Wall clock time and date at job start Mon Mar 30 2020 02:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00470 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 H 1.08990 * 109.47170 * 54.99895 * 5 4 2 7 7 C 1.53005 * 109.46867 * 294.99684 * 5 4 2 8 8 C 1.53008 * 109.46774 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46995 * 60.00238 * 8 7 5 10 10 C 1.53000 * 109.47320 * 299.99845 * 9 8 7 11 11 C 1.53002 * 109.46776 * 174.99999 * 5 4 2 12 12 H 1.09000 * 109.47312 * 60.00037 * 11 5 4 13 13 C 1.50698 * 109.47135 * 299.99627 * 11 5 4 14 14 H 1.07998 * 119.99898 * 0.02562 * 13 11 5 15 15 C 1.37876 * 119.99805 * 179.97438 * 13 11 5 16 16 N 1.31517 * 120.00221 * 180.02562 * 15 13 11 17 17 Si 1.86808 * 120.00278 * 0.02562 * 15 13 11 18 18 H 1.48496 * 109.46963 * 89.99630 * 17 15 13 19 19 H 1.48494 * 109.47133 * 210.00063 * 17 15 13 20 20 H 1.48500 * 109.46821 * 329.99933 * 17 15 13 21 21 H 1.09008 * 109.46970 * 299.99579 * 1 2 3 22 22 H 1.08996 * 109.47654 * 59.99341 * 1 2 3 23 23 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46970 * 240.00421 * 2 1 3 25 25 H 1.09008 * 109.46731 * 60.00275 * 3 2 1 26 26 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47271 * 300.00893 * 3 2 1 28 28 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 29 29 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 30 30 H 1.09000 * 109.47443 * 300.00098 * 7 5 4 31 31 H 1.09001 * 109.47099 * 60.00379 * 7 5 4 32 32 H 1.08998 * 109.46504 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47044 * 300.00132 * 8 7 5 34 34 H 1.09000 * 109.46863 * 59.99768 * 9 8 7 35 35 H 1.08996 * 109.46657 * 179.97438 * 9 8 7 36 36 H 1.08993 * 109.47427 * 179.97438 * 10 9 8 37 37 H 1.09001 * 109.46578 * 300.00351 * 10 9 8 38 38 H 0.96992 * 120.00673 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1878 6 1 3.9953 0.1610 1.0526 7 6 3.9649 -1.7252 0.0124 8 6 5.4897 -1.8354 -0.0486 9 6 6.0096 -2.4442 1.2553 10 6 5.6095 -1.5502 2.4307 11 6 4.0852 -1.4395 2.4916 12 1 3.6546 -2.4317 2.6268 13 6 3.6911 -0.5589 3.6493 14 1 3.1258 0.3442 3.4728 15 6 4.0515 -0.9067 4.9339 16 7 3.7073 -0.1385 5.9443 17 14 5.0289 -2.4692 5.2392 18 1 6.4810 -2.1642 5.1799 19 1 4.6909 -3.0103 6.5801 20 1 4.6915 -3.4750 4.2001 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.6767 1.9563 0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6054 -1.7199 1.2950 29 1 1.7517 -0.1584 2.1369 30 1 3.5343 -2.7174 0.1476 31 1 3.5941 -1.2917 -0.9165 32 1 5.7747 -2.4728 -0.8857 33 1 5.9206 -0.8434 -0.1836 34 1 5.5786 -3.4362 1.3902 35 1 7.0958 -2.5231 1.2116 36 1 5.9794 -1.9841 3.3596 37 1 6.0404 -0.5581 2.2956 38 1 3.9611 -0.3829 6.8480 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260990942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:32 Heat of formation + Delta-G solvation = -44.758965 kcal Electronic energy + Delta-G solvation = -14965.595547 eV Core-core repulsion = 12806.193549 eV Total energy + Delta-G solvation = -2159.401998 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.54030 -35.42649 -32.74884 -30.67493 -30.09616 -26.79231 -25.74116 -24.14345 -21.84964 -20.40062 -19.17213 -18.64299 -16.61700 -15.20862 -14.70761 -13.89561 -13.69966 -13.48891 -13.14104 -12.83080 -12.79203 -12.54506 -11.88762 -11.69024 -11.42657 -11.12105 -11.02835 -10.71726 -10.68156 -10.36376 -10.31251 -10.13547 -9.94297 -9.81759 -9.56282 -9.34029 -8.76780 -8.61870 -8.41409 -5.99471 -3.96515 3.32105 3.42896 3.45560 4.48207 5.21982 5.30632 5.38810 5.40234 5.46092 5.56165 5.58663 5.95257 5.95954 6.07395 6.14141 6.17399 6.21100 6.23572 6.27100 6.33531 6.42360 6.45434 6.51348 6.56277 6.66743 6.68127 6.76628 6.79101 6.94732 7.12192 7.20013 7.23039 7.38691 7.70696 7.88792 8.62622 9.05878 9.64630 11.13777 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.026949 B = 0.012226 C = 0.009302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.761166 B = 2289.724290 C = 3009.349556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.103 4.103 5 C -0.067 4.067 6 H 0.063 0.937 7 C -0.116 4.116 8 C -0.112 4.112 9 C -0.122 4.122 10 C -0.120 4.120 11 C 0.019 3.981 12 H 0.023 0.977 13 C -0.504 4.504 14 H 0.076 0.924 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.885 3.115 18 H -0.281 1.281 19 H -0.301 1.301 20 H -0.266 1.266 21 H 0.054 0.946 22 H 0.044 0.956 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 -2.078 -11.823 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.202 4.202 4 C -0.140 4.140 5 C -0.085 4.085 6 H 0.082 0.918 7 C -0.154 4.154 8 C -0.150 4.150 9 C -0.160 4.160 10 C -0.157 4.157 11 C 0.000 4.000 12 H 0.041 0.959 13 C -0.542 4.542 14 H 0.094 0.906 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.716 3.284 18 H -0.209 1.209 19 H -0.229 1.229 20 H -0.191 1.191 21 H 0.073 0.927 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.678 -2.053 -11.630 11.829 hybrid contribution 0.656 -0.845 0.395 1.140 sum -0.022 -2.898 -11.234 11.602 Atomic orbital electron populations 1.21833 0.96260 1.01109 1.01036 1.21207 0.94762 0.96426 0.99414 1.21853 1.01442 0.96181 1.00757 1.21633 0.95680 0.99643 0.97033 1.21036 0.94720 0.98336 0.94456 0.91828 1.21696 0.95013 1.00039 0.98626 1.21469 0.96547 1.00223 0.96762 1.21613 0.98889 0.99459 0.96029 1.21956 1.00081 0.98441 0.95266 1.19156 0.90573 0.96711 0.93535 0.95885 1.21113 1.34612 1.08992 0.89464 0.90624 1.25023 0.95740 0.96304 0.96303 1.69901 1.47251 1.38067 0.99202 0.86875 0.80191 0.84835 0.76453 1.20865 1.22860 1.19122 0.92736 0.93665 0.93178 0.91924 0.92662 0.92335 0.93999 0.93228 0.90322 0.92869 0.93013 0.93446 0.92489 0.92933 0.93577 0.93903 0.92412 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.19 37.15 0.34 -1.62 16 2 C -0.10 -1.50 2.78 -90.62 -0.25 -1.75 16 3 C -0.15 -2.14 8.95 37.16 0.33 -1.81 16 4 C -0.10 -1.88 3.99 -26.73 -0.11 -1.99 16 5 C -0.07 -1.30 1.54 -90.62 -0.14 -1.44 16 6 H 0.06 1.27 6.34 -51.93 -0.33 0.94 16 7 C -0.12 -1.91 4.97 -26.72 -0.13 -2.05 16 8 C -0.11 -1.78 5.92 -26.73 -0.16 -1.94 16 9 C -0.12 -2.19 5.92 -26.73 -0.16 -2.35 16 10 C -0.12 -2.62 4.68 -26.75 -0.13 -2.74 16 11 C 0.02 0.44 1.23 -91.79 -0.11 0.33 16 12 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 13 C -0.50 -13.87 8.35 -34.44 -0.29 -14.16 16 14 H 0.08 2.24 6.97 -52.49 -0.37 1.87 16 15 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 16 N -0.91 -27.83 13.96 55.43 0.77 -27.06 16 17 Si 0.89 22.40 24.37 -169.99 -4.14 18.26 16 18 H -0.28 -6.99 6.87 56.52 0.39 -6.60 16 19 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 20 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 21 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 22 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.90 6.34 -51.92 -0.33 0.57 16 25 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 26 H 0.06 0.89 6.46 -51.93 -0.34 0.56 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.66 6.47 -51.93 -0.34 1.33 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.76 6.46 -51.93 -0.34 0.42 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.04 1.00 3.27 -51.93 -0.17 0.83 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 277.34 15.07 4.18 4.18 Total: -1.00 -28.87 277.34 -6.92 -35.78 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.83 Total: -1.48 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: -0.90 Total: -29.69 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: 0.77 Total: -27.06 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.14 Total: 18.26 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.87 -6.92 -35.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.978 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds