Wall clock time and date at job start Mon Mar 30 2020 02:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47080 * 2 1 4 4 C 1.52995 * 109.47246 * 119.99621 * 2 1 3 5 5 C 1.53005 * 109.47081 * 174.16250 * 4 2 1 6 6 H 1.09001 * 109.46725 * 54.20342 * 5 4 2 7 7 C 1.52997 * 109.47243 * 294.20226 * 5 4 2 8 8 C 1.52996 * 109.47403 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46989 * 59.99705 * 8 7 5 10 10 C 1.52997 * 109.47289 * 300.00364 * 9 8 7 11 11 C 1.52996 * 109.47403 * 59.99889 * 10 9 8 12 12 H 1.09000 * 109.47767 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46967 * 59.99848 * 11 10 9 14 14 H 1.08004 * 120.00314 * 239.99759 * 13 11 10 15 15 C 1.37876 * 119.99784 * 60.00563 * 13 11 10 16 16 N 1.31511 * 120.00430 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 120.00048 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47459 * 89.99512 * 17 15 13 19 19 H 1.48499 * 109.47170 * 209.99865 * 17 15 13 20 20 H 1.48502 * 109.46947 * 329.99732 * 17 15 13 21 21 H 1.08995 * 109.46928 * 58.51135 * 1 2 3 22 22 H 1.09000 * 109.46418 * 178.51234 * 1 2 3 23 23 H 1.08997 * 109.47011 * 298.51206 * 1 2 3 24 24 H 1.08996 * 109.47222 * 239.99978 * 2 1 3 25 25 H 1.09001 * 109.47351 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.47064 * 299.99651 * 3 2 1 27 27 H 1.08996 * 109.47557 * 59.99617 * 3 2 1 28 28 H 1.08997 * 109.47362 * 54.16466 * 4 2 1 29 29 H 1.09000 * 109.47344 * 294.16269 * 4 2 1 30 30 H 1.09004 * 109.46804 * 300.00232 * 7 5 4 31 31 H 1.08996 * 109.47174 * 59.99578 * 7 5 4 32 32 H 1.09001 * 109.47781 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47228 * 300.00610 * 8 7 5 34 34 H 1.08998 * 109.47431 * 180.02562 * 9 8 7 35 35 H 1.08999 * 109.47292 * 60.00229 * 9 8 7 36 36 H 1.09004 * 109.46804 * 299.99664 * 10 9 8 37 37 H 1.09004 * 109.46982 * 180.02562 * 10 9 8 38 38 H 0.97003 * 120.00503 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5630 -0.8494 1.1780 6 1 4.0036 0.1351 1.0207 7 6 3.9436 -1.7699 0.0167 8 6 5.4665 -1.8987 -0.0542 9 6 5.9899 -2.4887 1.2569 10 6 5.6094 -1.5682 2.4182 11 6 4.0865 -1.4394 2.4891 12 1 3.8153 -0.7840 3.3167 13 6 3.4768 -2.8004 2.7063 14 1 2.7851 -3.2041 1.9817 15 6 3.8020 -3.5300 3.8300 16 7 4.6445 -3.0386 4.7122 17 14 3.0458 -5.2167 4.0997 18 1 3.9116 -6.2522 3.4804 19 1 2.9258 -5.4783 5.5565 20 1 1.6986 -5.2606 3.4763 21 1 -0.3633 0.5368 -0.8763 22 1 -0.3632 -1.0274 -0.0267 23 1 -0.3633 0.4905 0.9030 24 1 1.8934 -0.5138 -0.8899 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9564 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 1.5940 -1.7142 1.3031 29 1 1.7646 -0.1505 2.1361 30 1 3.5029 -2.7544 0.1740 31 1 3.5702 -1.3499 -0.9172 32 1 5.7376 -2.5549 -0.8813 33 1 5.9074 -0.9144 -0.2112 34 1 7.0749 -2.5801 1.2067 35 1 5.5490 -3.4731 1.4141 36 1 6.0504 -0.5838 2.2611 37 1 5.9827 -1.9883 3.3522 38 1 4.8730 -3.5518 5.5030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:27 Heat of formation + Delta-G solvation = -61.642504 kcal Electronic energy + Delta-G solvation = -15032.736886 eV Core-core repulsion = 12872.602762 eV Total energy + Delta-G solvation = -2160.134123 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99435 -36.73884 -34.43851 -32.02457 -30.95615 -27.95473 -27.29177 -26.11232 -23.13576 -22.11815 -20.50777 -20.20075 -17.58900 -16.69054 -16.11957 -15.76406 -15.10948 -14.80647 -14.66389 -14.15514 -13.92094 -13.48403 -13.29901 -12.99688 -12.85205 -12.57062 -12.50531 -12.40585 -12.23808 -11.90820 -11.75472 -11.55811 -11.44186 -11.33669 -11.19601 -10.71393 -10.41818 -10.25417 -10.09576 -7.97913 -6.06004 1.40068 1.42249 1.50186 2.47945 3.29981 4.01658 4.08848 4.22176 4.28820 4.38242 4.43119 4.68400 4.84419 4.86018 4.90786 4.95531 5.00417 5.01531 5.08428 5.11658 5.14345 5.21057 5.28307 5.31639 5.40650 5.48508 5.51340 5.62552 5.71547 5.72679 5.77037 5.83827 5.87642 6.08760 6.29705 6.54702 7.04063 7.58637 9.06984 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.011426 C = 0.009412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.282010 B = 2450.048988 C = 2974.090904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C -0.143 4.143 4 C -0.092 4.092 5 C -0.070 4.070 6 H 0.051 0.949 7 C -0.098 4.098 8 C -0.107 4.107 9 C -0.098 4.098 10 C -0.108 4.108 11 C 0.047 3.953 12 H -0.019 1.019 13 C -0.489 4.489 14 H 0.055 0.945 15 C 0.008 3.992 16 N -0.923 5.923 17 Si 0.937 3.063 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.269 1.269 21 H 0.067 0.933 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.021 0.979 37 H 0.052 0.948 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.434 4.819 -10.389 11.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.200 4.200 4 C -0.130 4.130 5 C -0.088 4.088 6 H 0.070 0.930 7 C -0.135 4.135 8 C -0.144 4.144 9 C -0.136 4.136 10 C -0.146 4.146 11 C 0.028 3.972 12 H -0.001 1.001 13 C -0.527 4.527 14 H 0.073 0.927 15 C -0.189 4.189 16 N -0.564 5.564 17 Si 0.764 3.236 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.193 1.193 21 H 0.086 0.914 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.369 4.771 -10.223 11.774 hybrid contribution -0.157 -1.063 1.013 1.477 sum -3.526 3.707 -9.210 10.536 Atomic orbital electron populations 1.21810 0.94972 1.01446 1.01774 1.21190 0.95860 0.96512 0.97989 1.21839 1.00964 0.95601 1.01579 1.21481 0.95567 0.99228 0.96677 1.21073 0.94935 0.97155 0.95670 0.93022 1.21454 0.95523 0.99363 0.97172 1.21447 0.96152 1.00302 0.96496 1.21284 0.97828 0.99204 0.95291 1.21416 0.98559 0.96046 0.98542 1.18687 0.92280 0.94346 0.91845 1.00130 1.21393 1.24322 1.02114 1.04880 0.92662 1.25629 0.96038 1.00753 0.96440 1.70028 1.35938 1.38753 1.11685 0.85877 0.79203 0.81749 0.76781 1.20554 1.21701 1.19349 0.91377 0.93302 0.93328 0.90844 0.93012 0.91507 0.93483 0.93556 0.94665 0.93479 0.91470 0.91692 0.92253 0.93897 0.93981 0.95996 0.92917 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.19 71.98 0.66 -2.86 16 2 C -0.10 -2.73 2.80 -10.79 -0.03 -2.76 16 3 C -0.14 -3.60 8.97 71.98 0.65 -2.96 16 4 C -0.09 -3.39 3.76 30.59 0.12 -3.27 16 5 C -0.07 -2.77 1.83 -10.79 -0.02 -2.79 16 6 H 0.05 1.95 6.35 -2.39 -0.02 1.94 16 7 C -0.10 -3.50 4.75 30.59 0.15 -3.36 16 8 C -0.11 -3.69 5.92 30.59 0.18 -3.51 16 9 C -0.10 -4.15 5.70 30.59 0.17 -3.98 16 10 C -0.11 -5.19 5.23 30.59 0.16 -5.03 16 11 C 0.05 2.33 2.12 -11.54 -0.02 2.30 16 12 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 13 C -0.49 -26.09 5.94 25.60 0.15 -25.94 16 14 H 0.06 2.91 5.69 -2.91 -0.02 2.90 16 15 C 0.01 0.46 5.30 84.65 0.45 0.91 16 16 N -0.92 -54.26 11.32 21.45 0.24 -54.02 16 17 Si 0.94 44.25 29.54 68.60 2.03 46.28 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.07 1.98 6.34 -2.39 -0.02 1.97 16 25 H 0.05 1.36 6.48 -2.39 -0.02 1.35 16 26 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.87 6.82 -2.39 -0.02 1.85 16 29 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.87 6.62 -2.38 -0.02 1.86 16 31 H 0.07 2.02 6.47 -2.39 -0.02 2.00 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.97 7.22 -2.39 -0.02 1.96 16 36 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.05 2.91 6.07 -2.38 -0.01 2.90 16 38 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -58.45 279.64 5.87 -52.58 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.99 Total: 8.40 kcal Atomic # 6 Polarization: -55.84 SS G_CDS: 2.61 Total: -53.23 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.24 Total: -54.02 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -58.45 5.87 -52.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.063 kcal (2) G-P(sol) polarization free energy of solvation -58.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds