Wall clock time and date at job start Mon Mar 30 2020 02:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47125 * 2 1 4 4 C 1.53002 * 109.47232 * 120.00069 * 2 1 3 5 5 H 1.09003 * 108.76614 * 302.25418 * 4 2 1 6 6 C 1.50472 * 108.87370 * 60.76534 * 4 2 1 7 7 C 1.54248 * 108.51094 * 214.93129 * 6 4 2 8 8 C 1.45537 * 112.40714 * 280.00564 * 7 6 4 9 9 C 1.54135 * 112.32533 * 61.94334 * 8 7 6 10 10 H 1.08996 * 109.71898 * 39.69921 * 9 8 7 11 11 C 1.50701 * 109.48999 * 160.24346 * 9 8 7 12 12 H 1.07998 * 120.00177 * 119.00569 * 11 9 8 13 13 C 1.37884 * 119.99713 * 299.01367 * 11 9 8 14 14 N 1.31510 * 119.99952 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 119.99772 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47260 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46885 * 120.00137 * 15 13 11 18 18 H 1.48501 * 109.47507 * 240.00021 * 15 13 11 19 19 C 1.50478 * 108.58135 * 279.90376 * 9 8 7 20 20 C 1.54060 * 112.41934 * 94.23461 * 19 9 8 21 21 H 1.08996 * 109.47024 * 174.25216 * 1 2 3 22 22 H 1.08992 * 109.46974 * 294.25910 * 1 2 3 23 23 H 1.09001 * 109.46952 * 54.25312 * 1 2 3 24 24 H 1.09004 * 109.47404 * 239.99849 * 2 1 3 25 25 H 1.09000 * 109.47055 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.46869 * 299.99883 * 3 2 1 27 27 H 1.09000 * 109.47292 * 60.00129 * 3 2 1 28 28 H 1.08999 * 109.63006 * 334.63557 * 6 4 2 29 29 H 1.08998 * 109.63098 * 95.22420 * 6 4 2 30 30 H 1.09000 * 108.89573 * 40.76664 * 7 6 4 31 31 H 1.09006 * 108.88907 * 159.25443 * 7 6 4 32 32 H 1.09005 * 108.89622 * 182.69367 * 8 7 6 33 33 H 1.08996 * 108.90008 * 301.28121 * 8 7 6 34 34 H 0.97006 * 119.99900 * 180.02562 * 14 13 11 35 35 H 1.09003 * 108.86935 * 333.51110 * 19 9 8 36 36 H 1.08997 * 108.87954 * 214.96851 * 19 9 8 37 37 H 1.09003 * 108.81722 * 79.19659 * 20 19 9 38 38 H 1.09003 * 108.81582 * 197.47699 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6376 -0.2225 2.1310 6 6 1.5467 -2.1426 1.2262 7 6 1.2540 -2.5830 2.6752 8 6 2.4607 -2.9653 3.3933 9 6 3.4572 -1.7970 3.5273 10 1 2.9158 -0.8734 3.7319 11 6 4.4198 -2.0835 4.6509 12 1 5.4778 -2.1612 4.4490 13 6 3.9495 -2.2467 5.9368 14 7 2.6610 -2.1518 6.1827 15 14 5.1425 -2.6025 7.3294 16 1 6.5263 -2.6589 6.7935 17 1 5.0499 -1.5256 8.3477 18 1 4.7997 -3.9054 7.9542 19 6 4.2152 -1.6627 2.2343 20 6 3.5777 -0.6314 1.2839 21 1 -0.3633 -1.0225 -0.1029 22 1 -0.3633 0.4222 0.9369 23 1 -0.3633 0.6004 -0.8341 24 1 1.8934 -0.5139 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 0.6340 -2.2039 0.6334 29 1 2.3112 -2.7886 0.7945 30 1 0.7741 -1.7596 3.2042 31 1 0.5712 -3.4325 2.6547 32 1 2.1842 -3.3103 4.3897 33 1 2.9455 -3.7824 2.8593 34 1 2.3302 -2.2663 7.0874 35 1 4.2393 -2.6326 1.7374 36 1 5.2372 -1.3545 2.4550 37 1 3.8641 0.3692 1.6077 38 1 3.9622 -0.7962 0.2773 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260097289.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:16 Heat of formation + Delta-G solvation = -42.405103 kcal Electronic energy + Delta-G solvation = -14918.152075 eV Core-core repulsion = 12758.852148 eV Total energy + Delta-G solvation = -2159.299927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.75700 -35.25566 -32.41856 -31.40874 -29.49813 -27.20690 -25.39223 -23.53287 -22.53808 -20.10825 -19.47034 -18.07691 -16.31840 -14.90232 -14.49062 -14.34483 -13.87575 -13.38265 -12.85044 -12.76176 -12.49410 -12.03606 -11.98846 -11.72741 -11.18704 -11.14221 -10.95594 -10.82759 -10.68142 -10.53284 -10.17854 -10.03221 -9.62806 -9.49415 -9.38664 -9.06510 -8.83485 -8.59190 -8.18208 -5.90358 -3.95665 3.33205 3.41347 3.45318 4.50206 5.07133 5.21624 5.22565 5.38003 5.57237 5.79328 5.83425 5.85977 5.97777 6.04702 6.08490 6.17172 6.24081 6.29728 6.39436 6.40193 6.46979 6.56185 6.67965 6.73691 6.77329 7.00233 7.06861 7.09607 7.24979 7.44578 7.50654 7.68141 7.86145 8.16209 8.26003 8.60404 9.09945 9.68146 11.15210 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.047570 B = 0.008272 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.461585 B = 3384.111361 C = 3581.525184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.076 4.076 5 H 0.069 0.931 6 C -0.115 4.115 7 C -0.102 4.102 8 C -0.114 4.114 9 C 0.053 3.947 10 H 0.028 0.972 11 C -0.509 4.509 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.888 5.888 15 Si 0.885 3.115 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.106 4.106 20 C -0.105 4.105 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.045 0.955 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.085 0.915 33 H 0.021 0.979 34 H 0.257 0.743 35 H 0.039 0.961 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.102 2.976 -10.308 11.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.094 4.094 5 H 0.088 0.912 6 C -0.152 4.152 7 C -0.139 4.139 8 C -0.152 4.152 9 C 0.035 3.965 10 H 0.046 0.954 11 C -0.547 4.547 12 H 0.071 0.929 13 C -0.142 4.142 14 N -0.527 5.527 15 Si 0.713 3.287 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.144 4.144 20 C -0.143 4.143 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.222 2.969 -10.159 11.063 hybrid contribution 0.601 -0.228 0.876 1.086 sum -2.621 2.741 -9.282 10.027 Atomic orbital electron populations 1.21917 0.95891 1.01445 1.01225 1.21270 0.95216 0.95982 0.98838 1.21880 1.01291 0.96323 1.00947 1.20973 0.95744 0.95916 0.96789 0.91212 1.21520 0.99693 0.96104 0.97876 1.20460 0.99336 0.99705 0.94428 1.20470 0.95022 0.98962 1.00766 1.18347 0.93241 0.94573 0.90347 0.95436 1.21433 0.93287 1.47684 0.92329 0.92921 1.24976 0.94953 0.95623 0.98607 1.69936 1.12200 1.50507 1.20096 0.86649 0.81606 0.77793 0.82616 1.19903 1.21170 1.21158 1.21523 0.99151 0.96692 0.97015 1.21982 0.94282 0.99646 0.98389 0.92425 0.92712 0.93541 0.91958 0.92445 0.93659 0.92800 0.92848 0.92561 0.92883 0.94912 0.89679 0.96001 0.93307 0.94210 0.93570 0.93150 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.81 37.16 0.33 -1.54 16 2 C -0.09 -1.31 2.37 -90.62 -0.21 -1.52 16 3 C -0.15 -1.89 8.78 37.16 0.33 -1.56 16 4 C -0.08 -1.28 1.31 -91.32 -0.12 -1.40 16 5 H 0.07 1.33 6.63 -51.93 -0.34 0.98 16 6 C -0.11 -1.97 4.97 -27.34 -0.14 -2.11 16 7 C -0.10 -2.07 5.26 -29.60 -0.16 -2.22 16 8 C -0.11 -2.73 4.50 -29.66 -0.13 -2.86 16 9 C 0.05 1.33 1.76 -92.44 -0.16 1.17 16 10 H 0.03 0.75 6.97 -51.93 -0.36 0.39 16 11 C -0.51 -14.20 8.43 -34.44 -0.29 -14.49 16 12 H 0.05 1.46 7.46 -52.49 -0.39 1.07 16 13 C 0.06 1.66 5.17 -17.82 -0.09 1.56 16 14 N -0.89 -25.64 11.47 55.43 0.64 -25.01 16 15 Si 0.88 21.57 29.54 -169.99 -5.02 16.55 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 C -0.11 -2.26 4.88 -27.44 -0.13 -2.40 16 20 C -0.11 -1.88 4.20 -25.62 -0.11 -1.99 16 21 H 0.06 0.71 6.22 -51.93 -0.32 0.39 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.74 6.70 -51.93 -0.35 0.39 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.81 5.55 -51.93 -0.29 0.52 16 29 H 0.06 0.99 6.98 -51.93 -0.36 0.62 16 30 H 0.05 1.14 7.47 -51.93 -0.39 0.75 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 2.31 5.89 -51.93 -0.31 2.01 16 33 H 0.02 0.50 7.46 -51.93 -0.39 0.11 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.04 0.83 6.63 -51.93 -0.34 0.48 16 36 H 0.05 1.00 7.49 -51.93 -0.39 0.61 16 37 H 0.05 0.89 7.32 -51.93 -0.38 0.51 16 38 H 0.04 0.66 7.98 -51.93 -0.41 0.25 16 LS Contribution 276.66 15.07 4.17 4.17 Total: -1.00 -27.88 276.66 -7.81 -35.68 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.70 Total: -2.04 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: -0.89 Total: -29.36 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.64 Total: -25.01 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.88 -7.81 -35.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097289.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.721 kcal (2) G-P(sol) polarization free energy of solvation -27.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds