Wall clock time and date at job start Mon Mar 30 2020 02:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99990 * 2 1 4 4 H 1.48501 * 109.47091 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47193 * 300.00470 * 3 2 1 6 6 H 1.48503 * 109.46993 * 60.00246 * 3 2 1 7 7 C 1.37876 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00068 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00001 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46906 * 300.00452 * 9 7 2 11 11 N 1.46505 * 109.46852 * 60.00210 * 9 7 2 12 12 C 1.34781 * 119.99664 * 207.14726 * 11 9 7 13 13 O 1.21277 * 119.99924 * 354.72403 * 12 11 9 14 14 C 1.50697 * 109.47051 * 180.02562 * 9 7 2 15 15 C 1.33386 * 125.20061 * 104.81076 * 14 9 7 16 16 C 1.38426 * 114.91877 * 179.85863 * 15 14 9 17 17 C 1.33386 * 114.92327 * 0.42646 * 16 15 14 18 18 S 1.75883 * 125.20299 * 285.11211 * 14 9 7 19 19 H 0.97001 * 120.00531 * 359.97438 * 1 2 3 20 20 H 0.97004 * 120.00083 * 27.14816 * 11 9 7 21 21 H 1.08002 * 119.99683 * 174.45136 * 12 11 9 22 22 H 1.07997 * 122.54214 * 0.02562 * 15 14 9 23 23 H 1.07997 * 122.53932 * 180.20329 * 16 15 14 24 24 H 1.08000 * 125.20871 * 179.74753 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 7 0.4083 -2.5765 -1.1965 12 6 -0.7182 -3.3162 -1.1803 13 8 -0.9851 -3.9935 -0.2103 14 6 2.2303 -3.6446 -0.0005 15 6 2.5182 -4.4100 1.0532 16 6 3.4491 -5.4062 0.8135 17 6 3.9237 -5.4440 -0.4324 18 16 3.1740 -4.1717 -1.3880 19 1 -0.4851 0.8400 0.0004 20 1 0.6612 -2.0953 -1.9999 21 1 -1.3855 -3.3024 -2.0294 22 1 2.0579 -4.2654 2.0194 23 1 3.7696 -6.0979 1.5784 24 1 4.6565 -6.1478 -0.7985 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260041702.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:27 Heat of formation + Delta-G solvation = -29.476417 kcal Electronic energy + Delta-G solvation = -11706.600231 eV Core-core repulsion = 9517.688611 eV Total energy + Delta-G solvation = -2188.911621 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.00617 -38.44639 -36.20007 -33.91016 -31.29446 -28.35963 -25.51602 -23.79024 -21.95858 -20.08910 -19.27372 -18.08117 -17.73903 -16.67699 -16.12183 -15.99182 -15.01667 -14.63620 -14.08243 -13.95501 -13.48504 -13.35246 -12.88771 -12.71039 -12.57922 -12.02677 -11.61749 -11.47124 -10.93832 -10.57437 -9.67048 -9.36501 -9.19422 -8.22847 -6.45352 0.30454 0.91829 1.31643 1.41227 1.45630 1.56779 1.99877 2.11342 2.38412 2.84344 3.33284 4.27837 4.34740 4.48307 4.76860 4.85572 5.13184 5.36649 5.59376 5.61927 5.71180 5.88142 6.06357 6.66244 7.10065 7.28552 7.68042 8.80746 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.030258 B = 0.012761 C = 0.010257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.146282 B = 2193.594151 C = 2729.200772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.035 3.965 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.285 1.285 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.329 3.671 10 H 0.015 0.985 11 N -0.686 5.686 12 C 0.481 3.519 13 O -0.628 6.628 14 C -0.153 4.153 15 C -0.182 4.182 16 C -0.134 4.134 17 C -0.232 4.232 18 S 0.097 5.903 19 H 0.267 0.733 20 H 0.399 0.601 21 H 0.156 0.844 22 H 0.121 0.879 23 H 0.161 0.839 24 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 -5.080 -4.872 9.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.169 4.169 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.211 1.211 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.224 3.776 10 H 0.033 0.967 11 N -0.334 5.334 12 C 0.250 3.750 13 O -0.511 6.511 14 C -0.272 4.272 15 C -0.212 4.212 16 C -0.164 4.164 17 C -0.367 4.367 18 S 0.359 5.641 19 H 0.076 0.924 20 H 0.233 0.767 21 H 0.172 0.828 22 H 0.139 0.861 23 H 0.178 0.822 24 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 5.691 -4.963 -5.690 9.456 hybrid contribution -0.025 0.796 1.457 1.660 sum 5.666 -4.168 -4.234 8.210 Atomic orbital electron populations 1.70132 1.07287 1.28020 1.47804 1.25783 0.95555 1.02454 0.93106 0.85409 0.79023 0.78849 0.77764 1.19133 1.19778 1.21068 1.21403 0.93264 0.89896 1.53765 0.91900 1.16765 0.85844 0.89053 0.85913 0.96746 1.46929 1.23893 1.46771 1.15809 1.23117 0.82742 0.77822 0.91329 1.90574 1.75843 1.44830 1.39830 1.25503 1.02796 1.01771 0.97120 1.20272 1.02822 0.98395 0.99703 1.20280 0.98344 0.99832 0.97958 1.25876 1.08309 1.04890 0.97604 1.83724 1.37722 1.28106 1.14535 0.92381 0.76717 0.82796 0.86136 0.82182 0.79021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.28 12.77 21.45 0.27 -48.00 14 2 C 0.03 1.78 5.39 84.65 0.46 2.23 14 3 Si 0.96 40.62 29.54 68.60 2.03 42.65 14 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 14 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 14 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 14 7 C -0.54 -28.21 8.62 25.60 0.22 -27.99 14 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 14 9 C 0.33 16.58 2.26 43.50 0.10 16.68 14 10 H 0.01 0.89 7.56 -2.39 -0.02 0.87 14 11 N -0.69 -30.43 4.22 -463.42 -1.96 -32.38 14 12 C 0.48 20.63 12.61 129.79 1.64 22.27 14 13 O -0.63 -32.94 16.86 -3.02 -0.05 -32.99 14 14 C -0.15 -6.81 5.33 24.59 0.13 -6.68 14 15 C -0.18 -7.56 10.03 21.22 0.21 -7.35 14 16 C -0.13 -4.41 10.18 21.22 0.22 -4.19 14 17 C -0.23 -7.01 11.23 66.72 0.75 -6.26 14 18 S 0.10 3.46 23.17 -56.49 -1.31 2.15 14 19 H 0.27 13.64 8.31 -92.71 -0.77 12.87 14 20 H 0.40 16.13 8.72 -92.71 -0.81 15.32 14 21 H 0.16 4.85 8.06 -2.91 -0.02 4.83 14 22 H 0.12 5.10 8.06 -2.91 -0.02 5.08 14 23 H 0.16 4.15 8.06 -2.91 -0.02 4.12 14 24 H 0.19 4.19 8.06 -2.91 -0.02 4.17 14 Total: -1.00 -64.51 238.08 3.11 -61.40 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.41 Total: 18.47 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 3.72 Total: -11.29 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.68 Total: -80.39 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.05 Total: -32.99 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.31 Total: 2.15 kcal Total: -64.51 3.11 -61.40 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260041702.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.926 kcal (2) G-P(sol) polarization free energy of solvation -64.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds