Wall clock time and date at job start Mon Mar 30 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30578 * 1 3 3 Si 1.86802 * 120.00138 * 2 1 4 4 H 1.48503 * 109.47033 * 274.97854 * 3 2 1 5 5 H 1.48504 * 109.47030 * 34.97449 * 3 2 1 6 6 H 1.48499 * 109.47266 * 154.97636 * 3 2 1 7 7 C 1.40423 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99930 * 186.01087 * 7 2 1 9 9 C 1.39936 * 120.00037 * 6.00473 * 7 2 1 10 10 C 1.39376 * 126.44041 * 174.57657 * 9 7 2 11 11 C 1.39661 * 107.57874 * 180.15727 * 10 9 7 12 12 C 1.50699 * 125.68971 * 179.83425 * 11 10 9 13 13 O 1.43744 * 109.62999 * 329.08976 * 12 11 10 14 14 C 1.44787 * 104.81499 * 215.80146 * 13 12 11 15 15 C 1.54911 * 101.71845 * 36.10344 * 14 13 12 16 16 O 1.43361 * 109.63691 * 209.72036 * 12 11 10 17 17 N 1.30593 * 108.62563 * 359.57708 * 11 10 9 18 18 O 1.35128 * 126.44301 * 354.27418 * 9 7 2 19 19 H 0.97004 * 120.00286 * 0.02562 * 1 2 3 20 20 H 1.08007 * 126.21166 * 0.02562 * 10 9 7 21 21 H 1.09003 * 109.62141 * 89.32826 * 12 11 10 22 22 H 1.08998 * 110.97984 * 277.99317 * 14 13 12 23 23 H 1.09006 * 111.01286 * 154.22186 * 14 13 12 24 24 H 1.09005 * 110.69760 * 206.03778 * 15 14 13 25 25 H 1.09005 * 110.84209 * 82.90738 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 2.3821 2.1071 -1.3948 5 1 1.4938 2.6201 0.8026 6 1 3.5860 1.4121 0.5922 7 6 2.0079 -1.2161 0.0005 8 1 3.0835 -1.2186 0.0985 9 6 1.3139 -2.4247 -0.1257 10 6 1.8770 -3.6939 -0.2471 11 6 0.8296 -4.6118 -0.3512 12 6 0.9798 -6.1036 -0.5032 13 8 2.1901 -6.3964 -1.2213 14 6 1.8689 -7.5519 -2.0324 15 6 0.3968 -7.2649 -2.4200 16 8 -0.1328 -6.6272 -1.2402 17 7 -0.3018 -3.9625 -0.2892 18 8 -0.0281 -2.5813 -0.1471 19 1 -0.4851 0.8401 -0.0004 20 1 2.9319 -3.9253 -0.2607 21 1 1.0189 -6.5697 0.4814 22 1 1.9475 -8.4707 -1.4513 23 1 2.5038 -7.5969 -2.9175 24 1 -0.1350 -8.1936 -2.6275 25 1 0.3452 -6.5934 -3.2770 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260573379.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:08 Heat of formation + Delta-G solvation = -79.157640 kcal Electronic energy + Delta-G solvation = -13676.412691 eV Core-core repulsion = 11042.593860 eV Total energy + Delta-G solvation = -2633.818831 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.80008 -40.95092 -36.13124 -35.95103 -34.08466 -31.61508 -30.75998 -27.61774 -26.46923 -24.22897 -22.29767 -21.28647 -19.53570 -18.38579 -17.62256 -17.27450 -16.63583 -16.18141 -15.88843 -15.54004 -14.88619 -14.50525 -14.37916 -13.82157 -13.77304 -13.26722 -13.02914 -12.67171 -12.53386 -11.96353 -11.55166 -11.47515 -11.23569 -11.13426 -10.80506 -9.72308 -8.97094 -6.97732 0.87844 1.36719 1.47222 1.58125 1.95295 2.11094 2.27329 2.59522 3.00923 3.11958 3.64027 3.79401 4.06946 4.19469 4.25823 4.51932 4.68403 4.72212 4.88317 4.92716 5.19220 5.22200 5.67220 5.91544 6.07556 6.32567 6.40926 7.21069 8.03867 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.071619 B = 0.007545 C = 0.007098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.866590 B = 3710.268476 C = 3944.038101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.019 3.981 3 Si 1.021 2.979 4 H -0.255 1.255 5 H -0.260 1.260 6 H -0.242 1.242 7 C -0.442 4.442 8 H 0.126 0.874 9 C 0.193 3.807 10 C -0.457 4.457 11 C 0.082 3.918 12 C 0.324 3.676 13 O -0.384 6.384 14 C 0.014 3.986 15 C 0.009 3.991 16 O -0.395 6.395 17 N -0.447 5.447 18 O -0.118 6.118 19 H 0.304 0.696 20 H 0.131 0.869 21 H 0.120 0.880 22 H 0.108 0.892 23 H 0.137 0.863 24 H 0.140 0.860 25 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.491 -7.277 -3.491 9.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.202 4.202 3 Si 0.837 3.163 4 H -0.180 1.180 5 H -0.184 1.184 6 H -0.165 1.165 7 C -0.472 4.472 8 H 0.144 0.856 9 C 0.134 3.866 10 C -0.487 4.487 11 C -0.080 4.080 12 C 0.227 3.773 13 O -0.304 6.304 14 C -0.061 4.061 15 C -0.066 4.066 16 O -0.316 6.316 17 N -0.209 5.209 18 O -0.122 6.122 19 H 0.116 0.884 20 H 0.149 0.851 21 H 0.137 0.863 22 H 0.126 0.874 23 H 0.154 0.846 24 H 0.157 0.843 25 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.901 -7.142 -3.428 8.830 hybrid contribution 0.803 0.553 -0.032 0.975 sum 4.704 -6.589 -3.460 8.804 Atomic orbital electron populations 1.69784 1.10140 1.32812 1.28753 1.27628 0.95845 1.06512 0.90246 0.84631 0.78983 0.72674 0.80055 1.17956 1.18412 1.16458 1.19685 0.96561 0.88028 1.42911 0.85631 1.20919 0.82703 0.95659 0.87327 1.21767 0.98955 0.89858 1.38143 1.23150 0.92807 0.97239 0.94778 1.21900 0.75510 0.85291 0.94590 1.89291 1.31144 1.49400 1.60544 1.24796 0.95326 0.89180 0.96764 1.24560 0.95088 0.99304 0.87694 1.88969 1.30542 1.75030 1.37066 1.79936 1.19349 0.85534 1.36057 1.89294 1.22073 1.21314 1.79514 0.88428 0.85140 0.86321 0.87421 0.84566 0.84268 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.73 12.05 21.91 0.26 -42.47 15 2 C 0.02 0.95 5.50 85.41 0.47 1.42 15 3 Si 1.02 35.42 29.57 68.60 2.03 37.45 15 4 H -0.26 -8.49 7.11 99.48 0.71 -7.78 15 5 H -0.26 -8.49 7.11 99.48 0.71 -7.79 15 6 H -0.24 -7.81 7.11 99.48 0.71 -7.10 15 7 C -0.44 -24.01 9.34 23.21 0.22 -23.79 15 8 H 0.13 6.11 7.86 -2.91 -0.02 6.09 15 9 C 0.19 11.70 6.88 22.96 0.16 11.86 15 10 C -0.46 -25.64 10.39 22.89 0.24 -25.40 15 11 C 0.08 4.43 6.75 43.09 0.29 4.72 15 12 C 0.32 13.36 4.55 71.24 0.32 13.68 15 13 O -0.38 -13.89 11.00 -126.22 -1.39 -15.27 15 14 C 0.01 0.33 7.95 72.64 0.58 0.91 15 15 C 0.01 0.24 8.07 72.64 0.59 0.82 15 16 O -0.40 -15.44 11.10 -126.22 -1.40 -16.84 15 17 N -0.45 -27.25 12.78 -47.63 -0.61 -27.85 15 18 O -0.12 -7.67 10.52 26.33 0.28 -7.40 15 19 H 0.30 14.35 8.29 -92.71 -0.77 13.58 15 20 H 0.13 6.78 8.06 -2.91 -0.02 6.76 15 21 H 0.12 4.34 8.14 -2.39 -0.02 4.32 15 22 H 0.11 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.14 2.27 8.14 -2.38 -0.02 2.25 15 24 H 0.14 2.44 8.14 -2.38 -0.02 2.42 15 25 H 0.06 1.79 8.14 -2.38 -0.02 1.77 15 Total: -1.00 -75.13 232.68 3.24 -71.89 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 1.21 Total: 16.27 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 2.86 Total: -15.78 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -0.34 Total: -70.32 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -2.51 Total: -39.51 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.45 kcal Total: -75.13 3.24 -71.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573379.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.264 kcal (2) G-P(sol) polarization free energy of solvation -75.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds