 0.343 0.657 29 H 0.334 0.666 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 -9.681 4.277 11.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.256 5.256 3 C -0.047 4.047 4 C -0.013 4.013 5 H 0.019 0.981 6 C -0.559 4.559 7 H 0.071 0.929 8 C -0.186 4.186 9 N -0.560 5.560 10 Si 0.780 3.220 11 H -0.191 1.191 12 H -0.209 1.209 13 H -0.206 1.206 14 C -0.002 4.002 15 H 0.085 0.915 16 N -0.351 5.351 17 C 0.003 3.997 18 H 0.058 0.942 19 C -0.161 4.161 20 C -0.210 4.210 21 C -0.194 4.194 22 H 0.078 0.922 23 H 0.102 0.898 24 H 0.039 0.961 25 H 0.020 0.980 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.155 0.845 29 H 0.145 0.855 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.033 -10.587 3.683 11.913 hybrid contribution 0.278 2.501 -0.174 2.522 sum -3.755 -8.086 3.508 9.581 Atomic orbital electron populations 1.22465 0.87617 1.02505 0.99847 1.64614 1.08415 1.15701 1.36823 1.22528 0.95675 0.86465 1.00048 1.20250 0.93299 0.93426 0.94345 0.98132 1.21441 1.05144 0.99376 1.29904 0.92883 1.25752 0.98558 0.96603 0.97715 1.70092 1.33112 1.07463 1.45290 0.85555 0.79778 0.78150 0.78483 1.19077 1.20894 1.20616 1.22219 0.94431 0.94036 0.89525 0.91451 1.59001 1.07525 1.62960 1.05574 1.22172 0.94279 0.93086 0.90183 0.94199 1.21891 1.06141 0.91298 0.96806 1.23043 0.92302 1.02321 1.03291 1.22882 0.96800 1.01210 0.98506 0.92156 0.89758 0.96116 0.97980 0.93606 0.93068 0.84501 0.85494 0.88653 0.89225 0.87621 0.88198 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 9.30 127.69 1.19 2.00 16 2 N -0.53 -21.63 5.25 -884.23 -4.64 -26.27 16 3 C 0.08 4.00 5.50 86.45 0.48 4.47 16 4 C 0.01 0.38 2.65 -10.66 -0.03 0.35 16 5 H 0.00 0.03 8.05 -2.39 -0.02 0.01 16 6 C -0.52 -28.55 8.37 25.60 0.21 -28.33 16 7 H 0.05 2.90 7.57 -2.91 -0.02 2.88 16 8 C 0.01 0.69 5.08 84.65 0.43 1.12 16 9 N -0.92 -53.45 12.32 21.45 0.26 -53.18 16 10 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 C 0.11 4.52 3.12 46.12 0.14 4.66 16 15 H 0.07 3.03 7.62 -2.38 -0.02 3.01 16 16 N -0.82 -28.36 8.93 -163.69 -1.46 -29.82 16 17 C 0.11 4.07 2.07 45.26 0.09 4.16 16 18 H 0.04 1.45 7.63 -2.39 -0.02 1.44 16 19 C -0.14 -4.36 5.26 -10.79 -0.06 -4.42 16 20 C -0.17 -4.13 10.19 30.59 0.31 -3.82 16 21 C -0.16 -4.04 10.16 30.59 0.31 -3.73 16 22 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 23 H 0.08 2.39 8.11 -2.39 -0.02 2.37 16 24 H 0.02 0.67 7.96 -2.39 -0.02 0.65 16 25 H 0.00 0.09 7.77 -2.39 -0.02 0.08 16 26 H 0.05 2.56 7.13 -2.38 -0.02 2.55 16 27 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.34 11.85 9.07 -89.69 -0.81 11.04 16 29 H 0.33 10.80 8.86 -89.69 -0.79 10.01 16 30 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.09 2.09 8.12 -2.38 -0.02 2.07 16 32 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.10 2.64 7.75 -2.38 -0.02 2.62 16 Total: -1.00 -59.08 275.57 -1.25 -60.33 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -0.52 Total: 26.50 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 3.08 Total: -23.53 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -5.84 Total: -109.27 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -59.08 -1.25 -60.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259745029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.311 kcal (2) G-P(sol) polarization free energy of solvation -59.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds