Wall clock time and date at job start Mon Mar 30 2020 02:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47961 * 111.00089 * 2 1 4 4 C 1.53939 * 86.17934 * 222.42066 * 3 2 1 5 5 N 1.46899 * 113.73494 * 138.07808 * 4 3 2 6 6 C 1.47482 * 110.99948 * 80.53997 * 5 4 3 7 7 C 1.53627 * 87.95212 * 138.65259 * 6 5 4 8 8 C 1.47481 * 111.00122 * 176.50851 * 5 4 3 9 9 H 1.09002 * 113.47602 * 336.12437 * 8 5 4 10 10 C 1.52996 * 113.47480 * 106.52699 * 8 5 4 11 11 C 1.50704 * 109.46823 * 185.03005 * 10 8 5 12 12 H 1.07990 * 120.00299 * 355.59142 * 11 10 8 13 13 C 1.37884 * 119.99606 * 175.58561 * 11 10 8 14 14 N 1.31511 * 119.99823 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99659 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47365 * 270.00138 * 15 13 11 17 17 H 1.48504 * 109.47252 * 30.00568 * 15 13 11 18 18 H 1.48499 * 109.46898 * 150.00351 * 15 13 11 19 19 C 1.47965 * 111.00011 * 260.63809 * 2 1 3 20 20 H 1.09003 * 109.47428 * 60.00160 * 1 2 3 21 21 H 1.08997 * 109.47188 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46915 * 299.99819 * 1 2 3 23 23 H 1.08996 * 113.76616 * 108.09718 * 3 2 1 24 24 H 1.09005 * 113.75827 * 336.73116 * 3 2 1 25 25 H 1.09000 * 113.72924 * 269.25039 * 4 3 2 26 26 H 1.09003 * 113.47734 * 253.46668 * 6 5 4 27 27 H 1.08997 * 113.48285 * 23.87268 * 6 5 4 28 28 H 1.09007 * 114.20477 * 220.39025 * 7 6 5 29 29 H 1.09002 * 114.17338 * 87.65577 * 7 6 5 30 30 H 1.09002 * 109.46948 * 65.03429 * 10 8 5 31 31 H 1.08998 * 109.47395 * 305.03084 * 10 8 5 32 32 H 0.97009 * 119.99460 * 179.97438 * 14 13 11 33 33 H 1.09006 * 113.75479 * 23.26493 * 19 2 1 34 34 H 1.08997 * 113.75572 * 251.90075 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8792 -1.0361 5 7 3.2514 1.8179 -2.1423 6 6 4.1884 2.8848 -1.7436 7 6 4.8455 2.7482 -3.1255 8 6 4.2979 1.3160 -3.0522 9 1 4.9835 0.6126 -2.5795 10 6 3.7512 0.8034 -4.3860 11 6 4.8742 0.2019 -5.1913 12 1 5.8884 0.2502 -4.8236 13 6 4.6065 -0.4103 -6.3974 14 7 3.3714 -0.4688 -6.8453 15 14 5.9984 -1.1553 -7.3959 16 1 6.5477 -0.1312 -8.3204 17 1 7.0705 -1.6211 -6.4799 18 1 5.4837 -2.3058 -8.1810 19 6 1.9992 -0.2247 -1.3630 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 2.4459 1.6804 0.9482 24 1 1.3010 2.1198 -0.3941 25 1 3.9458 0.5068 -0.5954 26 1 3.7061 3.8494 -1.5849 27 1 4.8446 2.6014 -0.9207 28 1 5.9337 2.8113 -3.1111 29 1 4.3869 3.3623 -3.9005 30 1 3.3100 1.6318 -4.9403 31 1 2.9909 0.0449 -4.1997 32 1 3.1831 -0.8992 -7.6940 33 1 1.3009 0.0440 -2.1556 34 1 2.4459 -1.2089 -1.5036 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:58 Heat of formation + Delta-G solvation = 44.434141 kcal Electronic energy + Delta-G solvation = -14162.397218 eV Core-core repulsion = 11903.322580 eV Total energy + Delta-G solvation = -2259.074638 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.62440 -39.54167 -35.14192 -32.10751 -31.02214 -28.30004 -27.26806 -26.25970 -23.88827 -23.27529 -20.74515 -20.41804 -18.51674 -17.52359 -16.87632 -16.55020 -16.05256 -15.39001 -14.92964 -14.79208 -14.25417 -14.06121 -13.77519 -13.66660 -13.04607 -12.83859 -12.56863 -12.53616 -12.33083 -12.06962 -12.03412 -11.58520 -11.36004 -11.17464 -10.79777 -10.50763 -9.90125 -9.72989 -8.17654 -6.28340 1.40780 1.42088 1.52862 2.41408 2.89771 3.15111 3.19125 3.34934 3.83530 3.98492 4.04189 4.10948 4.23427 4.49405 4.49953 4.55691 4.60423 4.66261 4.74282 4.82901 4.92167 4.99565 5.02413 5.06770 5.24652 5.31929 5.37311 5.58163 5.64976 5.86693 5.99558 6.20110 6.40110 6.88739 7.40435 8.94318 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037221 B = 0.007923 C = 0.006941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.092467 B = 3533.376722 C = 4032.760654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.492 5.492 3 C 0.027 3.973 4 C 0.016 3.984 5 N -0.482 5.482 6 C 0.012 3.988 7 C -0.133 4.133 8 C 0.041 3.959 9 H 0.063 0.937 10 C 0.054 3.946 11 C -0.535 4.535 12 H 0.061 0.939 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.964 3.036 16 H -0.272 1.272 17 H -0.263 1.263 18 H -0.284 1.284 19 C 0.015 3.985 20 H 0.030 0.970 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.106 0.894 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.075 0.925 30 H -0.012 1.012 31 H -0.014 1.014 32 H 0.262 0.738 33 H 0.060 0.940 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.564 4.582 12.918 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.215 5.215 3 C -0.102 4.102 4 C -0.094 4.094 5 N -0.205 5.205 6 C -0.116 4.116 7 C -0.171 4.171 8 C -0.068 4.068 9 H 0.081 0.919 10 C 0.017 3.983 11 C -0.573 4.573 12 H 0.079 0.921 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.788 3.212 16 H -0.197 1.197 17 H -0.187 1.187 18 H -0.210 1.210 19 C -0.115 4.115 20 H 0.049 0.951 21 H 0.091 0.909 22 H 0.104 0.896 23 H 0.124 0.876 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.006 0.994 31 H 0.004 0.996 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.222 4.202 13.118 13.829 hybrid contribution 0.655 -0.445 -1.274 1.500 sum -0.568 3.757 11.844 12.439 Atomic orbital electron populations 1.22879 0.88463 1.02846 1.01601 1.68416 1.10453 1.19122 1.23525 1.23925 0.96150 0.91163 0.98959 1.24093 0.97907 0.94320 0.93080 1.69157 1.32558 1.08117 1.10713 1.23684 0.94186 0.97229 0.96524 1.23118 1.00657 0.95769 0.97545 1.23339 0.92089 0.96686 0.94677 0.91901 1.18717 0.94759 0.93917 0.90939 1.21592 0.94590 1.36263 1.04868 0.92108 1.25955 0.98059 0.96718 0.99034 1.70123 1.20811 1.45322 1.21131 0.85470 0.79128 0.77979 0.78602 1.19718 1.18675 1.21001 1.23848 0.97274 0.99261 0.91067 0.95132 0.90857 0.89557 0.87605 0.90571 0.90461 0.88627 0.89999 0.89996 0.90615 0.99387 0.99590 0.92927 0.92176 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.21 9.64 127.69 1.23 1.02 16 2 N -0.49 -13.95 6.56 -934.55 -6.13 -20.08 16 3 C 0.03 0.69 7.70 86.41 0.67 1.35 16 4 C 0.02 0.50 2.89 46.48 0.13 0.63 16 5 N -0.48 -17.15 6.13 -880.74 -5.40 -22.55 16 6 C 0.01 0.34 7.64 83.61 0.64 0.98 16 7 C -0.13 -4.59 8.01 30.98 0.25 -4.34 16 8 C 0.04 1.69 2.95 42.18 0.12 1.82 16 9 H 0.06 2.62 7.75 -2.39 -0.02 2.60 16 10 C 0.05 2.92 5.08 29.85 0.15 3.07 16 11 C -0.53 -30.46 9.10 25.60 0.23 -30.23 16 12 H 0.06 3.30 7.74 -2.92 -0.02 3.27 16 13 C 0.00 0.00 5.46 84.66 0.46 0.46 16 14 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 15 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 19 C 0.01 0.50 7.77 86.40 0.67 1.17 16 20 H 0.03 0.77 7.62 -2.39 -0.02 0.75 16 21 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 23 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.08 1.97 7.92 -2.38 -0.02 1.95 16 25 H 0.08 2.39 7.85 -2.39 -0.02 2.37 16 26 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.08 1.97 7.86 -2.39 -0.02 1.95 16 28 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 29 H 0.08 2.81 7.94 -2.39 -0.02 2.79 16 30 H -0.01 -0.72 7.88 -2.39 -0.02 -0.74 16 31 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 32 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 33 H 0.06 2.30 7.62 -2.38 -0.02 2.28 16 34 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -64.58 278.56 -3.61 -68.19 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.04 Total: 9.36 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 4.56 Total: -24.05 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -11.24 Total: -100.01 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -64.58 -3.61 -68.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.623 kcal (2) G-P(sol) polarization free energy of solvation -64.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds