Wall clock time and date at job start Mon Mar 30 2020 02:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00470 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 H 1.08990 * 109.47170 * 54.99895 * 5 4 2 7 7 C 1.53005 * 109.46867 * 294.99684 * 5 4 2 8 8 C 1.53008 * 109.46774 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46995 * 60.00238 * 8 7 5 10 10 C 1.53000 * 109.47320 * 299.99845 * 9 8 7 11 11 C 1.53002 * 109.46776 * 174.99999 * 5 4 2 12 12 H 1.09000 * 109.47312 * 60.00037 * 11 5 4 13 13 C 1.50698 * 109.47135 * 299.99627 * 11 5 4 14 14 H 1.07998 * 119.99898 * 0.02562 * 13 11 5 15 15 C 1.37876 * 119.99805 * 179.97438 * 13 11 5 16 16 N 1.31517 * 120.00221 * 180.02562 * 15 13 11 17 17 Si 1.86808 * 120.00278 * 0.02562 * 15 13 11 18 18 H 1.48496 * 109.46963 * 89.99630 * 17 15 13 19 19 H 1.48494 * 109.47133 * 210.00063 * 17 15 13 20 20 H 1.48500 * 109.46821 * 329.99933 * 17 15 13 21 21 H 1.09008 * 109.46970 * 299.99579 * 1 2 3 22 22 H 1.08996 * 109.47654 * 59.99341 * 1 2 3 23 23 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46970 * 240.00421 * 2 1 3 25 25 H 1.09008 * 109.46731 * 60.00275 * 3 2 1 26 26 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47271 * 300.00893 * 3 2 1 28 28 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 29 29 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 30 30 H 1.09000 * 109.47443 * 300.00098 * 7 5 4 31 31 H 1.09001 * 109.47099 * 60.00379 * 7 5 4 32 32 H 1.08998 * 109.46504 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47044 * 300.00132 * 8 7 5 34 34 H 1.09000 * 109.46863 * 59.99768 * 9 8 7 35 35 H 1.08996 * 109.46657 * 179.97438 * 9 8 7 36 36 H 1.08993 * 109.47427 * 179.97438 * 10 9 8 37 37 H 1.09001 * 109.46578 * 300.00351 * 10 9 8 38 38 H 0.96992 * 120.00673 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1878 6 1 3.9953 0.1610 1.0526 7 6 3.9649 -1.7252 0.0124 8 6 5.4897 -1.8354 -0.0486 9 6 6.0096 -2.4442 1.2553 10 6 5.6095 -1.5502 2.4307 11 6 4.0852 -1.4395 2.4916 12 1 3.6546 -2.4317 2.6268 13 6 3.6911 -0.5589 3.6493 14 1 3.1258 0.3442 3.4728 15 6 4.0515 -0.9067 4.9339 16 7 3.7073 -0.1385 5.9443 17 14 5.0289 -2.4692 5.2392 18 1 6.4810 -2.1642 5.1799 19 1 4.6909 -3.0103 6.5801 20 1 4.6915 -3.4750 4.2001 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.6767 1.9563 0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6054 -1.7199 1.2950 29 1 1.7517 -0.1584 2.1369 30 1 3.5343 -2.7174 0.1476 31 1 3.5941 -1.2917 -0.9165 32 1 5.7747 -2.4728 -0.8857 33 1 5.9206 -0.8434 -0.1836 34 1 5.5786 -3.4362 1.3902 35 1 7.0958 -2.5231 1.2116 36 1 5.9794 -1.9841 3.3596 37 1 6.0404 -0.5581 2.2956 38 1 3.9611 -0.3829 6.8480 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:31 Heat of formation + Delta-G solvation = -60.651731 kcal Electronic energy + Delta-G solvation = -14966.284709 eV Core-core repulsion = 12806.193549 eV Total energy + Delta-G solvation = -2160.091160 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 210.168 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.07410 -36.76951 -34.79284 -32.23528 -31.76463 -27.95280 -27.37920 -25.90727 -23.40315 -21.92242 -20.63513 -20.13890 -18.74903 -16.97567 -16.09061 -15.40926 -15.29195 -14.93388 -14.80792 -14.55309 -14.21002 -14.04462 -13.29124 -13.11277 -12.96635 -12.78656 -12.44787 -12.30864 -12.03719 -11.99715 -11.80545 -11.67645 -11.56412 -11.33115 -11.25973 -10.94878 -10.75653 -10.37093 -10.28999 -8.25044 -6.25063 1.28510 1.33818 1.44402 2.34369 3.10532 3.89380 4.01873 4.07418 4.19233 4.25999 4.30443 4.51815 4.66099 4.71703 4.81705 4.84563 4.86155 4.91885 4.92490 4.98586 5.03272 5.07297 5.20241 5.23366 5.32133 5.34239 5.36847 5.43752 5.48499 5.55950 5.62206 5.67276 5.75765 5.85956 5.95453 6.42729 6.82537 7.39127 8.91817 Molecular weight = 210.17amu Principal moments of inertia in cm(-1) A = 0.026949 B = 0.012226 C = 0.009302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.761166 B = 2289.724290 C = 3009.349556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.099 4.099 5 C -0.065 4.065 6 H 0.053 0.947 7 C -0.110 4.110 8 C -0.110 4.110 9 C -0.119 4.119 10 C -0.122 4.122 11 C 0.017 3.983 12 H 0.013 0.987 13 C -0.499 4.499 14 H 0.037 0.963 15 C 0.006 3.994 16 N -0.955 5.955 17 Si 0.946 3.054 18 H -0.272 1.272 19 H -0.304 1.304 20 H -0.249 1.249 21 H 0.039 0.961 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.034 0.966 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.026 0.974 37 H 0.049 0.951 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.123 -3.651 -14.790 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.201 4.201 4 C -0.137 4.137 5 C -0.083 4.083 6 H 0.071 0.929 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.157 4.157 10 C -0.160 4.160 11 C -0.002 4.002 12 H 0.031 0.969 13 C -0.537 4.537 14 H 0.055 0.945 15 C -0.189 4.189 16 N -0.597 5.597 17 Si 0.775 3.225 18 H -0.198 1.198 19 H -0.232 1.232 20 H -0.173 1.173 21 H 0.058 0.942 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.124 -3.631 -14.623 15.068 hybrid contribution 0.342 -0.260 1.328 1.395 sum 0.466 -3.890 -13.296 13.861 Atomic orbital electron populations 1.21819 0.95008 1.01735 1.01524 1.21165 0.95837 0.96105 0.98033 1.21843 1.00945 0.96261 1.01088 1.21551 0.95484 0.99350 0.97288 1.20970 0.94961 0.98323 0.94061 0.92901 1.21650 0.95924 0.99366 0.97832 1.21483 0.95619 1.01019 0.96610 1.21594 1.00440 0.98517 0.95110 1.21885 0.98363 0.99075 0.96668 1.19150 0.92090 0.95164 0.93768 0.96857 1.21453 1.32895 1.08112 0.91264 0.94472 1.25849 0.97231 0.99658 0.96186 1.70057 1.49526 1.40396 0.99695 0.85876 0.79072 0.81244 0.76353 1.19836 1.23214 1.17329 0.94187 0.91261 0.92530 0.89777 0.94722 0.93090 0.91255 0.93322 0.94612 0.92570 0.90388 0.90100 0.92190 0.92655 0.91418 0.95572 0.93225 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.19 71.98 0.66 -2.96 16 2 C -0.09 -2.64 2.78 -10.80 -0.03 -2.67 16 3 C -0.14 -4.10 8.95 71.98 0.64 -3.46 16 4 C -0.10 -3.66 3.99 30.59 0.12 -3.54 16 5 C -0.06 -2.45 1.54 -10.79 -0.02 -2.47 16 6 H 0.05 2.11 6.34 -2.39 -0.02 2.09 16 7 C -0.11 -3.24 4.97 30.60 0.15 -3.09 16 8 C -0.11 -3.00 5.92 30.60 0.18 -2.82 16 9 C -0.12 -3.84 5.92 30.60 0.18 -3.66 16 10 C -0.12 -5.17 4.68 30.58 0.14 -5.03 16 11 C 0.02 0.79 1.23 -11.55 -0.01 0.78 16 12 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 13 C -0.50 -28.63 8.35 25.60 0.21 -28.41 16 14 H 0.04 2.36 6.97 -2.91 -0.02 2.33 16 15 C 0.01 0.38 5.45 84.65 0.46 0.84 16 16 N -0.96 -61.30 13.96 21.45 0.30 -61.00 16 17 Si 0.95 46.90 24.37 68.60 1.67 48.57 16 18 H -0.27 -12.95 6.87 99.48 0.68 -12.26 16 19 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 20 H -0.25 -11.53 6.53 99.48 0.65 -10.88 16 21 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 22 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.08 2.07 6.34 -2.38 -0.02 2.06 16 25 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.05 1.51 6.46 -2.39 -0.02 1.49 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.04 1.60 6.47 -2.39 -0.02 1.58 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.92 6.46 -2.39 -0.02 1.90 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.03 1.18 3.27 -2.39 -0.01 1.17 16 37 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -64.81 277.34 5.59 -59.22 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.91 Total: 9.70 kcal Atomic # 6 Polarization: -59.19 SS G_CDS: 2.70 Total: -56.49 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.30 Total: -61.00 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.67 Total: 48.57 kcal Total: -64.81 5.59 -59.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.428 kcal (2) G-P(sol) polarization free energy of solvation -64.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds