Wall clock time and date at job start Mon Mar 30 2020 02:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48497 * 109.46850 * 269.99552 * 3 2 1 5 5 H 1.48497 * 109.47216 * 29.99453 * 3 2 1 6 6 H 1.48501 * 109.46793 * 149.99900 * 3 2 1 7 7 C 1.37874 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00635 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99589 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21353 * 120.00217 * 0.02562 * 11 10 9 13 13 C 1.46440 * 119.99873 * 179.72534 * 11 10 9 14 14 C 1.36506 * 122.71936 * 180.02562 * 13 11 10 15 15 S 1.71007 * 108.91977 * 179.90063 * 14 13 11 16 16 C 1.75931 * 90.71942 * 0.30098 * 15 14 13 17 17 N 1.28718 * 109.80813 * 359.81976 * 16 15 14 18 18 H 0.96998 * 120.00586 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 60.00104 * 9 7 2 20 20 H 1.09000 * 109.47629 * 300.00433 * 9 7 2 21 21 H 1.09004 * 109.47066 * 60.00203 * 10 9 7 22 22 H 1.09000 * 109.47665 * 300.00395 * 10 9 7 23 23 H 1.08002 * 125.54141 * 359.97438 * 14 13 11 24 24 H 1.08003 * 125.09279 * 179.82269 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5286 -2.6364 0.0022 12 8 6.1354 -1.5854 0.0018 13 6 6.2608 -3.9045 0.0093 14 6 7.6244 -3.9693 0.0102 15 16 8.1015 -5.6114 0.0220 16 6 6.4184 -6.1235 0.0159 17 7 5.6486 -5.0919 0.0098 18 1 -0.4851 0.8400 -0.0004 19 1 3.8745 -0.6799 0.8912 20 1 3.8753 -0.6803 -0.8888 21 1 3.6586 -3.1509 -0.8875 22 1 3.6579 -3.1498 0.8924 23 1 8.2931 -3.1213 0.0054 24 1 6.0816 -7.1497 0.0172 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259763371.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:13 Heat of formation + Delta-G solvation = -25.371142 kcal Electronic energy + Delta-G solvation = -11168.481976 eV Core-core repulsion = 8979.748374 eV Total energy + Delta-G solvation = -2188.733603 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.28049 -39.44046 -35.61491 -33.39596 -31.66041 -28.97579 -26.37269 -24.04127 -22.10128 -20.29795 -19.46712 -18.52672 -17.29628 -16.66031 -16.39081 -15.96066 -15.33370 -15.21425 -14.66833 -14.29826 -14.12830 -13.40669 -13.04261 -12.92031 -12.21875 -11.98920 -11.78101 -11.44412 -10.88164 -10.79952 -10.79333 -10.69182 -9.86170 -8.32732 -6.36730 -0.61596 0.33742 0.60321 0.65397 1.32452 1.33746 1.48612 2.06871 2.33752 2.92989 3.01872 3.50586 4.00955 4.25395 4.30467 4.45475 4.53809 4.84444 5.08049 5.30447 5.39542 5.58136 6.19658 6.27047 6.65022 6.72227 7.28116 8.83338 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.073610 B = 0.006547 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.289351 B = 4275.827468 C = 4635.662065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.533 4.533 8 H 0.044 0.956 9 C -0.001 4.001 10 C -0.128 4.128 11 C 0.429 3.571 12 O -0.484 6.484 13 C -0.055 4.055 14 C -0.219 4.219 15 S 0.232 5.768 16 C 0.038 3.962 17 N -0.460 5.460 18 H 0.268 0.732 19 H 0.013 0.987 20 H 0.012 0.988 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.192 0.808 24 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.008 -13.826 0.046 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.571 4.571 8 H 0.062 0.938 9 C -0.039 4.039 10 C -0.166 4.166 11 C 0.307 3.693 12 O -0.361 6.361 13 C -0.187 4.187 14 C -0.361 4.361 15 S 0.487 5.513 16 C -0.263 4.263 17 N -0.173 5.173 18 H 0.077 0.923 19 H 0.032 0.968 20 H 0.031 0.969 21 H 0.115 0.885 22 H 0.115 0.885 23 H 0.209 0.791 24 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 19.544 -13.759 0.054 23.902 hybrid contribution -0.766 1.695 -0.026 1.860 sum 18.778 -12.065 0.029 22.320 Atomic orbital electron populations 1.70036 1.07888 1.28213 1.52315 1.25885 0.95605 1.03092 0.94066 0.85759 0.79257 0.78995 0.79312 1.19106 1.20080 1.18303 1.21408 0.91299 0.93671 1.50695 0.93786 1.19331 0.94323 0.93753 0.96474 1.21665 0.91183 0.99255 1.04472 1.22082 0.91935 0.86079 0.69244 1.90495 1.72437 1.34584 1.38551 1.21131 0.91359 0.93942 1.12267 1.27302 0.98803 1.06147 1.03860 1.83617 1.11074 0.93332 1.63272 1.30177 0.91162 1.03174 1.01795 1.66904 1.38010 0.97993 1.14390 0.92287 0.96833 0.96928 0.88509 0.88514 0.79072 0.73516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.61 13.96 21.45 0.30 -60.31 14 2 C 0.01 0.67 5.47 84.65 0.46 1.14 14 3 Si 0.94 47.37 27.47 68.60 1.88 49.25 14 4 H -0.27 -12.84 7.11 99.48 0.71 -12.13 14 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 14 6 H -0.26 -12.78 6.54 99.48 0.65 -12.12 14 7 C -0.53 -32.29 9.66 25.60 0.25 -32.04 14 8 H 0.04 2.85 7.99 -2.91 -0.02 2.82 14 9 C 0.00 -0.07 3.33 29.85 0.10 0.03 14 10 C -0.13 -5.53 5.25 29.85 0.16 -5.37 14 11 C 0.43 16.62 7.11 27.82 0.20 16.81 14 12 O -0.48 -20.90 16.31 -3.26 -0.05 -20.95 14 13 C -0.05 -1.66 6.65 40.61 0.27 -1.39 14 14 C -0.22 -4.98 10.64 67.42 0.72 -4.26 14 15 S 0.23 3.05 23.18 -56.49 -1.31 1.74 14 16 C 0.04 0.60 12.45 130.70 1.63 2.23 14 17 N -0.46 -12.41 10.28 -188.74 -1.94 -14.35 14 18 H 0.27 15.99 8.31 -92.71 -0.77 15.22 14 19 H 0.01 0.71 7.16 -2.38 -0.02 0.70 14 20 H 0.01 0.65 7.53 -2.39 -0.02 0.64 14 21 H 0.10 4.07 8.14 -2.38 -0.02 4.05 14 22 H 0.10 4.07 8.14 -2.39 -0.02 4.05 14 23 H 0.19 4.03 8.02 -2.91 -0.02 4.01 14 24 H 0.25 1.60 8.06 -2.91 -0.02 1.57 14 Total: -1.00 -74.97 235.86 3.81 -71.16 By element: Atomic # 1 Polarization: -4.85 SS G_CDS: 1.15 Total: -3.70 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 3.78 Total: -22.84 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -1.64 Total: -74.66 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.05 Total: -20.95 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.88 Total: 49.25 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.31 Total: 1.74 kcal Total: -74.97 3.81 -71.16 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763371.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.794 kcal (2) G-P(sol) polarization free energy of solvation -74.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds