Wall clock time and date at job start Mon Mar 30 2020 02:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47116 * 2 1 4 4 C 1.53009 * 109.47041 * 240.00619 * 2 1 3 5 5 C 1.50700 * 109.47229 * 64.99570 * 4 2 1 6 6 H 1.08002 * 119.99892 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99682 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99965 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99614 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47098 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46886 * 120.00415 * 9 7 5 12 12 H 1.48507 * 109.47053 * 239.99907 * 9 7 5 13 13 C 1.52997 * 109.47483 * 120.00330 * 2 1 3 14 14 C 1.45537 * 108.89534 * 176.60444 * 13 2 1 15 15 C 1.54242 * 112.40776 * 182.68696 * 14 13 2 16 16 C 1.50466 * 108.52279 * 280.01609 * 15 14 13 17 17 C 1.54071 * 112.50311 * 94.14808 * 16 15 14 18 18 C 1.54069 * 112.81407 * 318.28532 * 17 16 15 19 19 C 1.50469 * 112.49899 * 318.28307 * 18 17 16 20 20 H 1.09000 * 109.46841 * 186.99728 * 1 2 3 21 21 H 1.08997 * 109.46918 * 306.99206 * 1 2 3 22 22 H 1.09000 * 109.47200 * 66.99392 * 1 2 3 23 23 H 1.08999 * 109.46818 * 184.99995 * 4 2 1 24 24 H 1.09001 * 109.46873 * 304.99697 * 4 2 1 25 25 H 0.97010 * 119.99876 * 179.97438 * 8 7 5 26 26 H 1.08998 * 108.79195 * 58.05109 * 13 2 1 27 27 H 1.09004 * 108.89519 * 61.93762 * 14 13 2 28 28 H 1.08995 * 108.90114 * 303.44303 * 14 13 2 29 29 H 1.09007 * 109.62534 * 39.72577 * 15 14 13 30 30 H 1.09001 * 109.63428 * 160.30287 * 15 14 13 31 31 H 1.09007 * 108.88116 * 214.92781 * 16 15 14 32 32 H 1.08998 * 108.87673 * 333.36711 * 16 15 14 33 33 H 1.08995 * 108.81547 * 197.42509 * 17 16 15 34 34 H 1.09005 * 108.72251 * 79.08251 * 17 16 15 35 35 H 1.08995 * 108.87561 * 197.50023 * 18 17 16 36 36 H 1.09006 * 108.87605 * 79.05647 * 18 17 16 37 37 H 1.09003 * 109.62877 * 334.43983 * 19 18 17 38 38 H 1.08999 * 109.63031 * 213.86251 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4767 6 1 1.0805 0.9747 -2.3756 7 6 1.9923 -0.4020 -3.7284 8 7 2.6746 -1.5195 -3.8513 9 14 1.4973 0.5624 -5.2497 10 1 0.7411 1.7740 -4.8434 11 1 2.7151 0.9670 -5.9971 12 1 0.6430 -0.2870 -6.1181 13 6 2.0401 -0.7213 1.2491 14 6 3.4931 -0.7850 1.1963 15 6 4.0916 -1.5576 2.3896 16 6 4.1278 -0.6413 3.5825 17 6 2.8833 -0.7902 4.4786 18 6 1.5777 -0.9198 3.6709 19 6 1.5293 0.0234 2.4995 20 1 -0.3633 -1.0200 0.1252 21 1 -0.3633 0.6183 0.8208 22 1 -0.3633 0.4016 -0.9459 23 1 3.1263 -0.7994 -1.2057 24 1 1.6054 -1.7197 -1.2953 25 1 2.9212 -1.8428 -4.7321 26 1 1.6424 -1.7361 1.2556 27 1 3.8912 0.2298 1.1975 28 1 3.7915 -1.2781 0.2712 29 1 3.4702 -2.4249 2.6129 30 1 5.1034 -1.8815 2.1459 31 1 5.0163 -0.8657 4.1729 32 1 4.1899 0.3895 3.2337 33 1 2.8104 0.0829 5.1269 34 1 3.0029 -1.6788 5.0985 35 1 0.7341 -0.7095 4.3282 36 1 1.4901 -1.9425 3.3039 37 1 2.1657 0.8860 2.6974 38 1 0.5029 0.3520 2.3362 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260582630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:11 Heat of formation + Delta-G solvation = -46.203554 kcal Electronic energy + Delta-G solvation = -14633.717535 eV Core-core repulsion = 12474.252895 eV Total energy + Delta-G solvation = -2159.464640 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.10290 -35.14372 -32.48081 -31.87815 -30.01017 -27.00238 -25.04333 -23.93565 -22.66830 -20.36074 -18.97631 -18.83972 -16.42897 -15.36654 -14.66269 -14.46543 -13.91788 -13.56399 -13.13981 -13.04053 -12.69229 -12.05100 -11.84592 -11.80255 -11.47249 -11.13729 -10.85207 -10.81936 -10.52797 -10.42511 -10.29895 -10.10702 -10.09790 -9.77654 -9.64171 -9.49307 -8.83224 -8.74594 -8.25984 -5.93788 -3.94205 3.33744 3.41386 3.45395 4.50743 4.89594 5.01191 5.08093 5.41149 5.42501 5.49746 5.56101 5.65137 5.74760 5.82110 5.94021 6.06227 6.12630 6.32005 6.33177 6.35917 6.41042 6.42544 6.44553 6.53337 6.69100 6.76427 6.81545 6.87088 6.98661 7.18668 7.25920 7.32851 7.78082 7.94879 8.08041 8.52716 9.12853 9.68720 11.17575 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.052682 B = 0.007161 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.363825 B = 3909.329498 C = 4234.367871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.053 0.947 4 C 0.024 3.976 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.078 4.078 14 C -0.117 4.117 15 C -0.118 4.118 16 C -0.117 4.117 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.117 4.117 20 H 0.041 0.959 21 H 0.033 0.967 22 H 0.061 0.939 23 H 0.022 0.978 24 H 0.013 0.987 25 H 0.258 0.742 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.100 1.193 13.777 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.071 0.929 4 C -0.013 4.013 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.096 4.096 14 C -0.154 4.154 15 C -0.155 4.155 16 C -0.154 4.154 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.154 4.154 20 H 0.060 0.940 21 H 0.052 0.948 22 H 0.080 0.920 23 H 0.040 0.960 24 H 0.031 0.969 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.173 1.083 13.650 13.694 hybrid contribution -0.218 0.440 -0.948 1.067 sum -0.045 1.523 12.702 12.793 Atomic orbital electron populations 1.21798 0.96768 1.00067 1.00540 1.21284 0.94792 0.99120 0.95117 0.92884 1.19251 0.96366 0.95322 0.90377 1.21339 1.34317 1.08186 0.91193 0.92689 1.25014 0.95436 0.95091 0.99025 1.69976 1.39340 1.21231 1.23151 0.86615 0.78246 0.80156 0.83461 1.19816 1.21133 1.21134 1.20121 0.95594 0.99186 0.94708 1.20656 0.96083 1.00221 0.98476 1.21344 1.00388 0.98538 0.95249 1.21345 0.96824 1.00461 0.96778 1.21895 0.94762 1.00769 0.97716 1.21339 0.96375 1.00485 0.97221 1.21498 1.01284 0.98180 0.94445 0.94022 0.94840 0.92037 0.95989 0.96853 0.93226 0.92318 0.92770 0.90533 0.92068 0.92552 0.93175 0.92165 0.92917 0.92956 0.93150 0.92218 0.92361 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.64 37.16 0.32 -2.27 16 2 C -0.08 -1.74 1.90 -90.62 -0.17 -1.91 16 3 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.02 0.61 4.11 -27.88 -0.11 0.49 16 5 C -0.51 -14.47 8.31 -34.44 -0.29 -14.76 16 6 H 0.05 1.52 7.09 -52.49 -0.37 1.15 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C -0.08 -1.34 1.33 -93.49 -0.12 -1.46 16 14 C -0.12 -1.98 4.21 -29.60 -0.12 -2.11 16 15 C -0.12 -1.65 5.61 -27.35 -0.15 -1.80 16 16 C -0.12 -1.44 5.31 -27.44 -0.15 -1.58 16 17 C -0.11 -1.31 5.85 -25.61 -0.15 -1.46 16 18 C -0.12 -1.48 5.31 -27.44 -0.15 -1.62 16 19 C -0.12 -1.70 4.91 -27.35 -0.13 -1.83 16 20 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.03 0.55 6.37 -51.93 -0.33 0.22 16 22 H 0.06 1.29 6.78 -51.93 -0.35 0.94 16 23 H 0.02 0.59 5.99 -51.93 -0.31 0.28 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.06 1.05 7.47 -51.93 -0.39 0.67 16 27 H 0.05 0.92 7.47 -51.93 -0.39 0.53 16 28 H 0.08 1.50 5.80 -51.93 -0.30 1.20 16 29 H 0.06 0.85 6.98 -51.93 -0.36 0.49 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.77 6.63 -51.93 -0.34 0.43 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.79 6.63 -51.93 -0.34 0.44 16 37 H 0.06 0.84 6.98 -51.93 -0.36 0.47 16 38 H 0.06 0.95 5.77 -51.93 -0.30 0.65 16 LS Contribution 278.50 15.07 4.20 4.20 Total: -1.00 -29.08 278.50 -8.09 -37.17 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -6.67 Total: -2.95 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: -1.33 Total: -28.84 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.74 Total: -26.44 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.08 -8.09 -37.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260582630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.038 kcal (2) G-P(sol) polarization free energy of solvation -29.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds