Wall clock time and date at job start Mon Mar 30 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31265 * 1 3 3 Si 1.86802 * 119.99643 * 2 1 4 4 H 1.48500 * 109.47465 * 270.00219 * 3 2 1 5 5 H 1.48507 * 109.47212 * 30.00661 * 3 2 1 6 6 H 1.48508 * 109.46988 * 150.00345 * 3 2 1 7 7 C 1.38991 * 120.00466 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00404 * 179.97438 * 7 2 1 9 9 N 1.37487 * 119.99797 * 0.02562 * 7 2 1 10 10 N 1.40411 * 126.83554 * 359.83801 * 9 7 2 11 11 N 1.28916 * 108.26173 * 179.97438 * 10 9 7 12 12 C 1.33297 * 109.81282 * 0.27128 * 11 10 9 13 13 C 1.35880 * 109.18171 * 359.75041 * 12 11 10 14 14 C 1.50196 * 126.47599 * 180.37814 * 13 12 11 15 15 C 1.52524 * 111.38224 * 339.15142 * 14 13 12 16 16 C 1.53327 * 110.43345 * 58.64084 * 15 14 13 17 17 S 1.76803 * 127.25007 * 179.67793 * 12 11 10 18 18 H 0.97005 * 120.00589 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.09588 * 99.64481 * 14 13 12 20 20 H 1.09002 * 109.09368 * 218.72566 * 14 13 12 21 21 H 1.09001 * 109.30907 * 178.93757 * 15 14 13 22 22 H 1.09002 * 109.31458 * 298.54102 * 15 14 13 23 23 H 1.09004 * 109.74712 * 46.80509 * 16 15 14 24 24 H 1.09004 * 109.74517 * 167.47460 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 2.4940 2.0466 -1.4000 5 1 1.4440 2.6527 0.7002 6 1 3.5442 1.4403 0.7000 7 6 2.0077 -1.2036 -0.0005 8 1 3.0876 -1.2036 -0.0010 9 7 1.3203 -2.3943 -0.0016 10 7 -0.0738 -2.5615 0.0009 11 7 -0.3291 -3.8251 -0.0017 12 6 0.8106 -4.5164 0.0000 13 6 1.8579 -3.6506 -0.0015 14 6 3.3155 -4.0125 -0.0083 15 6 3.5374 -5.4361 0.4921 16 6 2.7688 -6.4359 -0.3800 17 16 0.9958 -6.2747 0.0056 18 1 -0.4851 0.8400 0.0004 19 1 3.6992 -3.9279 -1.0251 20 1 3.8578 -3.3204 0.6360 21 1 4.6016 -5.6693 0.4554 22 1 3.1864 -5.5154 1.5210 23 1 2.9385 -6.2125 -1.4333 24 1 3.1036 -7.4497 -0.1602 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259745074.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:23 Heat of formation + Delta-G solvation = 54.546453 kcal Electronic energy + Delta-G solvation = -11858.276073 eV Core-core repulsion = 9705.300709 eV Total energy + Delta-G solvation = -2152.975364 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.15404 -36.51086 -36.13508 -33.38958 -30.65783 -28.03418 -27.63158 -23.59436 -23.14939 -21.28932 -19.77408 -17.64241 -17.19491 -16.50439 -15.92623 -15.59911 -15.03077 -14.87773 -14.13164 -13.79237 -13.56763 -13.17004 -12.93063 -12.30588 -12.18300 -12.10929 -11.95806 -11.79186 -11.51363 -10.78859 -10.65863 -10.04946 -8.78259 -8.19617 -6.70719 0.79576 0.95842 1.33960 1.54666 1.58949 1.64946 1.96751 2.04565 2.68750 2.83941 3.88423 3.96386 4.08547 4.48876 4.57176 4.61006 4.70803 4.85806 4.92737 5.02552 5.16342 5.28877 5.58257 5.86629 6.47689 7.08049 8.01369 8.22432 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.054750 B = 0.010279 C = 0.008776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.296211 B = 2723.377523 C = 3189.744377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C -0.004 4.004 3 Si 1.031 2.969 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.237 1.237 7 C -0.331 4.331 8 H 0.152 0.848 9 N -0.149 5.149 10 N -0.156 5.156 11 N -0.347 5.347 12 C -0.074 4.074 13 C -0.104 4.104 14 C -0.031 4.031 15 C -0.106 4.106 16 C -0.086 4.086 17 S -0.112 6.112 18 H 0.290 0.710 19 H 0.081 0.919 20 H 0.081 0.919 21 H 0.128 0.872 22 H 0.065 0.935 23 H 0.092 0.908 24 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.655 -4.519 -0.180 13.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.219 4.219 3 Si 0.847 3.153 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.160 1.160 7 C -0.469 4.469 8 H 0.169 0.831 9 N 0.080 4.920 10 N -0.131 5.131 11 N -0.204 5.204 12 C -0.333 4.333 13 C -0.243 4.243 14 C -0.071 4.071 15 C -0.145 4.145 16 C -0.234 4.234 17 S 0.116 5.884 18 H 0.100 0.900 19 H 0.099 0.901 20 H 0.100 0.900 21 H 0.146 0.854 22 H 0.084 0.916 23 H 0.111 0.889 24 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.103 -4.574 0.011 11.090 hybrid contribution 1.151 1.518 -0.268 1.924 sum 11.255 -3.056 -0.257 11.665 Atomic orbital electron populations 1.70316 1.09013 1.30907 1.32901 1.27244 0.96544 1.05120 0.93011 0.84432 0.78444 0.72552 0.79852 1.18229 1.19558 1.15952 1.21080 0.93868 0.80545 1.51357 0.83111 1.46934 1.06459 1.05622 1.32972 1.82539 0.90063 1.07051 1.33452 1.73988 1.25821 1.00709 1.19901 1.22752 0.91338 0.99442 1.19753 1.21980 0.98208 0.84199 1.19960 1.19805 0.85929 0.98673 1.02656 1.21611 1.02901 0.91010 0.98942 1.23905 0.90529 1.05228 1.03773 1.84663 1.16238 0.96118 1.91411 0.89954 0.90088 0.90027 0.85441 0.91646 0.88906 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -44.92 11.88 21.66 0.26 -44.66 14 2 C 0.00 -0.17 5.50 84.96 0.47 0.29 14 3 Si 1.03 35.50 29.55 68.60 2.03 37.52 14 4 H -0.26 -8.50 7.11 99.48 0.71 -7.79 14 5 H -0.27 -9.21 7.11 99.48 0.71 -8.51 14 6 H -0.24 -7.24 7.11 99.48 0.71 -6.53 14 7 C -0.33 -16.96 10.09 83.99 0.85 -16.12 14 8 H 0.15 6.52 7.49 -2.91 -0.02 6.50 14 9 N -0.15 -8.46 3.78 -178.43 -0.67 -9.13 14 10 N -0.16 -9.97 11.72 37.02 0.43 -9.54 14 11 N -0.35 -21.22 12.34 -55.75 -0.69 -21.91 14 12 C -0.07 -3.82 7.37 83.92 0.62 -3.20 14 13 C -0.10 -5.08 6.79 41.10 0.28 -4.80 14 14 C -0.03 -1.05 5.52 29.53 0.16 -0.89 14 15 C -0.11 -2.62 5.73 30.55 0.18 -2.44 14 16 C -0.09 -2.16 6.50 72.09 0.47 -1.69 14 17 S -0.11 -4.33 22.53 -56.49 -1.27 -5.60 14 18 H 0.29 14.59 8.31 -92.70 -0.77 13.82 14 19 H 0.08 2.47 8.14 -2.39 -0.02 2.45 14 20 H 0.08 2.58 7.93 -2.39 -0.02 2.56 14 21 H 0.13 1.96 8.14 -2.39 -0.02 1.94 14 22 H 0.06 1.80 8.04 -2.39 -0.02 1.79 14 23 H 0.09 2.24 8.11 -2.38 -0.02 2.22 14 24 H 0.15 2.49 8.14 -2.38 -0.02 2.47 14 Total: -1.00 -75.56 224.91 4.32 -71.24 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.21 Total: 10.91 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 3.02 Total: -28.84 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -0.67 Total: -85.24 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 2.03 Total: 37.52 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -1.27 Total: -5.60 kcal Total: -75.56 4.32 -71.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259745074.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.791 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds