Wall clock time and date at job start Mon Mar 30 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38734 * 120.22873 * 2 1 4 4 N 1.31429 * 121.02736 * 179.72499 * 3 2 1 5 5 C 1.33655 * 121.54470 * 0.58718 * 4 3 2 6 6 C 1.41406 * 119.82032 * 179.70309 * 5 4 3 7 7 H 1.08002 * 120.00364 * 179.97438 * 6 5 4 8 8 C 1.40028 * 120.00267 * 359.97438 * 6 5 4 9 9 N 1.30739 * 119.99901 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00435 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47292 * 89.99814 * 10 8 6 12 12 H 1.48501 * 109.47471 * 210.00028 * 10 8 6 13 13 H 1.48502 * 109.47091 * 330.00211 * 10 8 6 14 14 C 1.40571 * 120.35549 * 359.68262 * 5 4 3 15 15 C 1.50704 * 120.51752 * 179.97438 * 14 5 4 16 16 C 1.38343 * 118.96488 * 0.02562 * 14 5 4 17 17 Cl 1.73599 * 120.71786 * 179.97438 * 16 14 5 18 18 H 1.09002 * 109.47152 * 269.71814 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.71914 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.71895 * 1 2 3 21 21 H 1.08000 * 119.48725 * 0.02562 * 3 2 1 22 22 H 0.96998 * 120.00651 * 180.02562 * 9 8 6 23 23 H 1.08996 * 109.46753 * 270.02457 * 15 14 5 24 24 H 1.09002 * 109.46726 * 30.02295 * 15 14 5 25 25 H 1.09004 * 109.46849 * 150.02130 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2055 1.1987 0.0000 4 7 3.5196 1.2170 0.0054 5 6 4.2347 0.0879 -0.0006 6 6 5.6474 0.1502 -0.0008 7 1 6.2282 -0.7604 -0.0052 8 6 6.2935 1.3925 0.0047 9 7 5.5906 2.4948 0.0106 10 14 8.1597 1.4748 0.0052 11 1 8.6543 1.5027 -1.3948 12 1 8.6008 2.7048 0.7106 13 1 8.7076 0.2822 0.6999 14 6 3.5900 -1.1613 -0.0062 15 6 4.3927 -2.4367 -0.0135 16 6 2.2072 -1.2015 -0.0060 17 17 1.3641 -2.7190 -0.0135 18 1 -0.3633 -0.0051 1.0277 19 1 -0.3633 -0.8875 -0.5182 20 1 -0.3633 0.8925 -0.5095 21 1 1.6609 2.1313 0.0004 22 1 6.0380 3.3554 0.0140 23 1 4.5854 -2.7387 -1.0429 24 1 5.3398 -2.2729 0.5005 25 1 3.8333 -3.2210 0.4966 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260492308.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:10 Heat of formation + Delta-G solvation = 7.340572 kcal Electronic energy + Delta-G solvation = -11694.760667 eV Core-core repulsion = 9505.401845 eV Total energy + Delta-G solvation = -2189.358823 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.046 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.56172 -35.69917 -33.92708 -32.23745 -31.41420 -27.70352 -26.21883 -24.19666 -21.48169 -19.82474 -17.63660 -16.03534 -14.83816 -14.56563 -13.51046 -13.19129 -12.84718 -12.34532 -12.29546 -11.76675 -11.63816 -11.48629 -11.27505 -11.17950 -10.94180 -10.93534 -10.44894 -10.08278 -9.63595 -9.36446 -7.90979 -7.71272 -7.54073 -6.53021 -4.61184 2.59177 2.69265 3.03264 3.05248 3.09893 3.11690 3.87019 4.60587 5.66733 5.86340 6.00818 6.07787 6.29834 6.37389 6.49899 6.58660 6.61212 6.68441 6.74420 7.07234 7.20757 7.41648 7.46994 7.77657 8.11034 8.50416 8.77423 9.96042 10.19338 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.047285 B = 0.010386 C = 0.008569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.014722 B = 2695.363951 C = 3266.931633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.286 4.286 3 C 0.139 3.861 4 N -0.480 5.480 5 C 0.262 3.738 6 C -0.421 4.421 7 H 0.091 0.909 8 C 0.067 3.933 9 N -0.711 5.711 10 Si 0.910 3.090 11 H -0.268 1.268 12 H -0.275 1.275 13 H -0.260 1.260 14 C -0.236 4.236 15 C -0.083 4.083 16 C 0.043 3.957 17 Cl -0.112 7.112 18 H 0.044 0.956 19 H 0.050 0.950 20 H 0.049 0.951 21 H 0.126 0.874 22 H 0.275 0.725 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 -3.390 -0.021 4.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.292 4.292 3 C -0.028 4.028 4 N -0.192 5.192 5 C 0.137 3.863 6 C -0.452 4.452 7 H 0.109 0.891 8 C -0.159 4.159 9 N -0.331 5.331 10 Si 0.733 3.267 11 H -0.193 1.193 12 H -0.200 1.200 13 H -0.184 1.184 14 C -0.242 4.242 15 C -0.140 4.140 16 C 0.011 3.989 17 Cl -0.083 7.083 18 H 0.063 0.937 19 H 0.069 0.931 20 H 0.068 0.932 21 H 0.143 0.857 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.708 -2.494 -0.007 3.022 hybrid contribution 0.169 -0.796 -0.018 0.814 sum -1.539 -3.290 -0.025 3.632 Atomic orbital electron populations 1.20306 0.92487 1.00792 1.00100 1.20020 0.95614 0.92597 1.20937 1.22456 0.91576 0.94637 0.94168 1.68730 1.04525 1.29002 1.16897 1.18422 0.93810 0.85020 0.89026 1.19728 0.90075 0.93624 1.41752 0.89104 1.26118 1.00769 0.95454 0.93582 1.70124 1.37013 0.98371 1.27628 0.86288 0.82008 0.79022 0.79358 1.19272 1.20008 1.18388 1.20456 0.91050 0.96982 1.15701 1.20376 0.99229 0.94015 1.00372 1.20635 0.91389 0.84082 1.02810 1.98244 1.78855 1.34141 1.97069 0.93680 0.93081 0.93246 0.85656 0.91382 0.93374 0.91882 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 9.67 36.01 0.35 -1.09 15 2 C -0.29 -6.38 5.92 -104.13 -0.62 -7.00 15 3 C 0.14 3.32 10.85 -17.54 -0.19 3.13 15 4 N -0.48 -13.04 7.87 -11.14 -0.09 -13.12 15 5 C 0.26 7.01 6.55 -84.99 -0.56 6.45 15 6 C -0.42 -10.89 8.68 -37.71 -0.33 -11.22 15 7 H 0.09 2.18 6.02 -52.49 -0.32 1.86 15 8 C 0.07 1.65 5.50 -17.35 -0.10 1.56 15 9 N -0.71 -18.45 11.46 55.55 0.64 -17.81 15 10 Si 0.91 18.02 29.56 -169.99 -5.02 13.00 15 11 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 12 H -0.28 -5.35 7.11 56.52 0.40 -4.95 15 13 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 14 C -0.24 -5.73 5.96 -103.70 -0.62 -6.34 15 15 C -0.08 -1.71 9.15 36.01 0.33 -1.38 15 16 C 0.04 0.98 6.35 -39.24 -0.25 0.73 15 17 Cl -0.11 -2.15 25.94 -51.86 -1.35 -3.49 15 18 H 0.04 0.77 8.14 -51.93 -0.42 0.34 15 19 H 0.05 0.89 7.00 -51.93 -0.36 0.52 15 20 H 0.05 0.80 8.09 -51.93 -0.42 0.38 15 21 H 0.13 2.66 8.06 -52.49 -0.42 2.24 15 22 H 0.27 6.44 8.29 -40.82 -0.34 6.10 15 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.06 1.28 6.34 -51.93 -0.33 0.95 15 25 H 0.05 0.89 7.01 -51.93 -0.36 0.53 15 LS Contribution 231.87 15.07 3.49 3.49 Total: -1.00 -27.59 231.87 -6.50 -34.09 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -2.20 Total: -0.99 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.98 Total: -15.17 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.55 Total: -30.93 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.02 Total: 13.00 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -1.35 Total: -3.49 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -27.59 -6.50 -34.09 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260492308.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.432 kcal (2) G-P(sol) polarization free energy of solvation -27.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds