Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46954 * 110.99868 * 2 1 4 4 C 1.53050 * 109.36046 * 183.19182 * 3 2 1 5 5 N 1.46951 * 109.36724 * 301.59790 * 4 3 2 6 6 C 1.46901 * 111.00457 * 183.18909 * 5 4 3 7 7 C 1.50693 * 109.47225 * 169.99696 * 6 5 4 8 8 C 1.35040 * 119.99639 * 126.32011 * 7 6 5 9 9 C 1.40073 * 119.99768 * 6.08114 * 8 7 6 10 10 H 1.07998 * 120.00505 * 6.33074 * 9 8 7 11 11 C 1.40314 * 119.99672 * 186.33532 * 9 8 7 12 12 N 1.30689 * 119.99767 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99988 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47086 * 90.00338 * 13 11 9 15 15 H 1.48500 * 109.47184 * 210.00049 * 13 11 9 16 16 H 1.48495 * 109.47063 * 330.00094 * 13 11 9 17 17 C 1.46955 * 110.88020 * 59.31967 * 5 4 3 18 18 C 1.46950 * 110.99877 * 123.80312 * 2 1 3 19 19 H 1.09001 * 109.47248 * 59.99353 * 1 2 3 20 20 H 1.08998 * 109.47148 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46605 * 299.99431 * 1 2 3 22 22 H 1.08996 * 109.49103 * 63.22576 * 3 2 1 23 23 H 1.09004 * 109.51063 * 303.17183 * 3 2 1 24 24 H 1.09004 * 109.48645 * 181.63185 * 4 3 2 25 25 H 1.09000 * 109.51130 * 61.58019 * 4 3 2 26 26 H 1.08997 * 109.46960 * 290.00653 * 6 5 4 27 27 H 1.09003 * 109.46531 * 49.99994 * 6 5 4 28 28 H 1.07998 * 120.00783 * 306.32390 * 7 6 5 29 29 H 1.08003 * 120.00272 * 186.08170 * 8 7 6 30 30 H 0.96996 * 119.99837 * 179.97438 * 12 11 9 31 31 H 1.09004 * 109.48574 * 60.65133 * 17 5 4 32 32 H 1.08997 * 109.49039 * 180.71368 * 17 5 4 33 33 H 1.08999 * 109.49056 * 296.77296 * 18 2 1 34 34 H 1.09004 * 109.49208 * 56.84266 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3290 -0.0804 5 7 4.0502 0.5658 1.0596 6 6 5.5192 0.5657 1.0595 7 6 6.0215 -0.0076 2.3595 8 6 6.8996 -1.0335 2.3504 9 6 7.4411 -1.4811 1.1385 10 1 7.2374 -0.9430 0.2245 11 6 8.2481 -2.6286 1.1121 12 7 8.7529 -3.0465 -0.0186 13 14 8.6009 -3.5589 2.6931 14 1 7.5603 -4.5982 2.8986 15 1 9.9345 -4.2054 2.5999 16 1 8.5884 -2.6127 3.8375 17 6 3.5235 -0.8061 1.0596 18 6 1.9957 -0.7632 1.1400 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.6939 1.8773 0.9173 23 1 1.6013 1.9133 -0.8600 24 1 3.9178 2.3448 -0.0513 25 1 3.8257 0.8481 -1.0107 26 1 5.8824 -0.0411 0.2302 27 1 5.8825 1.5874 0.9485 28 1 5.6793 0.4019 3.2984 29 1 7.1844 -1.5089 3.2774 30 1 9.3111 -3.8395 -0.0368 31 1 3.8254 -1.3115 0.1422 32 1 3.9178 -1.3470 1.9198 33 1 1.6939 -0.2821 2.0703 34 1 1.6013 -1.7790 1.1109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260169005.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = -1.072121 kcal Electronic energy + Delta-G solvation = -14047.270117 eV Core-core repulsion = 11786.222179 eV Total energy + Delta-G solvation = -2261.047938 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15357 -37.12964 -35.65691 -33.60783 -31.84427 -29.92170 -27.46878 -25.40579 -24.44368 -23.61530 -20.77040 -20.47625 -18.85060 -17.02724 -16.48968 -16.17002 -15.93118 -15.73711 -15.54068 -15.08356 -14.64777 -14.45457 -13.51723 -13.36984 -13.16676 -13.07154 -12.87663 -12.43358 -12.23295 -12.08896 -11.86284 -11.78735 -11.54948 -11.39208 -11.03412 -9.82163 -9.34081 -9.12476 -8.76038 -6.35192 1.20144 1.31481 1.45249 1.77724 2.14480 3.00436 3.10696 3.41075 3.97491 4.12888 4.16243 4.34125 4.39409 4.53783 4.63230 4.64295 4.68092 4.82876 4.84208 4.95542 4.97622 5.01501 5.08275 5.11856 5.21653 5.51334 5.73836 6.02870 6.05795 6.23162 6.30492 6.42997 6.48277 6.93181 7.12195 8.30933 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047404 B = 0.007037 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.530662 B = 3978.098143 C = 4089.511969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.565 5.565 3 C 0.067 3.933 4 C 0.050 3.950 5 N -0.540 5.540 6 C 0.133 3.867 7 C -0.381 4.381 8 C -0.005 4.005 9 C -0.477 4.477 10 H 0.048 0.952 11 C 0.030 3.970 12 N -0.866 5.866 13 Si 0.970 3.030 14 H -0.257 1.257 15 H -0.266 1.266 16 H -0.246 1.246 17 C 0.069 3.931 18 C 0.068 3.932 19 H 0.080 0.920 20 H 0.074 0.926 21 H 0.030 0.970 22 H 0.041 0.959 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.018 0.982 26 H 0.009 0.991 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.291 0.709 31 H 0.008 0.992 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.328 3.299 2.106 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.290 5.290 3 C -0.061 4.061 4 C -0.079 4.079 5 N -0.264 5.264 6 C 0.007 3.993 7 C -0.404 4.404 8 C -0.026 4.026 9 C -0.507 4.507 10 H 0.066 0.934 11 C -0.182 4.182 12 N -0.494 5.494 13 Si 0.791 3.209 14 H -0.181 1.181 15 H -0.191 1.191 16 H -0.169 1.169 17 C -0.059 4.059 18 C -0.060 4.060 19 H 0.098 0.902 20 H 0.093 0.907 21 H 0.049 0.951 22 H 0.060 0.940 23 H 0.115 0.885 24 H 0.103 0.897 25 H 0.036 0.964 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.026 0.974 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.180 3.141 1.906 12.721 hybrid contribution 0.622 -0.439 0.115 0.770 sum -11.557 2.701 2.020 12.040 Atomic orbital electron populations 1.22390 0.85425 1.02788 1.01348 1.62142 1.09430 1.14293 1.43138 1.22117 0.93191 0.89241 1.01515 1.22239 0.95656 0.98546 0.91436 1.62309 1.08546 1.13783 1.41811 1.20458 0.85342 0.97538 0.96003 1.21940 1.13426 1.09723 0.95270 1.20133 0.93380 0.94142 0.94907 1.19615 1.26032 1.09435 0.95643 0.93393 1.27216 0.92575 0.97280 1.01177 1.69648 1.27167 1.22903 1.29656 0.85353 0.78835 0.78468 0.78290 1.18129 1.19068 1.16942 1.21925 0.94703 0.89838 0.99482 1.22099 0.93212 0.98861 0.91814 0.90150 0.90705 0.95128 0.94032 0.88450 0.89741 0.96367 0.97285 0.93610 0.90155 0.90016 0.89892 0.97379 0.91296 0.94062 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.60 127.69 1.23 1.79 16 2 N -0.56 -15.90 4.97 -921.93 -4.58 -20.47 16 3 C 0.07 1.83 5.62 86.31 0.49 2.32 16 4 C 0.05 1.68 5.61 86.31 0.48 2.16 16 5 N -0.54 -21.72 4.70 -900.30 -4.23 -25.95 16 6 C 0.13 6.20 5.17 85.55 0.44 6.65 16 7 C -0.38 -18.68 8.75 24.95 0.22 -18.46 16 8 C 0.00 -0.25 8.87 21.98 0.19 -0.05 16 9 C -0.48 -27.24 9.11 23.22 0.21 -27.03 16 10 H 0.05 3.04 5.89 -2.91 -0.02 3.02 16 11 C 0.03 1.61 5.52 85.37 0.47 2.08 16 12 N -0.87 -48.62 13.92 21.89 0.30 -48.32 16 13 Si 0.97 40.47 27.55 68.60 1.89 42.36 16 14 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 15 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 16 H -0.25 -9.83 6.26 99.48 0.62 -9.21 16 17 C 0.07 2.73 5.44 86.31 0.47 3.20 16 18 C 0.07 2.09 5.62 86.31 0.49 2.58 16 19 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 20 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 21 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 22 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 24 H 0.08 2.59 8.07 -2.39 -0.02 2.58 16 25 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.01 0.49 5.45 -2.39 -0.01 0.47 16 27 H 0.05 2.05 8.03 -2.39 -0.02 2.03 16 28 H 0.08 3.78 8.06 -2.91 -0.02 3.76 16 29 H 0.08 3.92 5.26 -2.91 -0.02 3.90 16 30 H 0.29 14.62 8.29 -92.71 -0.77 13.86 16 31 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.07 2.92 7.20 -2.39 -0.02 2.91 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 2.40 8.13 -2.39 -0.02 2.38 16 Total: -1.00 -61.03 270.42 -0.96 -61.99 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.97 Total: 15.16 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 4.69 Total: -24.77 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -8.51 Total: -94.74 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.89 Total: 42.36 kcal Total: -61.03 -0.96 -61.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260169005.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.917 kcal (2) G-P(sol) polarization free energy of solvation -61.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds