Wall clock time and date at job start Mon Mar 30 2020 02:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00193 * 2 1 4 4 C 1.50700 * 109.46831 * 66.04599 * 3 2 1 5 5 H 1.07995 * 120.00111 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99754 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00125 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00023 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46989 * 89.99892 * 8 6 4 10 10 H 1.48494 * 109.47379 * 209.99830 * 8 6 4 11 11 H 1.48499 * 109.47257 * 330.00353 * 8 6 4 12 12 C 1.46912 * 111.00032 * 236.04741 * 2 1 3 13 13 C 1.53935 * 113.73019 * 303.95425 * 12 2 1 14 14 N 1.47962 * 86.30001 * 221.86451 * 13 12 2 15 15 C 1.46903 * 111.00056 * 137.63674 * 14 13 12 16 16 C 1.52997 * 117.50024 * 243.62579 * 15 14 13 17 17 C 1.52993 * 117.49991 * 175.00097 * 15 14 13 18 18 C 1.48308 * 90.62534 * 24.68684 * 14 13 12 19 19 H 1.08997 * 109.47111 * 183.94996 * 1 2 3 20 20 H 1.08992 * 109.47532 * 303.95468 * 1 2 3 21 21 H 1.09007 * 109.47205 * 63.95545 * 1 2 3 22 22 H 1.08998 * 109.47473 * 186.04473 * 3 2 1 23 23 H 1.09006 * 109.46800 * 306.04927 * 3 2 1 24 24 H 0.96999 * 120.00293 * 179.97438 * 7 6 4 25 25 H 1.09000 * 113.00829 * 75.58804 * 12 2 1 26 26 H 1.09002 * 113.76229 * 336.23848 * 13 12 2 27 27 H 1.09005 * 113.75703 * 107.49373 * 13 12 2 28 28 H 1.09001 * 115.54522 * 29.33462 * 15 14 13 29 29 H 1.08992 * 117.49864 * 359.97438 * 16 15 14 30 30 H 1.08998 * 117.49880 * 145.02597 * 16 15 14 31 31 H 1.08998 * 117.49964 * 214.98387 * 17 15 14 32 32 H 1.09010 * 117.50134 * 0.02562 * 17 15 14 33 33 H 1.09003 * 113.75437 * 220.98675 * 18 14 13 34 34 H 1.08998 * 113.85723 * 89.64375 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0739 1.5114 2.0484 6 6 2.0268 3.3494 1.5285 7 7 2.7119 4.0018 0.6150 8 14 1.5818 4.1872 3.1377 9 1 2.6584 3.9511 4.1329 10 1 1.4293 5.6467 2.9103 11 1 0.3040 3.6297 3.6493 12 6 1.9955 -0.7660 -1.1377 13 6 1.4827 -2.2162 -1.1986 14 7 2.8691 -2.5901 -1.5555 15 6 3.2867 -3.8050 -0.8431 16 6 4.4462 -3.6800 0.1472 17 6 4.6560 -4.3923 -1.1905 18 6 3.3872 -1.3730 -0.8849 19 1 -0.3633 -1.0252 0.0708 20 1 -0.3634 0.5739 0.8523 21 1 -0.3634 0.4512 -0.9234 22 1 3.0797 1.3444 -0.1082 23 1 1.5610 1.9273 -0.8309 24 1 2.9859 4.9181 0.7767 25 1 1.9150 -0.2321 -2.0846 26 1 1.1565 -2.6075 -0.2349 27 1 0.7608 -2.3936 -1.9959 28 1 2.4872 -4.5038 -0.5968 29 1 4.8995 -2.6964 0.2698 30 1 4.4098 -4.2966 1.0453 31 1 4.7576 -5.4774 -1.1725 32 1 5.2474 -3.8769 -1.9475 33 1 4.1887 -0.8773 -1.4327 34 1 3.6189 -1.5160 0.1706 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260289617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:58 Heat of formation + Delta-G solvation = 50.385579 kcal Electronic energy + Delta-G solvation = -14062.132097 eV Core-core repulsion = 11803.315533 eV Total energy + Delta-G solvation = -2258.816564 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.28258 -37.92304 -35.95445 -34.35181 -29.48648 -28.65572 -26.85122 -26.11849 -23.44057 -23.20441 -21.26424 -20.23446 -18.53288 -17.63929 -17.02489 -16.58949 -16.20603 -15.35850 -15.16768 -14.79424 -14.11707 -13.92039 -13.53461 -13.33525 -13.01951 -12.83747 -12.72864 -12.43963 -12.28231 -12.19248 -12.03396 -11.43854 -11.39237 -11.24043 -11.10768 -10.61568 -9.58174 -9.07136 -8.20461 -6.30880 1.41641 1.43122 1.54190 2.40115 2.65692 3.10403 3.13181 3.36604 3.52261 3.83661 4.03079 4.06736 4.12071 4.27740 4.45370 4.57397 4.65472 4.71682 4.78381 4.80641 4.88126 5.01225 5.03043 5.12645 5.22743 5.25589 5.29041 5.38889 5.65834 6.04980 6.09305 6.29304 6.62144 6.85487 7.39037 8.90896 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.046018 B = 0.006925 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.317315 B = 4042.447351 C = 4245.119962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.534 5.534 3 C 0.209 3.791 4 C -0.523 4.523 5 H 0.065 0.935 6 C 0.001 3.999 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.263 1.263 12 C 0.038 3.962 13 C 0.030 3.970 14 N -0.458 5.458 15 C -0.029 4.029 16 C -0.207 4.207 17 C -0.156 4.156 18 C 0.018 3.982 19 H 0.082 0.918 20 H 0.058 0.942 21 H 0.009 0.991 22 H 0.003 0.997 23 H -0.041 1.041 24 H 0.264 0.736 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.127 0.873 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -14.531 -1.504 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.259 5.259 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.083 0.917 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.187 1.187 12 C -0.072 4.072 13 C -0.098 4.098 14 N -0.180 5.180 15 C -0.138 4.138 16 C -0.245 4.245 17 C -0.194 4.194 18 C -0.110 4.110 19 H 0.101 0.899 20 H 0.077 0.923 21 H 0.028 0.972 22 H 0.021 0.979 23 H -0.024 1.024 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.118 0.882 28 H 0.144 0.856 29 H 0.106 0.894 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.249 -14.754 -1.805 14.866 hybrid contribution -0.309 1.485 0.577 1.623 sum -0.558 -13.268 -1.228 13.337 Atomic orbital electron populations 1.22192 0.87363 1.01545 0.99746 1.62345 1.08335 1.15303 1.39918 1.19345 0.93715 0.83805 0.94904 1.21467 1.34866 0.97499 1.02297 0.91713 1.25934 0.95002 0.98077 1.00710 1.70092 1.39418 1.11902 1.36226 0.85365 0.79011 0.77215 0.78918 1.19875 1.20855 1.18687 1.23551 0.96805 0.94316 0.92487 1.23957 0.92243 0.92166 1.01471 1.68479 1.05104 1.00292 1.44107 1.23314 0.93261 0.96312 1.00920 1.23457 1.03450 1.02737 0.94870 1.23050 0.97883 1.00754 0.97697 1.24092 0.96769 0.91135 0.99032 0.89909 0.92310 0.97213 0.97882 1.02366 0.92702 0.93291 0.89680 0.88200 0.85557 0.89443 0.87257 0.86508 0.89469 0.90929 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.51 9.15 127.69 1.17 2.67 16 2 N -0.53 -23.14 4.72 -905.16 -4.27 -27.42 16 3 C 0.21 11.30 4.70 85.56 0.40 11.70 16 4 C -0.52 -29.79 8.46 25.60 0.22 -29.57 16 5 H 0.06 3.59 7.12 -2.91 -0.02 3.57 16 6 C 0.00 0.04 5.46 84.66 0.46 0.50 16 7 N -0.94 -56.92 13.29 21.45 0.28 -56.63 16 8 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 12 C 0.04 1.40 3.37 46.37 0.16 1.56 16 13 C 0.03 0.86 6.48 86.41 0.56 1.42 16 14 N -0.46 -13.40 6.49 -879.60 -5.71 -19.11 16 15 C -0.03 -0.69 5.82 44.91 0.26 -0.43 16 16 C -0.21 -4.78 9.25 30.59 0.28 -4.50 16 17 C -0.16 -3.27 10.46 30.59 0.32 -2.95 16 18 C 0.02 0.63 6.61 86.34 0.57 1.20 16 19 H 0.08 2.50 7.02 -2.39 -0.02 2.49 16 20 H 0.06 2.41 6.76 -2.39 -0.02 2.39 16 21 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 22 H 0.00 0.18 7.95 -2.39 -0.02 0.16 16 23 H -0.04 -2.45 8.12 -2.38 -0.02 -2.47 16 24 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 25 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 26 H 0.09 2.31 7.61 -2.39 -0.02 2.29 16 27 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 28 H 0.13 2.62 8.03 -2.39 -0.02 2.60 16 29 H 0.09 2.34 6.08 -2.39 -0.01 2.32 16 30 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.08 2.94 6.07 -2.39 -0.01 2.93 16 Total: -1.00 -63.24 275.16 -2.22 -65.46 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.06 Total: 9.75 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 4.40 Total: -18.39 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -9.70 Total: -103.16 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -63.24 -2.22 -65.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.849 kcal (2) G-P(sol) polarization free energy of solvation -63.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds