Wall clock time and date at job start Mon Mar 30 2020 02:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47362 * 2 1 4 4 H 1.08997 * 109.47260 * 305.57067 * 3 2 1 5 5 C 1.52999 * 109.47138 * 185.57089 * 3 2 1 6 6 C 1.50699 * 109.47096 * 64.99819 * 5 3 2 7 7 H 1.08000 * 120.00351 * 0.02562 * 6 5 3 8 8 C 1.37873 * 120.00089 * 180.02562 * 6 5 3 9 9 N 1.31511 * 120.00310 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00074 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47030 * 60.00349 * 10 8 6 12 12 H 1.48497 * 109.47140 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47150 * 300.00218 * 10 8 6 14 14 C 1.53005 * 109.47130 * 65.57053 * 3 2 1 15 15 C 1.52994 * 109.46874 * 185.87554 * 14 3 2 16 16 C 1.52998 * 109.47318 * 180.02562 * 15 14 3 17 17 C 1.53003 * 109.46855 * 59.99825 * 16 15 14 18 18 C 1.52994 * 109.47301 * 300.00185 * 17 16 15 19 19 C 1.52994 * 109.46958 * 65.87787 * 14 3 2 20 20 H 1.08998 * 109.47822 * 174.10115 * 1 2 3 21 21 H 1.09004 * 109.47084 * 294.10204 * 1 2 3 22 22 H 1.09004 * 109.47306 * 54.09821 * 1 2 3 23 23 H 1.08996 * 109.46707 * 239.99744 * 2 1 3 24 24 H 1.08995 * 109.46558 * 120.00017 * 2 1 3 25 25 H 1.09003 * 109.47586 * 185.00077 * 5 3 2 26 26 H 1.08998 * 109.47176 * 305.00443 * 5 3 2 27 27 H 0.96999 * 120.00723 * 179.97438 * 9 8 6 28 28 H 1.08997 * 109.47138 * 305.87281 * 14 3 2 29 29 H 1.09001 * 109.47519 * 60.00110 * 15 14 3 30 30 H 1.08998 * 109.47386 * 300.00194 * 15 14 3 31 31 H 1.08996 * 109.47972 * 179.97438 * 16 15 14 32 32 H 1.09007 * 109.46962 * 300.00253 * 16 15 14 33 33 H 1.08998 * 109.46947 * 60.00510 * 17 16 15 34 34 H 1.09003 * 109.47165 * 180.02562 * 17 16 15 35 35 H 1.09007 * 109.47311 * 300.00059 * 18 17 16 36 36 H 1.09001 * 109.47519 * 180.02562 * 18 17 16 37 37 H 1.09003 * 109.47071 * 300.00018 * 19 14 3 38 38 H 1.09007 * 109.47648 * 59.99715 * 19 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5976 1.9843 -0.8359 5 6 3.5636 1.4446 -0.1400 6 6 3.9451 0.8868 -1.4870 7 1 3.1776 0.5635 -2.1747 8 6 5.2739 0.7893 -1.8416 9 7 6.2085 1.1825 -1.0042 10 14 5.7467 0.0985 -3.5116 11 1 5.1507 0.9385 -4.5815 12 1 7.2254 0.1005 -3.6475 13 1 5.2397 -1.2919 -3.6337 14 6 1.6476 2.1222 1.3134 15 6 2.0276 3.6030 1.2546 16 6 1.6358 4.2827 2.5681 17 6 2.3736 3.6125 3.7289 18 6 1.9937 2.1317 3.7877 19 6 2.3850 1.4522 2.4745 20 1 -0.3635 -1.0222 -0.1056 21 1 -0.3633 0.4197 0.9381 22 1 -0.3634 0.6026 -0.8325 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8900 25 1 3.9353 2.4655 -0.0510 26 1 4.0016 0.8287 0.6454 27 1 7.1434 1.1135 -1.2534 28 1 0.5721 2.0287 1.4636 29 1 1.5023 4.0804 0.4273 30 1 3.1031 3.6965 1.1042 31 1 1.9068 5.3376 2.5265 32 1 0.5602 4.1892 2.7189 33 1 3.4490 3.7060 3.5782 34 1 2.0942 4.0964 4.6648 35 1 0.9181 2.0382 3.9385 36 1 2.5189 1.6543 4.6150 37 1 2.1143 0.3971 2.5164 38 1 3.4606 1.5456 2.3242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260310678.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:32 Heat of formation + Delta-G solvation = -55.483109 kcal Electronic energy + Delta-G solvation = -14768.279040 eV Core-core repulsion = 12608.412008 eV Total energy + Delta-G solvation = -2159.867032 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.78793 -35.06969 -32.48336 -30.46116 -30.04211 -28.35574 -24.72491 -22.48595 -22.05415 -21.71050 -19.70391 -17.88924 -16.32051 -15.09961 -14.48685 -13.97046 -13.77495 -13.62461 -13.42942 -12.88110 -12.71829 -11.97915 -11.78655 -11.69000 -11.49495 -11.07441 -10.87451 -10.80514 -10.70058 -10.60168 -10.30442 -10.29672 -9.78960 -9.76173 -9.50300 -9.18637 -8.81720 -8.74904 -8.24228 -5.92416 -3.92738 3.36491 3.40997 3.43489 4.51687 5.12284 5.16930 5.21466 5.42784 5.62738 5.69002 5.78000 5.79442 5.91016 5.98121 5.99240 6.02502 6.03156 6.12050 6.33515 6.37284 6.48806 6.52949 6.57176 6.60402 6.69022 6.77734 6.82715 6.90771 6.98020 7.15051 7.26673 7.39653 7.79593 7.97288 8.09896 8.54482 9.14051 9.69948 11.18725 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.032863 B = 0.008957 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.811892 B = 3125.321670 C = 3578.435792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.078 4.078 4 H 0.053 0.947 5 C 0.027 3.973 6 C -0.514 4.514 7 H 0.053 0.947 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 C -0.078 4.078 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.117 4.117 20 H 0.040 0.960 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.017 0.983 26 H 0.019 0.981 27 H 0.259 0.741 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 2.363 7.002 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.096 4.096 4 H 0.071 0.929 5 C -0.009 4.009 6 C -0.552 4.552 7 H 0.071 0.929 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.096 4.096 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.154 4.154 20 H 0.060 0.940 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.894 2.378 7.019 11.578 hybrid contribution 0.379 -0.382 -0.969 1.108 sum -8.516 1.997 6.050 10.635 Atomic orbital electron populations 1.21860 0.98000 1.00106 1.00803 1.21536 0.93207 0.98132 1.02165 1.21253 0.99916 0.94003 0.94444 0.92888 1.19203 0.88281 0.97033 0.96408 1.21283 0.91518 1.40998 1.01406 0.92865 1.24997 0.96837 0.95837 0.96786 1.69947 1.00068 1.48103 1.35531 0.86754 0.77201 0.79616 0.84987 1.20399 1.21421 1.20376 1.21169 0.98307 0.94289 0.95844 1.21636 1.02428 0.95522 0.95808 1.21528 0.99494 0.98689 0.95698 1.21518 1.00680 0.95815 0.97558 1.21536 1.00285 0.95536 0.98152 1.21670 1.01797 0.98705 0.93232 0.94041 0.93482 0.93431 0.91279 0.92830 0.96432 0.96318 0.93151 0.92762 0.92758 0.90941 0.92820 0.92832 0.91924 0.93065 0.92895 0.92821 0.92374 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.54 37.16 0.35 -1.99 16 2 C -0.11 -2.14 5.18 -26.73 -0.14 -2.28 16 3 C -0.08 -1.58 1.57 -90.62 -0.14 -1.72 16 4 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 5 C 0.03 0.69 3.63 -27.88 -0.10 0.59 16 6 C -0.51 -14.39 8.33 -34.44 -0.29 -14.67 16 7 H 0.05 1.46 7.08 -52.49 -0.37 1.09 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C -0.08 -1.34 1.85 -90.62 -0.17 -1.51 16 15 C -0.12 -1.95 4.98 -26.73 -0.13 -2.08 16 16 C -0.12 -1.63 5.92 -26.73 -0.16 -1.78 16 17 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 18 C -0.12 -1.65 5.92 -26.76 -0.16 -1.81 16 19 C -0.12 -1.97 4.47 -26.76 -0.12 -2.09 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.68 6.75 -51.93 -0.35 0.33 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 1.45 6.81 -51.93 -0.35 1.09 16 24 H 0.05 1.00 6.36 -51.93 -0.33 0.67 16 25 H 0.02 0.47 6.38 -51.93 -0.33 0.14 16 26 H 0.02 0.50 6.64 -51.93 -0.35 0.16 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 28 H 0.05 0.88 6.46 -51.93 -0.34 0.54 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.38 6.49 -51.93 -0.34 1.04 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.97 6.48 -51.93 -0.34 0.63 16 38 H 0.07 1.44 6.45 -51.93 -0.33 1.10 16 LS Contribution 282.53 15.07 4.26 4.26 Total: -1.00 -28.72 282.53 -8.12 -36.85 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.79 Total: -2.11 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -1.31 Total: -29.61 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.72 -8.12 -36.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310678.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.637 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds